View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15309_low_7 (Length: 438)
Name: NF15309_low_7
Description: NF15309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15309_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 39285848 - 39286249
Alignment:
| Q |
19 |
gttgattattggttggtgaggaattcatggggtacaaattggggtgaagatggttacttcaagttggaacgtaatgtgaaaaagagcaatacaggaaagt |
118 |
Q |
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| T |
39285848 |
gttgattattggttggttaggaattcatggggtacaaattggggtgaagatggttacttcaagttggaacgtaatgtgaaaaagatcaatacaggaaagt |
39285947 |
T |
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| Q |
119 |
gtggaattgcaatgcaagcctcatacccagtgaagtatggtcaaaattcagcttatgaaaacaatgaagtgcttgttagcagtgcttgaaacaccaccaa |
218 |
Q |
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| T |
39285948 |
gtggaattgcaatgcaagcctcatacccagtgaagtatggtcaaaattcagcttatgaaaacaatgaagagcttgttagcagtgcttgaaacaccaccaa |
39286047 |
T |
|
| Q |
219 |
cagtatctcaagtgttaaatattcctattgaattatatatgcttattggtttaatattgtaaatagagtattactattttctttacgtgaaagctgcacc |
318 |
Q |
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| T |
39286048 |
cagtatctcaagtgttaaatattcctattgaattatatatgcttattggtttaatattgtaaatagagtattactattttctttacgtgaaagctgcacc |
39286147 |
T |
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| Q |
319 |
taccagctttcactactgttatttgatttcaatgtttaatttgaattgatttcaacttgctagttatattgtggatttatatagatttttgccaacaccc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39286148 |
taccagctttcactactgttatttgatttcaatgtttaatttgaattgatttcaacttgctagttatattgtggatttatatagatttttgccaacaccc |
39286247 |
T |
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| Q |
419 |
tg |
420 |
Q |
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| T |
39286248 |
tg |
39286249 |
T |
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