View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1530_low_8 (Length: 336)
Name: NF1530_low_8
Description: NF1530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1530_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 12165090 - 12165235
Alignment:
| Q |
18 |
gcaaccacaacaaaaaatcaccattatgaacacaaatccatcgtattcggttgaataaacaacttaattaagctcttatagtaaaagataaaatcaaatc |
117 |
Q |
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| T |
12165090 |
gcaaccacaacaaaaaatcaccattatgaacacaaatccatcgtcttcggttgaataaacaacttaattaagctcttatagcaaaagataaaataaaata |
12165189 |
T |
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| Q |
118 |
aaattgtttatattggttgtaaactatgaagcacggatgcggacac |
163 |
Q |
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| T |
12165190 |
aaattgtttatattggttgtaaactatgaagcacggatgcagacac |
12165235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 12165328 - 12165434
Alignment:
| Q |
220 |
attattagtagtattatatcttaccataggcagcagggttattaagaatatcaccaaagacaccataagtgtttccatatacaaacttggcatcagaatg |
319 |
Q |
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| T |
12165328 |
attattagtagtattaaatcttaccataggcagcagggttattaagaatatcaccaaagacaccataagtgtttccatatacaaacttggcatcagaatg |
12165427 |
T |
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| Q |
320 |
gtctctg |
326 |
Q |
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||||||| |
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| T |
12165428 |
gtctctg |
12165434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 14216843 - 14216885
Alignment:
| Q |
141 |
ctatgaagcacggatgcggacacagacactgacacggatactga |
184 |
Q |
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| T |
14216843 |
ctatgaagcacggatgcggacacagacac-gacacggacactga |
14216885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 14222972 - 14223014
Alignment:
| Q |
141 |
ctatgaagcacggatgcggacacagacactgacacggatactga |
184 |
Q |
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| T |
14222972 |
ctatgaagcacggatgcggacacagacac-gacacggacactga |
14223014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 48588564 - 48588592
Alignment:
| Q |
68 |
ttgaataaacaacttaattaagctcttat |
96 |
Q |
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| T |
48588564 |
ttgaataaacaacttaattaagctcttat |
48588592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 19213773 - 19213807
Alignment:
| Q |
141 |
ctatgaagcacggatgcggacacagacactgacac |
175 |
Q |
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| T |
19213773 |
ctatgaagcacggatgcggacacggacactgacac |
19213807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 176
Target Start/End: Original strand, 25791616 - 25791650
Alignment:
| Q |
142 |
tatgaagcacggatgcggacacagacactgacacg |
176 |
Q |
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| T |
25791616 |
tatgaagcacggatacggacacagacactgacacg |
25791650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 11560663 - 11560630
Alignment:
| Q |
93 |
ttatagtaaaagataaaatcaaatcaaattgttt |
126 |
Q |
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| T |
11560663 |
ttatagcaaaagataaaatcaaatcaaattgttt |
11560630 |
T |
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