View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1530_low_24 (Length: 236)
Name: NF1530_low_24
Description: NF1530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1530_low_24 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-131
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 42734441 - 42734206
Alignment:
| Q |
1 |
aatatcaaagacaattaaattggttttattatgtattataatccaaatcatggtgatatactaagctcaatttaaacttgcatatatggtgaatcttaaa |
100 |
Q |
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| T |
42734441 |
aatatcaaagacaattaaattggttttattatgtattataatccaaatcatggtgatatactaagctcaatttaaacttgcatatatggtgaatcttaaa |
42734342 |
T |
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| Q |
101 |
catttactatcataatttgtaaagattagtttatataaaggcaaattctatgtaatgccatttcaaggacttaagctacaagataaaatacatttaaatt |
200 |
Q |
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| T |
42734341 |
catttactatcataatttgtaaagattagtttatataaaggcaaattctatgtaatgccatttcaaggacttaagctacaagataaaatacatttaaatt |
42734242 |
T |
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| Q |
201 |
aagtaaagttactttgcactctcaaccaattaaaac |
236 |
Q |
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| T |
42734241 |
aagtaaagttactttgcactctcaaccaattaaaac |
42734206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 42763047 - 42763177
Alignment:
| Q |
2 |
atatcaaagacaattaaattggttttattatgtattataatccaaatcatggtgatatactaagctcaatttaaacttgcatatatggtgaatcttaaac |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| | |||| ||||||| |
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| T |
42763047 |
atatcaaagacaattaaattggttttattatgtattataatccaaatcatggttatatactaagctcaatttaaacttgtatatcttctgaagcttaaac |
42763146 |
T |
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| Q |
102 |
atttactatcataatttgtaaagattagttt |
132 |
Q |
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| T |
42763147 |
gtttaccatcataatttgtaaagattagttt |
42763177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 42744106 - 42744155
Alignment:
| Q |
150 |
atgtaatgccatttcaaggacttaagctacaagataaaatacatttaaat |
199 |
Q |
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| T |
42744106 |
atgtaataccattttaaggacttaaactactagataaaatacaattaaat |
42744155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 42753465 - 42753514
Alignment:
| Q |
150 |
atgtaatgccatttcaaggacttaagctacaagataaaatacatttaaat |
199 |
Q |
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||||||| |||||| |||||||||| |||| |||||||||||| |||||| |
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| T |
42753465 |
atgtaataccattttaaggacttaaactactagataaaatacaattaaat |
42753514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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