View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1530_high_18 (Length: 242)
Name: NF1530_high_18
Description: NF1530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1530_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3750355 - 3750582
Alignment:
| Q |
1 |
cacaaaaagcatgacaaaagtacataacaacaacaatcagagacaatagaattcaaaaccacaaccagaaatttttaagaattgtaaaccttgaatataa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3750355 |
cacaaaaagcatgacaaaagtacaaaacaacaacaatcagagacaatagaattcaaaaccacaaccagaaatttttaagaattgtaaaccttgaatataa |
3750454 |
T |
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| Q |
101 |
agaagtaaatccaaataactgtttttatgtatattctcaagtataaccaactaaa-tttgtatgaaacatggttccttacaactttattaccaaaaggct |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3750455 |
agaagtaaatccaaataactgtttttatgtatattctcaagtataaccaactaaattttgtatgaaacatggttccttacaactttattaccaaaaggct |
3750554 |
T |
|
| Q |
200 |
tatttaaaaacatcctatagttcctcat |
227 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
3750555 |
tatttaaaaacatcctatagttcctcat |
3750582 |
T |
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