View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1530_low_10 (Length: 316)
Name: NF1530_low_10
Description: NF1530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1530_low_10 |
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| [»] scaffold0238 (1 HSPs) |
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Alignment Details
Target: scaffold0238 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 13196 - 12999
Alignment:
| Q |
13 |
aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagct |
112 |
Q |
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| T |
13196 |
aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagtt |
13097 |
T |
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| Q |
113 |
gaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaacagagg |
210 |
Q |
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| T |
13096 |
gaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaacagagg |
12999 |
T |
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Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 10453360 - 10453163
Alignment:
| Q |
13 |
aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagct |
112 |
Q |
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| T |
10453360 |
aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgacagaagcaaatgagaggcgtggagct |
10453261 |
T |
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| Q |
113 |
gaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaacagagg |
210 |
Q |
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| T |
10453260 |
gaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaactgagcatggcacacattaatcttttcctctttggttgtcaaacagagg |
10453163 |
T |
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Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 12603744 - 12603941
Alignment:
| Q |
13 |
aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagct |
112 |
Q |
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| T |
12603744 |
aatataatagaggagataagtgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagtt |
12603843 |
T |
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| Q |
113 |
gaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaacagagg |
210 |
Q |
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| T |
12603844 |
gaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaacagagg |
12603941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 23261892 - 23261698
Alignment:
| Q |
13 |
aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgat----agaagcaaatgagaggcgtgg |
108 |
Q |
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|||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||| |||||||| ||| |||||||||||||| |||||| |
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| T |
23261892 |
aataaaatagaggagataaatgaccgttttaagatcatgcttctaaaatagaggagatcaa-tcaagaagttgacctgaagaagcaaatgagaagcgtgg |
23261794 |
T |
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| Q |
109 |
agctgaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaa |
204 |
Q |
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| T |
23261793 |
agctgaagaagatatgtgggaaaattatttacttataaaatgaacaaaatcaattgagcatggcacacgttaatcttttccacttcggttgtcaaa |
23261698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 56478055 - 56478249
Alignment:
| Q |
13 |
aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgat----agaagcaaatgagaggcgtgg |
108 |
Q |
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| T |
56478055 |
aataaaatagaggagataaatgaccgtattaagatcatgcttctaaaatagaggagatcaa-tcaagaagttgacctgaagaagcaaatgagaagcgtgg |
56478153 |
T |
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| Q |
109 |
agctgaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaa |
204 |
Q |
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| T |
56478154 |
agctgaagaagatatgtgggaaaataatttacttaaaaaatgaacaaaatcaattgagcatggcacacgttaatcttttccacttcggttgtcaaa |
56478249 |
T |
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