View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1530_low_9 (Length: 325)
Name: NF1530_low_9
Description: NF1530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1530_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 42733895 - 42734093
Alignment:
| Q |
7 |
atgttgtcattttattgctacaaccttatgttttttccggttatttctttatggtgaccaaactcgatttttcaatgaagagattcaaattgatctaaag |
106 |
Q |
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| T |
42733895 |
atgttgtcattttattgctacaaccttatgttttttccggttatttctttatggtgaccaaacttgatttttcaatgaagagattcaaattgatctaaag |
42733994 |
T |
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| Q |
107 |
cattctaagaccgaaagtgttactatgataagtgtgaagaatgtatcatttaaccattataaaactaggcatgaaaggtgaaaggaggaagtggatatg |
205 |
Q |
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| T |
42733995 |
cattcaaagaccgaaagtgttactatgataagtgtgaagaatgtatcatttaaccattataaaactaggcatgaaaggtgaaaggaggaagtggatatg |
42734093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 42734136 - 42734211
Alignment:
| Q |
248 |
catgaattggtggcaattattactccagatttttcttgannnnnnnnnaacctctgtgtcttaaagaatggtttta |
323 |
Q |
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| T |
42734136 |
catgaattggtggcaattattactccagatttttcttgatttttttttaacctctgtgtcttaaagaatggtttta |
42734211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 22973801 - 22973691
Alignment:
| Q |
38 |
tttttccggttatttctttatggtg--accaaactcgatttttcaatgaagagattcaaattgatctaaagcattctaagaccgaaagtgttactatgat |
135 |
Q |
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| T |
22973801 |
tttttccggttatttctttatggtgtgaccaagctcgatttttcaatgaaaagatttaaattgatctaaagtattctaagaccggaagtgttaccatgat |
22973702 |
T |
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| Q |
136 |
aagtgtgaaga |
146 |
Q |
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| T |
22973701 |
aagtgtgaaga |
22973691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 16034929 - 16034862
Alignment:
| Q |
50 |
tttctttatggtgaccaaactcgatttttcaatgaagagattcaaattgatctaaagcattctaagac |
117 |
Q |
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| T |
16034929 |
tttctttatggggatcaagctcgatttttcaatgatgagattcatattgatctaaagcattctaagac |
16034862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 31431247 - 31431314
Alignment:
| Q |
50 |
tttctttatggtgaccaaactcgatttttcaatgaagagattcaaattgatctaaagcattctaagac |
117 |
Q |
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| T |
31431247 |
tttctttatggggatcaagctcgatttttcaatgatgagattcatattgatctaaagcattctaagac |
31431314 |
T |
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