View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15309_low_5 (Length: 448)
Name: NF15309_low_5
Description: NF15309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15309_low_5 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 24111718 - 24111298
Alignment:
| Q |
19 |
caatctttgattgggttaaatgtaatacagatggtgctgcgtctggaatgggtggattggctggagctggtggaatatttagagatagctatgcagatca |
118 |
Q |
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| T |
24111718 |
caatctttgattgggttaaatgtaatacagatggtgctgcgtctggaatcagtggattggctggagctggtggaatatttagagatagctatgcagatca |
24111619 |
T |
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| Q |
119 |
tttgggtagttttactttgaaagtagagaatggctgtgcgctcaaagctgagttagtaggagccatgacagcaattgagatagctgctagtaataattgg |
218 |
Q |
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| T |
24111618 |
tttgggtagttttactttgaaagtagagaatggcaatgcgctcaaagctgagttagtaggagccatgacagcaattgagatagctgctagtaataattgg |
24111519 |
T |
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| Q |
219 |
aggaaattatggttggaggtactgactccaaattggtggttttggctttccaatctggttccatagtgccttggcagttaagacagagatggaagtattg |
318 |
Q |
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| T |
24111518 |
aggaaattatggttggag--actgactccaaattggtggtttcggctttccaatctggttccatagtgccttggcagttaagacagagatggaagtattg |
24111421 |
T |
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| Q |
319 |
tttatttaccattcaatctatggatttcgttgtgtcacatatattcagagaaggtaaccattgtgcagacaagcttgctaatttaggtatttcgttgata |
418 |
Q |
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| T |
24111420 |
tttatttaccattcaatctatggatttcgttgtgtcacatatattcagagaaggtaaccattgtgcagacaagcttgctaatttaggtatttcgttgata |
24111321 |
T |
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| Q |
419 |
gatttggtttggcttgatgatgt |
441 |
Q |
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| T |
24111320 |
gatttggtttggcttaatgatgt |
24111298 |
T |
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Target: scaffold0196 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 30798 - 30839
Alignment:
| Q |
365 |
agagaaggtaaccattgtgcagacaagcttgctaatttaggt |
406 |
Q |
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| T |
30798 |
agagaaggtaaccattgtgctgataagcttgcgaatttaggt |
30839 |
T |
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