View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1530_high_9 (Length: 301)
Name: NF1530_high_9
Description: NF1530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1530_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 13121357 - 13121653
Alignment:
| Q |
1 |
tagccaactaccagtcaatgcaattgcaatgccaagcatttagtctaacaaccttaacatttcctctcgtgcagtccacaaaataatatttaaatacaac |
100 |
Q |
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| T |
13121357 |
tagccaactaccagtcaatgcaattgcaatgccaagcatttagtctaacaaccttaacatttcctctcatgcagtccacaaaataatatttaaatacaac |
13121456 |
T |
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| Q |
101 |
ttgtatattataaaccctaatcttgtacagataatagaaagggactgcacatactctacagtcgaatacctaagtgca----gccgaacttcattatcaa |
196 |
Q |
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| T |
13121457 |
ttgtatgttataaaccctaatcttgtacagataatagaaagggactgcacatactctacagtcgaatacctaagtgcagttggccgaacttcattatcaa |
13121556 |
T |
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| Q |
197 |
acattgtgtgtttctgtgattgcattttcgtttctttattcttttgaaccaatatattgctgaaaaatgtggttgaaattgccgttgtgatgatgtc |
293 |
Q |
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| T |
13121557 |
acattgtgtgtttctgtgattgcattttcgtttctttattcttttgaaccaatatattgctgaaaaatgcggttgaaattgccattgtgatgatgtc |
13121653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 13006041 - 13005985
Alignment:
| Q |
1 |
tagccaactaccagtcaatgcaattgcaatgccaagcatttagtctaacaaccttaa |
57 |
Q |
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| T |
13006041 |
tagccaactaccagtcaatgcaaatgcattgcaaagaacttagtctaacaaccttaa |
13005985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 13005271 - 13005213
Alignment:
| Q |
4 |
ccaactaccagtcaatgcaattgcaatgccaagcatttagtctaacaaccttaacattt |
62 |
Q |
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| T |
13005271 |
ccaactaccagtcaatgcaactgcagtgcaaagtacttagtctaactaccttaacattt |
13005213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 34564881 - 34564949
Alignment:
| Q |
179 |
gccgaacttcattatcaaacattgtgtgtttctgtgattgcattttcgtttctttattcttttgaacca |
247 |
Q |
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| T |
34564881 |
gccgaacttcgttaccaaacatcgtgtgtttttttgtttgcattttcgtttctttattcttttggacca |
34564949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 41810618 - 41810568
Alignment:
| Q |
194 |
caaacattgtgtgtttctgtgattgcattttcgtttctttattcttttgaa |
244 |
Q |
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| T |
41810618 |
caaacattgtgtgtttctctgtttgcattttcatatctttattcttttgaa |
41810568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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