View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1531-INSERTION-1 (Length: 480)

Name: NF1531-INSERTION-1
Description: NF1531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1531-INSERTION-1
NF1531-INSERTION-1
[»] chr3 (14 HSPs)
chr3 (111-480)||(27205870-27206239)
chr3 (116-366)||(13003415-13003665)
chr3 (116-366)||(31251921-31252171)
chr3 (116-366)||(31094209-31094462)
chr3 (8-119)||(27206427-27206538)
chr3 (12-112)||(31093879-31093979)
chr3 (12-112)||(13003079-13003179)
chr3 (12-112)||(31252407-31252507)
chr3 (399-480)||(13003710-13003791)
chr3 (411-480)||(31094522-31094591)
chr3 (399-480)||(31251795-31251876)
chr3 (280-380)||(27228710-27228810)
chr3 (117-220)||(16162788-16162891)
chr3 (14-56)||(27229150-27229192)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 111 - 480
Target Start/End: Complemental strand, 27206239 - 27205870
Alignment:
Q  111 accaactctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctat 210  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27206239 accatctctcgcagttctgtaatagttttagaaagatcgaataaaacgtcatttctaccaatctctcccactacaaacaacaattttttgaagaagctat 27206140  T
Q  211 cacattctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaataatatgcagggagttaggacaaa 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27206139 cacattctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaatagtatgcagggagttaggacaaa 27206040  T
Q  311 accttctttagttttacacaaggagggtttaagcttcttaaaccaatcaaattgcatattcaaagagttaatgactctaccacctttgaaataattgaca 410  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27206039 accttctttagttttacacgatgagggtttaagcttcttaaaccaatcaaattgcatattcaaagagttaatgactctaccacctttgaaataattgaca 27205940  T
Q  411 tcaagtgcagttgcaccaccataagcaaaattaactcccttttttacatcatcttgacttttggtgatat 480  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27205939 tcaagtgcagttgcaccgccataagcaaaattaactcccttttttacatcatcttgacttttggtgatat 27205870  T

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Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 116 - 366
Target Start/End: Original strand, 13003415 - 13003665
Alignment:
Q  116 ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat 215  Q
    |||||| | |||| ||||||||||||||||||   | ||||  | ||||| ||||||||||||||||| ||||||  |||||||||||||||| ||||||    
T  13003415 ctctcgtagttctttaatagttttagaaagatgataaaaaatatcatttccaccaatctctcccactataaacaatgattttttgaagaagctgtcacat 13003514  T
Q  216 tctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaataatatgcagggagttaggacaaaacctt 315  Q
    |||||||||||| || |||||||| |||||||||||||| || | || |||| |||||| ||| |||||||||| ||||| ||| |||||||||||||||    
T  13003515 tctgtgaactcataaaaaaacaaaagttttgttagtcatatagatgataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaacctt 13003614  T
Q  316 ctttagttttacacaaggagggtttaagcttcttaaaccaatcaaattgca 366  Q
    ||||  ||||||| |||  |||||| |||||||||||||||||||||||||    
T  13003615 ctttgcttttacataagtcgggttttagcttcttaaaccaatcaaattgca 13003665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 116 - 366
Target Start/End: Complemental strand, 31252171 - 31251921
Alignment:
Q  116 ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat 215  Q
    |||||| | |||||||||||||||||||||||   | ||||  | ||||| ||||||||||||||||| ||||||  | |||||||||||||| ||||||    
T  31252171 ctctcgtagttctgtaatagttttagaaagatgataaaaaatatcatttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacat 31252072  T
Q  216 tctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaataatatgcagggagttaggacaaaacctt 315  Q
    |||||||||||| || |||||||| |||||||||||||| || | || |||| |||||| ||| |||||||||| ||| | ||| |||||||||||||||    
T  31252071 tctgtgaactcataaaaaaacaaaagttttgttagtcatatagatgataaaccatttatatcacacaaaaataacatgtaaggatttaggacaaaacctt 31251972  T
Q  316 ctttagttttacacaaggagggtttaagcttcttaaaccaatcaaattgca 366  Q
    ||||| ||||||| |||  |||||| |||||||||||||||||||||||||    
T  31251971 ctttacttttacataagtcgggttttagcttcttaaaccaatcaaattgca 31251921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 116 - 366
Target Start/End: Original strand, 31094209 - 31094462
Alignment:
Q  116 ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat 215  Q
    |||| ||| |||||||||||||||  |||||| | | ||||  | ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  31094209 ctcttgcagttctgtaatagttttgaaaagatggtaaaaaatatcatttccaccaatctctcccactataaacaacgattttttgaagaagctatcacat 31094308  T
Q  216 tctgtgaactcac---aacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaataatatgcagggagttaggacaaaac 312  Q
    |||||||||||||   || |||| ||| |||||||||||||| |  | || |||  |||||| ||| |||||||||| | ||| ||||||||||||||||    
T  31094309 tctgtgaactcacaagaagaaaaaaaaagttttgttagtcatattgatgataaatcatttatatcacacaaaaataacaagcaaggagttaggacaaaac 31094408  T
Q  313 cttctttagttttacacaaggagggtttaagcttcttaaaccaatcaaattgca 366  Q
    |||||||  ||||||||||  ||||||| |||||||||||||||||||||||||    
T  31094409 cttctttgtttttacacaataagggttttagcttcttaaaccaatcaaattgca 31094462  T

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Target: chr3; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 27206538 - 27206427
Alignment:
Q  8 gtatgctatcaaacatccaaatttatcatagtcttctttcttctgactaattttatttgacaataagtgagcagtacaccctattgaaaatttccctgaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||  || |||||| ||    
T  27206538 gtatgctatcaaacatccaaatttatcatagtcttctttcttctgactaatcttatttgacaataagtgagcagtacatcctattgggaagttccctaaa 27206439  T
Q  108 accaccaactct 119  Q
    ||||||||||||    
T  27206438 accaccaactct 27206427  T

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Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 31093879 - 31093979
Alignment:
Q  12 gctatcaaacatccaaatttatcatagtcttctttcttctgactaattttatttgacaataagtgagcagtacaccctattgaaaatttccctgaaacca 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| || || | |||||||||||| ||| || ||||||||||    
T  31093879 gctatcaaacatccaaattcatcatagtcttctttcttctgactaatcttttttgacaatatgtcagtattacaccctattggaaagtttcctgaaacca 31093978  T
Q  112 c 112  Q
    |    
T  31093979 c 31093979  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 13003079 - 13003179
Alignment:
Q  12 gctatcaaacatccaaatttatcatagtcttctttcttctgactaattttatttgacaataagtgagcagtacaccctattgaaaatttccctgaaacca 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| || || | ||||||| |||| ||| ||||||| |||||    
T  13003079 gctatcaaacatccaaattcatcatagtcttctttcttctgactaatcttttttgacaatatgtcagtattacaccccattggaaagttccctggaacca 13003178  T
Q  112 c 112  Q
    |    
T  13003179 c 13003179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 31252507 - 31252407
Alignment:
Q  12 gctatcaaacatccaaatttatcatagtcttctttcttctgactaattttatttgacaataagtgagcagtacaccctattgaaaatttccctgaaacca 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| || || | ||||||| |||| ||| ||||||| |||||    
T  31252507 gctatcaaacatccaaattcatcatagtcttctttcttctgactaatcttttttgacaatatgtcagtattacaccccattggaaagttccctggaacca 31252408  T
Q  112 c 112  Q
    |    
T  31252407 c 31252407  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 13003710 - 13003791
Alignment:
Q  399 aaataattgacatcaagtgcagttgcaccaccataagcaaaattaactcccttttttacatcatcttgacttttggtgatat 480  Q
    ||||| ||||||||||||||||||| |||  ||||||| ||||||||||||||||||| ||||||| |  ||||||||||||    
T  13003710 aaatatttgacatcaagtgcagttgaaccggcataagcgaaattaactcccttttttatatcatctgggattttggtgatat 13003791  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 411 - 480
Target Start/End: Original strand, 31094522 - 31094591
Alignment:
Q  411 tcaagtgcagttgcaccaccataagcaaaattaactcccttttttacatcatcttgacttttggtgatat 480  Q
    ||||||||||||| |||  ||||||| |||||||||||||||||||||||| |||| |||||||||||||    
T  31094522 tcaagtgcagttgaaccggcataagcgaaattaactcccttttttacatcaccttggcttttggtgatat 31094591  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 31251876 - 31251795
Alignment:
Q  399 aaataattgacatcaagtgcagttgcaccaccataagcaaaattaactcccttttttacatcatcttgacttttggtgatat 480  Q
    ||||| ||||||||||||||||||| |||  |||| || ||||||||||||||||||| ||||||| |  ||||||||||||    
T  31251876 aaatatttgacatcaagtgcagttgaaccggcataggcgaaattaactcccttttttatatcatctgggattttggtgatat 31251795  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 380
Target Start/End: Complemental strand, 27228810 - 27228710
Alignment:
Q  280 acaaaaataatatgcagggagttaggacaaaaccttctttagttttacacaaggagggtttaagcttcttaaaccaatcaaattgcatattcaaagagtt 379  Q
    |||||||||||| ||| | ||||| |||||||||||||| | |||||||||| || ||||| |  ||||||||||| |||||||||| ||| || |||||    
T  27228810 acaaaaataatacgcaagtagttatgacaaaaccttcttcacttttacacaatgatggttttatattcttaaaccattcaaattgcacatttaatgagtt 27228711  T
Q  380 a 380  Q
    |    
T  27228710 a 27228710  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 220
Target Start/End: Complemental strand, 16162891 - 16162788
Alignment:
Q  117 tctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacatt 216  Q
    ||||||| |||||||||||||||||||| ||  || ||||| | ||||| |||||| |||||||||| ||| ||  ||  |||||||||||||||||| |    
T  16162891 tctcgcagttctgtaatagttttagaaatatgtaaaaaaacatcatttccaccaatttctcccactataaataatgatcgtttgaagaagctatcacact 16162792  T
Q  217 ctgt 220  Q
    ||||    
T  16162791 ctgt 16162788  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 27229192 - 27229150
Alignment:
Q  14 tatcaaacatccaaatttatcatagtcttctttcttctgacta 56  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  27229192 tatcaaacatccaaattcatcataatcttctttcttctgacta 27229150  T

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