View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1530_low_4 (Length: 393)
Name: NF1530_low_4
Description: NF1530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1530_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 55696976 - 55696594
Alignment:
| Q |
1 |
ttgataagaaatgcttctcagtttttacatttcatattttaacagtctgtttgaaaaaacttggcagatagtggggagaatgacagctgaagaaaagaag |
100 |
Q |
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| T |
55696976 |
ttgataagagatgctgctcagtttttacatttcatattttaacagtctgtttgaaaaaacttggcagatagtggggagaatgacagctgaagaaaagaag |
55696877 |
T |
|
| Q |
101 |
gttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgtggtttgggttcccgtctccacatttacaagtcccatgaatctgggg |
200 |
Q |
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| T |
55696876 |
gttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgtggtttgggttcccgtctccacatttacaagtcccatgaatccggtg |
55696777 |
T |
|
| Q |
201 |
atcgttttccttcatctcatacatgcttttgccggctgtttttcccagcttattcatctatgcctgtcatgcaagctcgacttaaagtcattacccaaga |
300 |
Q |
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| T |
55696776 |
atcgtcttccttcatctcatacatgcttttatcggctgtgtttcccagcttattcatctatgcctgtcatgcaagctcgtcttaaagtcattacccaaga |
55696677 |
T |
|
| Q |
301 |
acatattggctctagttttggtacttggtgaacatacctgcaatctggaaagaaactggttttgatttgactgcacatagaat |
383 |
Q |
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| T |
55696676 |
acatattggctctagttttggtacttggtgaacatacctgcaatctggaaagaaactggttttgatttgactgcacatagaat |
55696594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 166
Target Start/End: Complemental strand, 9235337 - 9235226
Alignment:
| Q |
55 |
aaaaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgt |
154 |
Q |
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| T |
9235337 |
aaaaacttggcagatcgtcgggagaatgtcagcagagcaaaagaaagttcttctgttcttttggacatctgtgaaacatttaccagttgaaggtttccgt |
9235238 |
T |
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| Q |
155 |
ggtttgggttcc |
166 |
Q |
| |
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|| ||| ||||| |
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| T |
9235237 |
ggcttgagttcc |
9235226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 9246920 - 9246830
Alignment:
| Q |
57 |
aaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaagg |
147 |
Q |
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| T |
9246920 |
aaacttggcagatcgttgggagaatgccagcagagcaaaagaaggttcttctgttcttctggacatctgtgaaacatttaccagttgaagg |
9246830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 9255080 - 9254973
Alignment:
| Q |
54 |
aaaaaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcg |
153 |
Q |
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|||||||||||||||| || || |||||| |||| || ||| |||||||||||| ||||||||||| ||||||||| ||||||||||| |||| || | |
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| T |
9255080 |
aaaaaacttggcagatcgttggaagaatgtcagcagagcaaaggaaggttcttctgttcttttggacatctgtgaaacatttaccagttaaaggtttcca |
9254981 |
T |
|
| Q |
154 |
tggtttgg |
161 |
Q |
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|||||||| |
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| T |
9254980 |
tggtttgg |
9254973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 9265047 - 9264993
Alignment:
| Q |
93 |
aaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaagg |
147 |
Q |
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|||||||||||||||| ||||||||||| || |||||| |||||||||| ||||| |
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| T |
9265047 |
aaaagaaggttcttctgttcttttggacatcagtgaaacatttaccagtcgaagg |
9264993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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