View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1530_low_3 (Length: 403)
Name: NF1530_low_3
Description: NF1530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1530_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 47254245 - 47254412
Alignment:
| Q |
21 |
gcaagatgaagggtttgagggagaagcttgtattcttcagcaacctcaaccaaccaatcaaccagtatccctctcatattagcagtgacacctctttgaa |
120 |
Q |
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| T |
47254245 |
gcaagatgaagggtttgagggagaagcttgtattcttcagcaacctcaaccaaccaatcaaccagtatccctctcatattagcagtaacacctctttgaa |
47254344 |
T |
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| Q |
121 |
ctttctcaatataaccaatcattggtcttctctttttctgaacctgagaaacaatcaaaccaataatt |
188 |
Q |
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| T |
47254345 |
ctttctcaatataaccaatcattggtcttctctttttctgaacctgagaaacaatcaaaccaaaaatt |
47254412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 240 - 391
Target Start/End: Original strand, 47254463 - 47254614
Alignment:
| Q |
240 |
ttacctccattgtgcgaagatagttggagatatcagatgcataaggctcaaaaatctcttcataatcagattttgcattgattttgctgaaatctggttt |
339 |
Q |
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| T |
47254463 |
ttacctccattgtgcgaagatagttggagatatcagatgcataagactcaaaaatctcttcataatcagattttgcattgattttgctgaaatctggttt |
47254562 |
T |
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| Q |
340 |
atcaaaattgaaaccataaaccaaacggacagcatcagatttctttggccta |
391 |
Q |
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| T |
47254563 |
atcaaaattgaaaccataaaccaaacggacagcatcagatttctttggccta |
47254614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 47242991 - 47243126
Alignment:
| Q |
24 |
agatgaagggtttgagggagaagcttgtattcttcagcaacctcaaccaaccaatcaaccagtatccctctcatattagcagtgacacctctttgaactt |
123 |
Q |
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| T |
47242991 |
agatgaagggtttctggaagaagcgtgtattcatctgcaacctcaaccaaccaatcaaccaatgtgcccctcatgtttgatgtaatgcctctttgaacat |
47243090 |
T |
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| Q |
124 |
tctcaatataaccaatcattggtcttctctttttct |
159 |
Q |
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| T |
47243091 |
tctccatataaccaaacattggtcttctctttttct |
47243126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 47249838 - 47249974
Alignment:
| Q |
42 |
agaagcttgtattcttcagcaacctcaaccaaccaatcaaccagtatccctctcatattagcagtgacacctctttgaactttctcaatataaccaatca |
141 |
Q |
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| T |
47249838 |
agaagcttgtattcatctgcaacctcaactaaccaatcaaccaatgtccccctcatgtttgatgaaatgcctctctgaacattctcaagataaccaacca |
47249937 |
T |
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| Q |
142 |
ttggtcttctctttttctgaacctgagaaacaatcaa |
178 |
Q |
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| T |
47249938 |
ttggtcttctctttttctgcatctgataaacattcaa |
47249974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 47250060 - 47250107
Alignment:
| Q |
240 |
ttacctccattgtgcgaagatagttggagatatcagatgcataaggct |
287 |
Q |
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| T |
47250060 |
ttacctccattgtgcgaagataatcagagatatcagatacataaggct |
47250107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 5434680 - 5434645
Alignment:
| Q |
44 |
aagcttgtattcttcagcaacctcaaccaaccaatc |
79 |
Q |
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| T |
5434680 |
aagcttgtattcttcagcaacttcaaccaaccaatc |
5434645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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