View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1530_high_19 (Length: 240)
Name: NF1530_high_19
Description: NF1530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1530_high_19 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 53561789 - 53562009
Alignment:
| Q |
21 |
ttcggatgttgaagacgattggcgttggagtttggaagaggacggtactttttcggttaaatctatgtattccaaattggaaacattgatggtgagggaa |
120 |
Q |
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| T |
53561789 |
ttcggatgttgaagacgattggcgttggagtttggaagaggacggtactttttcggttaaatctatgtattccaaattggaaacattgatggtgagggaa |
53561888 |
T |
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| Q |
121 |
gagagccttcatgaactagagaggagggtgtttaagcatatttggaagagtccggcg-cgaccaaggtcgttgtcttctcgtggaaactcctctatgata |
219 |
Q |
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| T |
53561889 |
gagagccttgatgaactagagaggagggtgtttaagcatatttggaagagtccggcgccgtccaaggtcgttgtcttctcgtggaaactcctccatgata |
53561988 |
T |
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| Q |
220 |
gaattcctacaaagattaatc |
240 |
Q |
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| T |
53561989 |
gaattcctacgaagattaatc |
53562009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 34821823 - 34821779
Alignment:
| Q |
70 |
ttttcggttaaatctatgtattccaaattggaaacattgatggtg |
114 |
Q |
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| T |
34821823 |
ttttcggtaaaatcaatgtattctagattggaaacattgatggtg |
34821779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 4903369 - 4903435
Alignment:
| Q |
45 |
ttggagtttggaagaggacggtactttttcggttaaatctatgtattccaaattggaaacattgatg |
111 |
Q |
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| T |
4903369 |
ttggaggttggatgaggaaggtgctttttcggtaaaatcaatgtattctaaattggaaacattgatg |
4903435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 1556846 - 1556915
Alignment:
| Q |
46 |
tggagtttggaagaggacggtactttttcggttaaatctatgtattccaaattggaaacattgatggtga |
115 |
Q |
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| T |
1556846 |
tggaggttggaggaggacggagctttctcggtcaaatcaatgtattcaaaattggaaacaaggatggtga |
1556915 |
T |
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