View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1530_low_6 (Length: 361)
Name: NF1530_low_6
Description: NF1530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1530_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 10925755 - 10925918
Alignment:
| Q |
19 |
acctcgtgttgtgagagagacaaatctttaactttaccagcttcaaaaccctaggggtgggagattttataatgagcggttaagattcatgataactgtg |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
10925755 |
acctcatgttgtgagagagacaaatctttaagtttaccagcttcaaaaccctaggggtgggagatttgataatgagcggttaagattcaatataactgtg |
10925854 |
T |
|
| Q |
119 |
aattactatgagtctctaataggtttaagggtctcgtaatacattcctaatagttcctagatag |
182 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10925855 |
aattactatgagtcttcaataggtttaagggtctcgtaatacattcctaatagttcctagatag |
10925918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 34307697 - 34307807
Alignment:
| Q |
244 |
tgatcgattcatctcatgaatcttcttgattattcaatttatgaatttttatcttcaattttcattcctctgttcatttgattccttgattattctattt |
343 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
34307697 |
tgatcgattcatctcaagaatcctcttgattattcaatttctgaatttttatcttcagttttcattccgctgttcatttgattccttgattatttgattt |
34307796 |
T |
|
| Q |
344 |
ctttcatctct |
354 |
Q |
| |
|
||||||||||| |
|
|
| T |
34307797 |
ctttcatctct |
34307807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 4498151 - 4498261
Alignment:
| Q |
244 |
tgatcgattcatctcatgaatcttcttgattattcaatttatgaatttttatcttcaattttcattcctctgttcatttgattccttgattattctattt |
343 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||| ||||||||||| |||| |||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
4498151 |
tgatcgattcatctcaagaatcctctttattattcaatttctgaatttttattttcagttttcattccgctgttcatttgattccttgattatttgattt |
4498250 |
T |
|
| Q |
344 |
ctttcatctct |
354 |
Q |
| |
|
||||||||||| |
|
|
| T |
4498251 |
ctttcatctct |
4498261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 15821703 - 15821813
Alignment:
| Q |
244 |
tgatcgattcatctcatgaatcttcttgattattcaatttatgaatttttatcttcaattttcattcctctgttcatttgattccttgattattctattt |
343 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||| ||||||||||| |||| |||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
15821703 |
tgatcgattcatctcaagaatcctctttattattcaatttctgaatttttattttcagttttcattccgctgttcatttgattccttgattatttgattt |
15821802 |
T |
|
| Q |
344 |
ctttcatctct |
354 |
Q |
| |
|
||||||||||| |
|
|
| T |
15821803 |
ctttcatctct |
15821813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 244 - 354
Target Start/End: Complemental strand, 26087501 - 26087391
Alignment:
| Q |
244 |
tgatcgattcatctcatgaatcttcttgattattcaatttatgaatttttatcttcaattttcattcctctgttcatttgattccttgattattctattt |
343 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||| ||||||||||| |||| |||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
26087501 |
tgatcgattcatctcaagaatcctctttattattcaatttctgaatttttattttcagttttcattccgctgttcatttgattccttgattatttgattt |
26087402 |
T |
|
| Q |
344 |
ctttcatctct |
354 |
Q |
| |
|
||||||||||| |
|
|
| T |
26087401 |
ctttcatctct |
26087391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 244 - 354
Target Start/End: Complemental strand, 26111289 - 26111179
Alignment:
| Q |
244 |
tgatcgattcatctcatgaatcttcttgattattcaatttatgaatttttatcttcaattttcattcctctgttcatttgattccttgattattctattt |
343 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||| ||| ||||||| |||| |||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
26111289 |
tgatcgattcatctcaagaatcctctttattattcaatttctgattttttattttcagttttcattccgctgttcatttgattccttgattatttgattt |
26111190 |
T |
|
| Q |
344 |
ctttcatctct |
354 |
Q |
| |
|
||||||||||| |
|
|
| T |
26111189 |
ctttcatctct |
26111179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 244 - 354
Target Start/End: Complemental strand, 553090 - 552980
Alignment:
| Q |
244 |
tgatcgattcatctcatgaatcttcttgattattcaatttatgaatttttatcttcaattttcattcctctgttcatttgattccttgattattctattt |
343 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||| ||||||||||| |||| |||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
553090 |
tgatcgattcatctcaagaatcctctttattattcaatttctgaatttttattttcagttttcattccgctgttcatttgattccttgattatttgattt |
552991 |
T |
|
| Q |
344 |
ctttcatctct |
354 |
Q |
| |
|
||||||||||| |
|
|
| T |
552990 |
ctttcatctct |
552980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 244 - 354
Target Start/End: Complemental strand, 30283502 - 30283392
Alignment:
| Q |
244 |
tgatcgattcatctcatgaatcttcttgattattcaatttatgaatttttatcttcaattttcattcctctgttcatttgattccttgattattctattt |
343 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||| ||||||||||| |||| |||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
30283502 |
tgatcgattcatctcaagaatcctctttattattcaatttctgaatttttattttcagttttcattccgctgttcatttgattccttgattatttgattt |
30283403 |
T |
|
| Q |
344 |
ctttcatctct |
354 |
Q |
| |
|
||||||||||| |
|
|
| T |
30283402 |
ctttcatctct |
30283392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University