View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1530_low_1 (Length: 527)

Name: NF1530_low_1
Description: NF1530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1530_low_1
NF1530_low_1
[»] chr5 (21 HSPs)
chr5 (266-519)||(13482913-13483162)
chr5 (122-239)||(13482767-13482884)
chr5 (18-73)||(13482661-13482716)
chr5 (395-479)||(28591131-28591215)
chr5 (403-486)||(16611758-16611841)
chr5 (381-479)||(546053-546151)
chr5 (405-479)||(8074483-8074557)
chr5 (378-466)||(18400194-18400283)
chr5 (395-479)||(8075850-8075934)
chr5 (423-491)||(9538054-9538122)
chr5 (395-479)||(25590453-25590536)
chr5 (400-479)||(4592888-4592967)
chr5 (425-486)||(2464721-2464782)
chr5 (434-491)||(18004699-18004756)
chr5 (395-479)||(2466791-2466875)
chr5 (403-479)||(19182980-19183056)
chr5 (396-451)||(9537046-9537101)
chr5 (412-479)||(19186237-19186304)
chr5 (424-473)||(544699-544748)
chr5 (433-478)||(13483174-13483219)
chr5 (425-486)||(16979044-16979105)
[»] chr4 (15 HSPs)
chr4 (378-486)||(53770337-53770446)
chr4 (378-479)||(53771066-53771168)
chr4 (405-486)||(4703227-4703308)
chr4 (381-479)||(31844729-31844828)
chr4 (395-479)||(47878501-47878585)
chr4 (434-485)||(19050299-19050350)
chr4 (392-479)||(44158523-44158610)
chr4 (412-479)||(48740037-48740104)
chr4 (425-479)||(26172959-26173013)
chr4 (405-479)||(47874596-47874670)
chr4 (434-474)||(19051253-19051293)
chr4 (396-479)||(54574448-54574531)
chr4 (395-486)||(39868944-39869033)
chr4 (412-479)||(42278088-42278155)
chr4 (425-479)||(54574822-54574876)
[»] chr1 (19 HSPs)
chr1 (382-479)||(7945571-7945669)
chr1 (378-485)||(22856684-22856792)
chr1 (381-486)||(5782421-5782527)
chr1 (403-479)||(5783126-5783202)
chr1 (405-475)||(7944187-7944257)
chr1 (412-486)||(9341035-9341109)
chr1 (424-486)||(10333196-10333258)
chr1 (381-479)||(32665787-32665886)
chr1 (395-470)||(51450023-51450098)
chr1 (406-484)||(52440571-52440649)
chr1 (423-479)||(25037928-25037984)
chr1 (423-479)||(25043140-25043196)
chr1 (424-479)||(3117700-3117755)
chr1 (424-479)||(6612470-6612525)
chr1 (424-475)||(6614000-6614051)
chr1 (381-475)||(10332993-10333088)
chr1 (424-475)||(44020037-44020088)
chr1 (414-479)||(9339687-9339752)
chr1 (434-479)||(34088486-34088531)
[»] chr7 (22 HSPs)
chr7 (395-479)||(10899090-10899174)
chr7 (378-484)||(8374918-8375025)
chr7 (403-486)||(48788682-48788765)
chr7 (395-477)||(44333161-44333243)
chr7 (405-479)||(48647460-48647534)
chr7 (395-479)||(35727721-35727805)
chr7 (403-486)||(48646079-48646162)
chr7 (403-479)||(13578337-13578413)
chr7 (403-484)||(12220053-12220134)
chr7 (403-479)||(7258305-7258381)
chr7 (395-479)||(8048801-8048885)
chr7 (423-479)||(46286553-46286609)
chr7 (412-475)||(8375604-8375667)
chr7 (381-479)||(43457464-43457563)
chr7 (412-486)||(30925018-30925092)
chr7 (424-473)||(34704960-34705009)
chr7 (426-479)||(44530628-44530681)
chr7 (406-479)||(45583717-45583790)
chr7 (424-475)||(33607644-33607695)
chr7 (405-479)||(48777288-48777362)
chr7 (395-479)||(39708125-39708209)
chr7 (395-475)||(42477403-42477482)
[»] chr3 (20 HSPs)
chr3 (395-479)||(17700540-17700624)
chr3 (381-479)||(45600956-45601054)
chr3 (378-479)||(47118068-47118170)
chr3 (395-479)||(48573007-48573091)
chr3 (405-479)||(11773068-11773142)
chr3 (378-479)||(33428452-33428554)
chr3 (423-479)||(48574476-48574532)
chr3 (386-488)||(19114545-19114648)
chr3 (395-466)||(52318347-52318418)
chr3 (411-479)||(36280334-36280402)
chr3 (412-479)||(2591666-2591733)
chr3 (424-479)||(3671089-3671144)
chr3 (392-479)||(20464088-20464175)
chr3 (412-475)||(36278991-36279054)
chr3 (405-479)||(17701936-17702010)
chr3 (403-472)||(47427890-47427959)
chr3 (395-479)||(34263827-34263911)
chr3 (412-486)||(49261547-49261618)
chr3 (396-479)||(55389486-55389569)
chr3 (405-479)||(2592024-2592098)
[»] chr6 (3 HSPs)
chr6 (381-479)||(30748006-30748105)
chr6 (395-479)||(31218977-31219061)
chr6 (378-486)||(31219170-31219279)
[»] chr2 (22 HSPs)
chr2 (395-486)||(31091537-31091628)
chr2 (395-476)||(5915012-5915093)
chr2 (395-484)||(17466840-17466929)
chr2 (405-486)||(24458092-24458173)
chr2 (395-479)||(32766256-32766340)
chr2 (395-479)||(40000351-40000435)
chr2 (395-486)||(15441981-15442072)
chr2 (412-479)||(17330247-17330314)
chr2 (405-479)||(2910132-2910206)
chr2 (423-479)||(14704056-14704112)
chr2 (403-479)||(38985006-38985082)
chr2 (395-475)||(39015027-39015107)
chr2 (424-479)||(31814361-31814416)
chr2 (424-479)||(32764989-32765044)
chr2 (381-473)||(31090171-31090264)
chr2 (395-479)||(24459463-24459547)
chr2 (416-479)||(17466084-17466147)
chr2 (378-479)||(5914309-5914410)
chr2 (434-479)||(7073700-7073745)
chr2 (434-479)||(21733788-21733833)
chr2 (424-486)||(39016393-39016451)
chr2 (427-479)||(34037690-34037742)
[»] chr8 (10 HSPs)
chr8 (423-486)||(5965452-5965515)
chr8 (424-479)||(5736893-5736948)
chr8 (381-479)||(32898462-32898561)
chr8 (405-479)||(35177427-35177501)
chr8 (429-486)||(45476218-45476275)
chr8 (381-479)||(41754812-41754910)
chr8 (423-479)||(35178821-35178877)
chr8 (434-485)||(28619050-28619101)
chr8 (422-476)||(1951991-1952045)
chr8 (398-472)||(41754023-41754097)
[»] scaffold0767 (1 HSPs)
scaffold0767 (424-486)||(5650-5712)
[»] scaffold0034 (1 HSPs)
scaffold0034 (405-479)||(116087-116161)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 266 - 519
Target Start/End: Original strand, 13482913 - 13483162
Alignment:
Q  266 tattgtattgttgcagtgtagtgtgatttggtgctgtctgaaaaagtgctggtgtaaagtgaattcaatgaatgaaacactgtcaccatttcaataaaca 365  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13482913 tattgtattgttgcagggtagtgtgatttggtgctgtctgaaaaagtgctggtgtaaagtgaattcaatgaatgaaacactgtcaccatttcaataaaca 13483012  T
Q  366 taaattcaggacatggtcattttagtcccgactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcact 465  Q
    ||||||||||| ||| ||| |||||||||||||||||| ||||| |||| |||| |||||||||||  |||||||| |||||||||||||||||||||||    
T  13483013 taaattcaggaaatgatcactttagtcccgactctgtatctcgcattcagataggttcctgactcatgattaaatataaagaagtctcttactctgcact 13483112  T
Q  466 ttcgttatcactttcgtctcttatgtgcgtgccacaatcacttaatagaattat 519  Q
    |||||||||||||| |||||||||    ||||||||||||||||| ||||||||    
T  13483113 ttcgttatcacttttgtctcttat----gtgccacaatcacttaacagaattat 13483162  T

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Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 13482767 - 13482884
Alignment:
Q  122 agaaaactgaggaaatgcaatactagaagaacacaaaacacgcagtgggtggccgtagctttcgctgcttgccctcttattagccctgcactatatcaag 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13482767 agaaaactgaggaaatgcaatactagaagaacacaaaacacgcagtgggtggccgtagctttcgctgcttgccctcttattagccctgcactatatcaag 13482866  T
Q  222 ccttagccctgctaactg 239  Q
    | ||||||||||||||||    
T  13482867 ctttagccctgctaactg 13482884  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 13482661 - 13482716
Alignment:
Q  18 gaatgtaatatcttagatttgttttatgctgagttgattgataaatatacaaagct 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13482661 gaatgtaatatcttagatttgttttatgctgagttgattgataaatatacaaagct 13482716  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 28591215 - 28591131
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| |||||||| |||||||| | |||||||||| |||||||||||| || || || ||||||||||| | ||||||||||    
T  28591215 gactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataaatccctgactctgcacttcctttatcacttt 28591131  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 486
Target Start/End: Original strand, 16611758 - 16611841
Alignment:
Q  403 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    |||||||| |||||||| |  ||||||||| |||||||||||||||| |||| | | ||||||| |||||||||||| ||||||    
T  16611758 acctcgctgtcacataggtctctgactcaggattaaatacaaagaagcctctgattatgcacttccgttatcactttagtctct 16611841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 479
Target Start/End: Complemental strand, 546151 - 546053
Alignment:
Q  381 gtcattttagtcccgactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||| ||||||||||| | || | |||||| |||||||| | |||||||||| |||||||||| | |||||  | ||||||||||| ||||||||||||    
T  546151 gtcactttagtcccgattttgcagctcgctgtcacataggtccctgactcaggattaaatacagataagtccttgactctgcacttccgttatcacttt 546053  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 405 - 479
Target Start/End: Original strand, 8074483 - 8074557
Alignment:
Q  405 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||| |||||||  | |||||||||| |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  8074483 ctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcacttt 8074557  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 18400194 - 18400283
Alignment:
Q  378 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactt 466  Q
    ||||||| ||||||||| ||||||| ||||| || |||||||| | | |||||||| |||||||| ||||||||| || |||||||||||    
T  18400194 atggtcactttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaataaaaagaagtcactgactctgcactt 18400283  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 8075934 - 8075850
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| |||||||| | | |||||| ||||| |||  |||||||||||| |||| ||| | ||||||||||||||||||||||    
T  8075934 gactctgcacctcgctgttagatagatccctgattcaagattaaatacaaaaaagtatctgattctgcactttcgttatcacttt 8075850  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 491
Target Start/End: Complemental strand, 9538122 - 9538054
Alignment:
Q  423 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctcttatgt 491  Q
    |||||||||| ||||||||||||||||||||| | | ||||||| |||||||| ||| |||||| ||||    
T  9538122 cctgactcaggattaaatacaaagaagtctctgattgtgcacttccgttatcattttagtctctgatgt 9538054  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 25590453 - 25590536
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| |||||||| |||||||| | |||||||| || ||||||||||| |||||||| | |||||||||  |||||||||||    
T  25590453 gactctgcacctcgctgtcacataggtccctgactcgga-ttaaatacaaataagtctctgattctgcacttctgttatcacttt 25590536  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 479
Target Start/End: Original strand, 4592888 - 4592967
Alignment:
Q  400 tgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||| |||||| |||||||  | |||||||||  |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  4592888 tgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatcacttt 4592967  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 486
Target Start/End: Original strand, 2464721 - 2464782
Alignment:
Q  425 tgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    |||||||  |||||||||||| ||||| || ||||||||||| |||||||||||| ||||||    
T  2464721 tgactcatgattaaatacaaataagtccctaactctgcacttacgttatcactttagtctct 2464782  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 434 - 491
Target Start/End: Original strand, 18004699 - 18004756
Alignment:
Q  434 attaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctcttatgt 491  Q
    |||||||||||||| |||| | ||||||||||| |||||||||||| |||||| ||||    
T  18004699 attaaatacaaagaggtctatgactctgcacttccgttatcactttagtctctgatgt 18004756  T

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Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 2466875 - 2466791
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| |||||||| |||||||| |   ||| |||| |||||||| ||| ||||| || ||||||||||| ||||||||||||    
T  2466875 gactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtccctaactctgcacttccgttatcacttt 2466791  T

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Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 479
Target Start/End: Original strand, 19182980 - 19183056
Alignment:
Q  403 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||| |||||||| |  ||||||||| |||||||||||| ||||  || ||||| ||||| ||||||||||||    
T  19182980 acctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatcacttt 19183056  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 451
Target Start/End: Original strand, 9537046 - 9537101
Alignment:
Q  396 actctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtc 451  Q
    |||||| |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  9537046 actctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagtc 9537101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 479
Target Start/End: Complemental strand, 19186304 - 19186237
Alignment:
Q  412 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||| | ||||||| || |||||||||||| |||||||| ||||| || || ||||||||||||    
T  19186304 tcacataggtccctgacttaggattaaatacaaacaagtctctgactctacatttccgttatcacttt 19186237  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 473
Target Start/End: Original strand, 544699 - 544748
Alignment:
Q  424 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttat 473  Q
    ||||||||| |||||||||||| ||||| || ||||||||||| ||||||    
T  544699 ctgactcaggattaaatacaaataagtcactgactctgcacttccgttat 544748  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 478
Target Start/End: Complemental strand, 13483219 - 13483174
Alignment:
Q  433 aattaaatacaaagaagtctcttactctgcactttcgttatcactt 478  Q
    ||||||||||||| |||||||| ||| ||||||| |||||||||||    
T  13483219 aattaaatacaaacaagtctctgactttgcacttccgttatcactt 13483174  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 486
Target Start/End: Original strand, 16979044 - 16979105
Alignment:
Q  425 tgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    |||||||||||||||| |||| ||||| || |||||| |||| |||||||| ||| ||||||    
T  16979044 tgactcagaattaaatgcaaataagtccctaactctgtacttacgttatcattttagtctct 16979105  T

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Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 378 - 486
Target Start/End: Original strand, 53770337 - 53770446
Alignment:
Q  378 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 476  Q
    ||||||| ||||||| | ||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| | |||||||    
T  53770337 atggtcactttagtctctgactctgcacctcgcattcacataggttcctgactcagaattaaatacaaagaagtctatgactctgcacttccattatcac 53770436  T
Q  477 tttcgtctct 486  Q
    | | ||||||    
T  53770437 tctagtctct 53770446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 378 - 479
Target Start/End: Complemental strand, 53771168 - 53771066
Alignment:
Q  378 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 476  Q
    ||||||| ||||||||| ||||||| |||||| | |||||||| | ||||||||||||||||||||||||||| | || ||||||||||| |||||||||    
T  53771168 atggtcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagcccctgactctgcacttccgttatcac 53771069  T
Q  477 ttt 479  Q
    |||    
T  53771068 ttt 53771066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 486
Target Start/End: Complemental strand, 4703308 - 4703227
Alignment:
Q  405 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    |||||| |||||||| | ||| |||||||||||||||||||||||||| | ||| | ||||| |||||||||||| ||||||    
T  4703308 ctcgctgtcacataggtccctaactcagaattaaatacaaagaagtctttgactgtacacttccgttatcactttagtctct 4703227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 479
Target Start/End: Original strand, 31844729 - 31844828
Alignment:
Q  381 gtcattttagtcccga-ctctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||| ||||||||| | ||||| |||||||| |||||||| | |||||||||| |||||||||||| ||||| || ||||| ||||| | ||||||||||    
T  31844729 gtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtccctaactctacacttcccttatcacttt 31844828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 47878585 - 47878501
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| |||||||| | |||||| | |||||||| | |||||||||||| ||||| || ||||| ||||| ||||||||||||    
T  47878585 gactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtccctgactctacacttccgttatcacttt 47878501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 485
Target Start/End: Original strand, 19050299 - 19050350
Alignment:
Q  434 attaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctc 485  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||| |||||    
T  19050299 attaaatacaaagaagtctcggactctgcacttccgttatcactttagtctc 19050350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 479
Target Start/End: Original strand, 44158523 - 44158610
Alignment:
Q  392 cccgactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||||| |||||| | | ||| || |||||||||||| |||||||||||||||||| || |||||  ||||| ||||| |||||    
T  44158523 cccgactctgcacctcgttgttacagaggttcctgactcaggattaaatacaaagaagtccctgactctatacttttgttattacttt 44158610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 479
Target Start/End: Complemental strand, 48740104 - 48740037
Alignment:
Q  412 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||| ||||| ||||||||| ||||||||||||||||||| |  |||||||||||  |||||||||||    
T  48740104 tcacgtagatccctgactcataattaaatacaaagaagtccccaactctgcacttctgttatcacttt 48740037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 479
Target Start/End: Complemental strand, 26173013 - 26172959
Alignment:
Q  425 tgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||  |||||||||||| |||||||| ||||||||||| ||||||||||||    
T  26173013 tgactcaagattaaatacaaataagtctctgactctgcacttccgttatcacttt 26172959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 479
Target Start/End: Original strand, 47874596 - 47874670
Alignment:
Q  405 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||| |||||||| | |||||||||  |||||||||||| ||||| || | ||||||||| ||||||||||||    
T  47874596 ctcgctatcacataggtccctgactcaagattaaatacaaataagtccctgattctgcacttccgttatcacttt 47874670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 474
Target Start/End: Complemental strand, 19051293 - 19051253
Alignment:
Q  434 attaaatacaaagaagtctcttactctgcactttcgttatc 474  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  19051293 attaaatacaaagaagtctctgactctacactttcgttatc 19051253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 479
Target Start/End: Original strand, 54574448 - 54574531
Alignment:
Q  396 actctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctctt-actctgcactttcgttatcacttt 479  Q
    |||||| | |||||| |||||||| |  ||||||||| |||||||||||| |||| |||| ||||||||||| ||||||||||||    
T  54574448 actctgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagt-tcttaactctgcacttccgttatcacttt 54574531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 486
Target Start/End: Original strand, 39868944 - 39869033
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    ||||||| |||||||| | ||| || | ||||||||| ||||||||||||| |||| ||  ||||||||||| |||||||||||| ||||||    
T  39868944 gactctgcacctcgctgttacaaaggtccctgactcataattaaatacaaacaagt-tc-gactctgcacttccgttatcactttagtctct 39869033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 479
Target Start/End: Original strand, 42278088 - 42278155
Alignment:
Q  412 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||| | |||||||| | |||||||||||| ||||  || ||||||||||| ||||||||||||    
T  42278088 tcacataggtccctgactcgggattaaatacaaataagttcctgactctgcacttccgttatcacttt 42278155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 479
Target Start/End: Complemental strand, 54574876 - 54574822
Alignment:
Q  425 tgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||| |||||||||||| || ||||| |||||||||||  |||||||||||    
T  54574876 tgactcaggattaaatacaaataaatctctaactctgcacttctgttatcacttt 54574822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 382 - 479
Target Start/End: Complemental strand, 7945669 - 7945571
Alignment:
Q  382 tcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| ||||| ||||||| |||||||| |||||||| |||||||||||| |||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  7945669 tcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttccgttatcacttt 7945571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 378 - 485
Target Start/End: Original strand, 22856684 - 22856792
Alignment:
Q  378 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 476  Q
    ||||||| ||||||| | ||||||| ||| || | | ||| |||||| |||||||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  22856684 atggtcactttagtcactgactctgcaccacgttgttacaaagattcttgactcaggattaaatacaaagaagtctctaactctgcacttccgttatcac 22856783  T
Q  477 tttcgtctc 485  Q
    ||| |||||    
T  22856784 tttagtctc 22856792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 486
Target Start/End: Original strand, 5782421 - 5782527
Alignment:
Q  381 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||||||||| ||||||| |||||||| |||||||| |  ||||||||  ||||||||||||||||||||| | | ||||||| | ||||||||||    
T  5782421 gtcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctgattatgcacttcccttatcacttt 5782520  T
Q  480 cgtctct 486  Q
     ||||||    
T  5782521 agtctct 5782527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 403 - 479
Target Start/End: Complemental strand, 5783202 - 5783126
Alignment:
Q  403 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||| |||||||||| |  ||||||||||||||||||||||||||  | ||||||||||| ||||||||||||    
T  5783202 acctcgctgtcacatagatcctcgactcagaattaaatacaaagaagtccatgactctgcacttccgttatcacttt 5783126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 405 - 475
Target Start/End: Original strand, 7944187 - 7944257
Alignment:
Q  405 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 475  Q
    |||||| |||||||| | ||||||||| ||||||||||||| |||||  | ||||||||||||||||||||    
T  7944187 ctcgctgtcacataggtccctgactcaaaattaaatacaaataagtccttgactctgcactttcgttatca 7944257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 412 - 486
Target Start/End: Complemental strand, 9341109 - 9341035
Alignment:
Q  412 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    |||||||| | |||||||||| |||||||||||| |||||||| ||| |||||||  ||||||||||| ||||||    
T  9341109 tcacataggtccctgactcaggattaaatacaaataagtctctgactttgcacttctgttatcactttagtctct 9341035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 424 - 486
Target Start/End: Complemental strand, 10333258 - 10333196
Alignment:
Q  424 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    ||||||||  |||||||||||| |||||||| ||||||||||| |||||||||||| ||||||    
T  10333258 ctgactcaagattaaatacaaataagtctctgactctgcacttccgttatcactttagtctct 10333196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 479
Target Start/End: Complemental strand, 32665886 - 32665787
Alignment:
Q  381 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||| ||||||||| || |||| | |||||| |||||||| |  ||||||||  |||||||||||| |||||| | ||||||||||| ||||||||||||    
T  32665886 gtcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtctttgactctgcacttccgttatcacttt 32665787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 470
Target Start/End: Original strand, 51450023 - 51450098
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgt 470  Q
    ||||||| |||||||  ||||| || ||||| ||||| |||||||| ||||||||| ||| |||||||||||||||    
T  51450023 gactctgcacctcgccgtcacaaaggttcctaactcataattaaatgcaaagaagtttctgactctgcactttcgt 51450098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 484
Target Start/End: Complemental strand, 52440649 - 52440571
Alignment:
Q  406 tcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtct 484  Q
    ||||| |||||||| | ||||| |||| |||||||| ||| |||||||| ||||||||||| | |||||||||| ||||    
T  52440649 tcgctgtcacataggtccctgagtcaggattaaatataaataagtctctgactctgcacttccattatcactttagtct 52440571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 479
Target Start/End: Original strand, 25037928 - 25037984
Alignment:
Q  423 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||||  |||||||||||||||||| || |||||| |||| ||||||||||||    
T  25037928 cctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcacttt 25037984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 479
Target Start/End: Original strand, 25043140 - 25043196
Alignment:
Q  423 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||||  |||||||||||||||||| || |||||| |||| ||||||||||||    
T  25043140 cctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcacttt 25043196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 479
Target Start/End: Original strand, 3117700 - 3117755
Alignment:
Q  424 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||||  ||||||||||||||| ||||| ||||| ||||| ||||||||||||    
T  3117700 ctgactcaagattaaatacaaagaaatctctgactctccacttccgttatcacttt 3117755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 479
Target Start/End: Original strand, 6612470 - 6612525
Alignment:
Q  424 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||||  |||||||||||| |||||||| ||||||||||| | ||||||||||    
T  6612470 ctgactcatgattaaatacaaacaagtctctgactctgcacttccattatcacttt 6612525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 475
Target Start/End: Complemental strand, 6614051 - 6614000
Alignment:
Q  424 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 475  Q
    ||||||||| |||||||||||| |||||||| |||||||||||  |||||||    
T  6614051 ctgactcaggattaaatacaaataagtctctgactctgcacttcagttatca 6614000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 475
Target Start/End: Original strand, 10332993 - 10333088
Alignment:
Q  381 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 475  Q
    |||| ||||||||| |||| || |||||| | |||||||| | | ||| |||| |||||||| ||| ||||| |||||||||||||| ||||||||    
T  10332993 gtcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtcccttactctgcacttccgttatca 10333088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 475
Target Start/End: Original strand, 44020037 - 44020088
Alignment:
Q  424 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 475  Q
    ||||||||  |||||||| |||||||||||| ||||||||||| ||||||||    
T  44020037 ctgactcaagattaaatataaagaagtctctgactctgcacttacgttatca 44020088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 479
Target Start/End: Original strand, 9339687 - 9339752
Alignment:
Q  414 acatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||| | |||||||||| |||||||||||| || || |  ||||||||||| ||||||||||||    
T  9339687 acataggtccctgactcaggattaaatacaaataaatccccgactctgcacttccgttatcacttt 9339752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 34088531 - 34088486
Alignment:
Q  434 attaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||||||||||||||||| ||||||||||| |  |||||||||    
T  34088531 attaaatacaaagaagtctctgactctgcacttccactatcacttt 34088486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 10899174 - 10899090
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| |||||||| |||||||||| | |||| ||| |||||||||||| |||||||| ||||||||||| ||||||||||||    
T  10899174 gactctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctgactctgcacttccgttatcacttt 10899090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 484
Target Start/End: Original strand, 8374918 - 8375025
Alignment:
Q  378 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 476  Q
    ||||| ||||||||||| ||||||| |||||||| |||||||| |  |||||||||||||||||||||| |||| ||| | | ||||||| |||||||||    
T  8374918 atggtgattttagtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctgattttgcacttccgttatcac 8375017  T
Q  477 tttcgtct 484  Q
    ||| ||||    
T  8375018 tttagtct 8375025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 403 - 486
Target Start/End: Complemental strand, 48788765 - 48788682
Alignment:
Q  403 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    |||||||| |||||||| | ||||||||| ||||||||| ||| |||||||| ||||||||||| |||||||||||| ||||||    
T  48788765 acctcgctgtcacataggtccctgactcataattaaatataaataagtctctgactctgcacttccgttatcactttagtctct 48788682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 477
Target Start/End: Original strand, 44333161 - 44333243
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcact 477  Q
    ||||||| |||||||| |||||||| | |||||||||  |||||||||||| |||||||| ||||||||||| ||||||||||    
T  44333161 gactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgttatcact 44333243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 479
Target Start/End: Complemental strand, 48647534 - 48647460
Alignment:
Q  405 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||| |||||||| | |||||||||| |||||||||||| |||||||| |||||||||||| |||||||||||    
T  48647534 ctcgctatcacataggtccctgactcaggattaaatacaaataagtctctcactctgcacttttgttatcacttt 48647460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 35727721 - 35727805
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| |||||||| |||||||| | |||||||||| |||||||| ||| |||||||| ||||||||| | ||||||||||||    
T  35727721 gactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacatccgttatcacttt 35727805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 403 - 486
Target Start/End: Original strand, 48646079 - 48646162
Alignment:
Q  403 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    |||||||| |||||||| | |||||||||| |||||||||||| ||||| || ||||| ||||| |||||||||||| ||||||    
T  48646079 acctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgttatcactttagtctct 48646162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 403 - 479
Target Start/End: Complemental strand, 13578413 - 13578337
Alignment:
Q  403 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||| ||| | ||||  |||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||    
T  13578413 acctcgctgtcataaagatcactgactcagaattaaatacaaataagtcactgactctgcacttccgttatcacttt 13578337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 484
Target Start/End: Original strand, 12220053 - 12220134
Alignment:
Q  403 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtct 484  Q
    |||||| | ||||| ||||||||||||||  |||||||| |||||||||||| |||||||||||  | ||||||||| ||||    
T  12220053 acctcgttgtcacaaagattcctgactcaagattaaatagaaagaagtctctgactctgcacttctgatatcactttagtct 12220134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 479
Target Start/End: Original strand, 7258305 - 7258381
Alignment:
Q  403 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||| | |||||||| | ||| |||||| |||||||||||| |||||||| |||||||||||  |||||||||||    
T  7258305 acctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctgttatcacttt 7258381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 8048885 - 8048801
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| ||||||||  |||| || |  ||||||||  ||||||||||||||||||||  ||||||||||| ||||||||||||    
T  8048885 gactctgcacctcgctgacacaaaggtctctgactcaagattaaatacaaagaagtctccgactctgcacttccgttatcacttt 8048801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 479
Target Start/End: Original strand, 46286553 - 46286609
Alignment:
Q  423 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||||| |||||||||||| |||||||| |||||||||||  |||||||||||    
T  46286553 cctgactcaggattaaatacaaataagtctctgactctgcacttctgttatcacttt 46286609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 475
Target Start/End: Complemental strand, 8375667 - 8375604
Alignment:
Q  412 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 475  Q
    |||||||| | |||||||||  ||||||||||||||||| ||| ||||||||||| ||||||||    
T  8375667 tcacataggtccctgactcatgattaaatacaaagaagtttctgactctgcacttccgttatca 8375604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 479
Target Start/End: Original strand, 43457464 - 43457563
Alignment:
Q  381 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||| ||||||||| || |||| | |||||| || ||||| | |||||||||| |||||||||||| ||||| |  ||||||||||| ||||||||||||    
T  43457464 gtcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtccccgactctgcacttccgttatcacttt 43457563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 486
Target Start/End: Complemental strand, 30925092 - 30925018
Alignment:
Q  412 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    |||||||| | | |||||||| |||||||||||| |||||||| ||| ||||||| |||||| ||||| ||||||    
T  30925092 tcacataggtccttgactcaggattaaatacaaataagtctctgactatgcacttccgttattactttagtctct 30925018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 473
Target Start/End: Original strand, 34704960 - 34705009
Alignment:
Q  424 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttat 473  Q
    ||||||||| ||||||||||||||||||||| ||| || |||||||||||    
T  34704960 ctgactcaggattaaatacaaagaagtctctgactgtgtactttcgttat 34705009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 426 - 479
Target Start/End: Complemental strand, 44530681 - 44530628
Alignment:
Q  426 gactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| |||||||| ||| |||||||| ||||||||||| ||||||||||||    
T  44530681 gactcaggattaaatataaataagtctctgactctgcacttccgttatcacttt 44530628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 479
Target Start/End: Original strand, 45583717 - 45583790
Alignment:
Q  406 tcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||| |||||||| | ||||||||||||||||||||| | ||||  || | ||||||||| ||||||||||||    
T  45583717 tcgctatcacataggtccctgactcagaattaaatacagataagttcctgattctgcacttccgttatcacttt 45583790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 475
Target Start/End: Complemental strand, 33607695 - 33607644
Alignment:
Q  424 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 475  Q
    |||| |||| ||||||||||||||||||||| | ||||||||| ||||||||    
T  33607695 ctgattcaggattaaatacaaagaagtctctgattctgcacttccgttatca 33607644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 479
Target Start/End: Original strand, 48777288 - 48777362
Alignment:
Q  405 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||| |||||||  | |||||||||  |||||||||||| || || || ||||||||||| ||||||||||||    
T  48777288 ctcgctgtcacataagtccctgactcatgattaaatacaaataattccctgactctgcacttccgttatcacttt 48777362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 39708125 - 39708209
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||||||||||  ||||| || | | |||||||  ||| |||||||||||||| |  ||| ||||||| ||||||||||||    
T  39708125 gactctgtacctcgccgtcacaaaggtccatgactcaagattgaatacaaagaagtcaccgactttgcacttccgttatcacttt 39708209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 475
Target Start/End: Original strand, 42477403 - 42477482
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 475  Q
    ||||||| |||||| | || ||||| |  ||||||||| |||||||||||| ||||| || ||||||||||| ||||||||    
T  42477403 gactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagtc-ctgactctgcacttccgttatca 42477482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 17700540 - 17700624
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| |||||| | |||||||| |||||||||||| |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  17700540 gactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcacttt 17700624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 381 - 479
Target Start/End: Complemental strand, 45601054 - 45600956
Alignment:
Q  381 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||| ||||||||| |||||||| ||||||| |||||||| | ||||| |||| |||||||||||||||||| || ||||||||||| ||||||||||||    
T  45601054 gtcactttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatacaaagaagtc-ctgactctgcacttccgttatcacttt 45600956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 479
Target Start/End: Complemental strand, 47118170 - 47118068
Alignment:
Q  378 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 476  Q
    ||||||| ||||||||| ||||||| |||||| | ||| |||  | || ||||||| ||||||| ||||||||||||| |||||||||||||||||||||    
T  47118170 atggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctgactctgcactttcgttatcac 47118071  T
Q  477 ttt 479  Q
    |||    
T  47118070 ttt 47118068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 48573007 - 48573091
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| |||||| | |||||||| | |||||||||| |||||||||||| ||| |||| ||||||||||| ||||||||||||    
T  48573007 gactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcacttccgttatcacttt 48573091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 479
Target Start/End: Complemental strand, 11773142 - 11773068
Alignment:
Q  405 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||| |||||||| | |||||||||| |||||||||||| |||||||| ||||| ||||| ||||||||||||    
T  11773142 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtctctgactctacacttccgttatcacttt 11773068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 479
Target Start/End: Complemental strand, 33428554 - 33428452
Alignment:
Q  378 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 476  Q
    ||||||| ||| ||||| ||||||| |||||| | |||||||| | |||||||||||||||||||||||||||||  | |||||||| || |||| ||||    
T  33428554 atggtcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtccttgactctgcatttccgttgtcac 33428455  T
Q  477 ttt 479  Q
    |||    
T  33428454 ttt 33428452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 423 - 479
Target Start/End: Complemental strand, 48574532 - 48574476
Alignment:
Q  423 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||    
T  48574532 cctgactcaggattaaatacaaataagtccctgactctgcactttcgttatcacttt 48574476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 488
Target Start/End: Original strand, 19114545 - 19114648
Alignment:
Q  386 tttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtct 484  Q
    ||||||||| ||||||| || ||| | ||||| || | |||||||||  |||||||||||||||||| || ||| ||||||| |||||||||||| ||||    
T  19114545 tttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtcactaactttgcacttccgttatcactttagtct 19114644  T
Q  485 ctta 488  Q
    ||||    
T  19114645 ctta 19114648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 466
Target Start/End: Complemental strand, 52318418 - 52318347
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactt 466  Q
    ||||||| || ||||| |||||||||| |||||||||| |||||||||||| ||||| || |||||||||||    
T  52318418 gactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcactt 52318347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 479
Target Start/End: Complemental strand, 36280402 - 36280334
Alignment:
Q  411 ttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||||| |  ||||||||| |||||||| ||| |||||||| ||||||||||| ||||||||||||    
T  36280402 ttcacataggtctctgactcaggattaaatataaataagtctctgactctgcacttccgttatcacttt 36280334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 479
Target Start/End: Original strand, 2591666 - 2591733
Alignment:
Q  412 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||| | |||||||||| |||||||||||| |||||||| ||||||||||| | | ||||||||    
T  2591666 tcacataggtccctgactcaggattaaatacaaacaagtctctgactctgcacttccatgatcacttt 2591733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 479
Target Start/End: Original strand, 3671089 - 3671144
Alignment:
Q  424 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||||||||||||||||| |||||| | ||||| ||||| ||||||||||||    
T  3671089 ctgactcagaattaaatacaaataagtctatgactctccacttccgttatcacttt 3671144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 479
Target Start/End: Original strand, 20464088 - 20464175
Alignment:
Q  392 cccgactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||||| |||||| | ||||| || | |||| ||||  |||||||||||||||||| || |||||||||||  |||||||||||    
T  20464088 cccgactctgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtccctgactctgcacttctgttatcacttt 20464175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 475
Target Start/End: Original strand, 36278991 - 36279054
Alignment:
Q  412 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 475  Q
    |||||||| | ||||| |||| |||||||||||| |||||||| ||||||||||| ||||||||    
T  36278991 tcacataggtccctgattcaggattaaatacaaataagtctctgactctgcacttccgttatca 36279054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 479
Target Start/End: Complemental strand, 17702010 - 17701936
Alignment:
Q  405 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||| ||| |||| | |||||||||  |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  17702010 ctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatcacttt 17701936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 403 - 472
Target Start/End: Original strand, 47427890 - 47427959
Alignment:
Q  403 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgtta 472  Q
    |||||||| |||||||| | | ||||||| ||||||||||||||||||| || ||| ||||||| |||||    
T  47427890 acctcgctgtcacataggtccttgactcaaaattaaatacaaagaagtccctgactgtgcacttacgtta 47427959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 34263827 - 34263911
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| |||||||| ||||| || | | ||| |||| |||||||||||| |||||||| ||||| ||||| | ||||||||||    
T  34263827 gactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctgactctacacttccattatcacttt 34263911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 486
Target Start/End: Complemental strand, 49261618 - 49261547
Alignment:
Q  412 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    |||||||| | |||||||||| |||||||||||||   ||||| |||||||| || |||||||||||| ||||||    
T  49261618 tcacataggtccctgactcaggattaaatacaaag---tctctaactctgcatttccgttatcactttagtctct 49261547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 479
Target Start/End: Complemental strand, 55389569 - 55389486
Alignment:
Q  396 actctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||| |||||||| |||||||| |   ||||||| ||||||||||||  ||||| || ||||| ||||| ||||||||||||    
T  55389569 actctgcacctcgctgtcacataggtcattgactcaaaattaaatacaattaagtccctgactctacacttccgttatcacttt 55389486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 479
Target Start/End: Complemental strand, 2592098 - 2592024
Alignment:
Q  405 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||| |||||||| | |||||||||| |||||||||||| ||||| || ||||   |||| ||||||||||||    
T  2592098 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactcaatacttccgttatcacttt 2592024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 381 - 479
Target Start/End: Original strand, 30748006 - 30748105
Alignment:
Q  381 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||| ||||||||| || |||| |||||||| |||||||| | ||||||| || |||||||||||| |||||||| ||||| ||||||||||||||||||    
T  30748006 gtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacactttcgttatcacttt 30748105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 31218977 - 31219061
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| |||||||| |||||||| | | | |||||| |||||||||||||||||  || ||||||||||| ||||||||||||    
T  31218977 gactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagttcctgactctgcacttccgttatcacttt 31219061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 486
Target Start/End: Complemental strand, 31219279 - 31219170
Alignment:
Q  378 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 476  Q
    ||||||| |||| |||| ||||||| |||||||| |||||||| |   | |||||| |||||||||||||||||  || ||||  ||||| |||||||||    
T  31219279 atggtcactttaatccctgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagttcctgactcgacacttccgttatcac 31219180  T
Q  477 tttcgtctct 486  Q
    ||| ||||||    
T  31219179 tttagtctct 31219170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 395 - 486
Target Start/End: Complemental strand, 31091628 - 31091537
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    ||||||| |||| ||| |||||||| | |||||||||| |||||||||||| ||||| || ||||||||||| |||||||||||| ||||||    
T  31091628 gactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttagtctct 31091537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 395 - 476
Target Start/End: Complemental strand, 5915093 - 5915012
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 476  Q
    ||||||| |||||||||||| |||| |   ||||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  5915093 gactctgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtcactaactctgcacttccgttatcac 5915012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 395 - 484
Target Start/End: Complemental strand, 17466929 - 17466840
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtct 484  Q
    ||||||| |||||||| |||||||     ||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  17466929 gactctgcacctcgctgtcacataagccgctgactcaggattaaatacaaagaagtctctgactctgcacttccgttatcactttagtct 17466840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 405 - 486
Target Start/End: Original strand, 24458092 - 24458173
Alignment:
Q  405 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    |||||| |||||||| | ||||||||| ||||||||||||| |||| ||| ||||| |||||||||||||||||| ||||||    
T  24458092 ctcgctatcacataggtccctgactcaaaattaaatacaaataagtttctgactctacactttcgttatcactttagtctct 24458173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 32766340 - 32766256
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| |||||| | |||||||| | |||||||||| |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  32766340 gactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcacttt 32766256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 40000435 - 40000351
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| |||||||| | |||||||| ||||| | || |||||||||||| |||||||| || |||||||| ||||||||||||    
T  40000435 gactctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctctaaccctgcacttccgttatcacttt 40000351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 486
Target Start/End: Complemental strand, 15442072 - 15441981
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    |||||||| ||||||| ||||| ||||||||||||||| ||||||||||||| ||||  | | | ||||||||  |||||||||| ||||||    
T  15442072 gactctgttcctcgctgtcacaaagattcctgactcaggattaaatacaaagtagtccttgaatgtgcacttttattatcactttagtctct 15441981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 479
Target Start/End: Complemental strand, 17330314 - 17330247
Alignment:
Q  412 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||| | |||||||||| |||||||||||| |||||||| |||||||| || ||||||||||||    
T  17330314 tcacataggtccctgactcaggattaaatacaaataagtctctgactctgcatttccgttatcacttt 17330247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 405 - 479
Target Start/End: Original strand, 2910132 - 2910206
Alignment:
Q  405 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||| |||||||||| |||||||| | |||||||||||| |||||||| ||||||||||| | || |||||||    
T  2910132 ctcgctgtcacatagatccctgactcgggattaaatacaaataagtctctgactctgcacttcctttgtcacttt 2910206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 479
Target Start/End: Original strand, 14704056 - 14704112
Alignment:
Q  423 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||||| |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  14704056 cctgactcaggattaaatacaaataagtccctcactctgcacttccgttatcacttt 14704112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 479
Target Start/End: Complemental strand, 38985082 - 38985006
Alignment:
Q  403 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||| || ||||| |||||  |||||| ||||||||||||||||||||  | ||||||||||| ||||||||||||    
T  38985082 acctcactgtcacaaagatttatgactcggaattaaatacaaagaagtccttgactctgcacttccgttatcacttt 38985006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 475
Target Start/End: Original strand, 39015027 - 39015107
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 475  Q
    ||||||| ||||||||  ||||||||| | |||||||| |||||||||||| | |||| | ||||||||||||| ||||||    
T  39015027 gactctgcacctcgctgccacatagatccttgactcaggattaaatacaaatacgtctttgactctgcactttcattatca 39015107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 479
Target Start/End: Complemental strand, 31814416 - 31814361
Alignment:
Q  424 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||||||||||||| |||||||| | | ||||||||||| ||||||||||||    
T  31814416 ctgactcagaattaaatataaagaagtttttgactctgcacttccgttatcacttt 31814361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 479
Target Start/End: Original strand, 32764989 - 32765044
Alignment:
Q  424 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||||| |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  32764989 ctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcacttt 32765044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 473
Target Start/End: Original strand, 31090171 - 31090264
Alignment:
Q  381 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttat 473  Q
    |||| ||||||||| || |||| | |||||| |||||||| | | |||||||| |||||||| ||| |||||||| ||||||||||| ||||||    
T  31090171 gtcaatttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctgactctgcacttccgttat 31090264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 24459547 - 24459463
Alignment:
Q  395 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    ||||||| | |||||| |||||||| | ||||| |||| |||||||||||| |||||||| || ||||||||   ||||||||||    
T  24459547 gactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctgaccctgcacttctattatcacttt 24459463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 479
Target Start/End: Original strand, 17466084 - 17466147
Alignment:
Q  416 atagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||| ||| |||||||| ||||||||||||||  ||||| ||||||||||| |||| |||||||    
T  17466084 ataggttcttgactcaggattaaatacaaagatatctctgactctgcacttccgttttcacttt 17466147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 479
Target Start/End: Original strand, 5914309 - 5914410
Alignment:
Q  378 atggtcattttagtcccgactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcact 477  Q
    |||||||||||||| | |||| || |||||| | | | |||| |  |||||||| |||||||||||||||||||  | ||| ||||||  ||||||||||    
T  5914309 atggtcattttagttctgactttgcacctcgttgtgatataggtctctgactcacaattaaatacaaagaagtcagtgactttgcactcccgttatcact 5914408  T
Q  478 tt 479  Q
    ||    
T  5914409 tt 5914410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 479
Target Start/End: Original strand, 7073700 - 7073745
Alignment:
Q  434 attaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||||||| |||||||| | ||||||||| ||||||||||||    
T  7073700 attaaatacaaataagtctctgattctgcacttccgttatcacttt 7073745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 21733833 - 21733788
Alignment:
Q  434 attaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||||||| |||||||| ||||||||||| ||| ||||||||    
T  21733833 attaaatacaaataagtctctgactctgcacttccgtcatcacttt 21733788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 486
Target Start/End: Complemental strand, 39016451 - 39016393
Alignment:
Q  424 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    ||||||||| |||||||||||| |||||    ||||||||||| |||||||||||| ||||||    
T  39016451 ctgactcaggattaaatacaaataagtc----actctgcacttccgttatcactttagtctct 39016393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 479
Target Start/End: Complemental strand, 34037742 - 34037690
Alignment:
Q  427 actcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||| |||||||||||| |||||| | |||||||||||  |||||||||||    
T  34037742 actcaggattaaatacaaataagtctatgactctgcacttctgttatcacttt 34037690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 423 - 486
Target Start/End: Complemental strand, 5965515 - 5965452
Alignment:
Q  423 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    |||||||||| ||||||||||||||||||| | ||||||||||| |||||||||||| ||||||    
T  5965515 cctgactcaggattaaatacaaagaagtctttgactctgcacttccgttatcactttagtctct 5965452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 479
Target Start/End: Original strand, 5736893 - 5736948
Alignment:
Q  424 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  5736893 ctgattcagaattaaatacaaagaaatctctaactctacactttcgttatcacttt 5736948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 479
Target Start/End: Complemental strand, 32898561 - 32898462
Alignment:
Q  381 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||| ||||||||| ||||||| | ||| || |||||||| | ||||||| || |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  32898561 gtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccgttatcacttt 32898462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 405 - 479
Target Start/End: Original strand, 35177427 - 35177501
Alignment:
Q  405 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||| |||||||| | |||||||| | |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  35177427 ctcgctgtcacataggtccctgactccggattaaatacaaataagtccctgactctgcacttccgttatcacttt 35177501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 486
Target Start/End: Original strand, 45476218 - 45476275
Alignment:
Q  429 tcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    ||||||||||||||||| |||||||| |||||||||||  ||||||||||| ||||||    
T  45476218 tcagaattaaatacaaataagtctctgactctgcacttctgttatcactttagtctct 45476275  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 479
Target Start/End: Complemental strand, 41754910 - 41754812
Alignment:
Q  381 gtcattttagtcccgactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||| |||| ||| || |||| |||||||| ||||||||||  ||||||||| |||||||||||| ||||  || ||||| ||||| |||||| |||||    
T  41754910 gtcactttaatcctgattctgcacctcgctgtcacatagatctctgactcaggattaaatacaaacaagttcctgactctacacttccgttattacttt 41754812  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 479
Target Start/End: Complemental strand, 35178877 - 35178821
Alignment:
Q  423 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||||||| |||||||||||| ||||| || | ||||||||| ||||||||||||    
T  35178877 cctgactcaggattaaatacaaataagtccctgattctgcacttccgttatcacttt 35178821  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 485
Target Start/End: Original strand, 28619050 - 28619101
Alignment:
Q  434 attaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctc 485  Q
    ||||||||||||||| ||  | |||||||||||||||||||||||| |||||    
T  28619050 attaaatacaaagaaatcattgactctgcactttcgttatcactttagtctc 28619101  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 476
Target Start/End: Original strand, 1951991 - 1952045
Alignment:
Q  422 tcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 476  Q
    ||||||||||| |||||||||||| |||| ||| |||||||| |||| |||||||    
T  1951991 tcctgactcaggattaaatacaaataagtttctgactctgcattttcattatcac 1952045  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 472
Target Start/End: Original strand, 41754023 - 41754097
Alignment:
Q  398 tctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgtta 472  Q
    |||| |||| ||| |||||||| | |||||||||| |||||||| ||| ||||| || ||||| |||||||||||    
T  41754023 tctgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtccctgactctacactttcgtta 41754097  T

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Target: scaffold0767 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 424 - 486
Target Start/End: Original strand, 5650 - 5712
Alignment:
Q  424 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 486  Q
    |||||||||||||||||||||||||||| || ||||| ||||| |||||||||||| ||||||    
T  5650 ctgactcagaattaaatacaaagaagtccctgactctacacttccgttatcactttagtctct 5712  T

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Target: scaffold0034 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 405 - 479
Target Start/End: Original strand, 116087 - 116161
Alignment:
Q  405 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 479  Q
    |||||| |||||||| | |||||||||| |||||||||||| ||||| || ||| ||||||| ||||||||||||    
T  116087 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactatgcacttccgttatcacttt 116161  T

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