View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1530_high_17 (Length: 244)
Name: NF1530_high_17
Description: NF1530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1530_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 25015081 - 25014901
Alignment:
| Q |
48 |
gatgacagagacacaagaatattttattttcttccaagnnnnnnnctgttgaaagaaaatgagaagattaggaatcaatccttttactattctttcatca |
147 |
Q |
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| T |
25015081 |
gatgatagagacacaagaatattttattttcttccaagaaaataactgttgaaagaaaatgagaagattaggaatcaatccttttactattcttttatca |
25014982 |
T |
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| Q |
148 |
attaaaaagaatactttaatcaaaataaatcctgtagtggacaatcttttttctctcctgggttcccgtctgtttgtcctt |
228 |
Q |
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| T |
25014981 |
attaaaaagaatactttaatcgaaataaatcctgcagtggacaatcttttttctctcctgggttcccgtctgtttgtcctt |
25014901 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 43230560 - 43230708
Alignment:
| Q |
21 |
tattaattacctcttctcttgaaaatggatgacagagacacaagaatattttattttcttcc-------aagnnnnnnnctgttgaaagaaaatgagaag |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||| | ||| |||||||||||| || |||||||||||||||||||| |
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| T |
43230560 |
tattaattacctcttctcttgaaaatggatgatggagacgcaatagtatgttattttcttcccaaaagaaataagaattgtgttgaaagaaaatgagaag |
43230659 |
T |
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| Q |
114 |
attaggaatcaatccttttactattctttcatcaattaaaaagaatactt |
163 |
Q |
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| T |
43230660 |
attaggaattaat-catttactattctttcataaatcaaaatgaaaactt |
43230708 |
T |
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