View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1531-INSERTION-2 (Length: 336)

Name: NF1531-INSERTION-2
Description: NF1531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1531-INSERTION-2
NF1531-INSERTION-2
[»] chr4 (16 HSPs)
chr4 (10-336)||(6624374-6624700)
chr4 (13-336)||(6813470-6813793)
chr4 (12-336)||(6589984-6590308)
chr4 (12-320)||(6750559-6750867)
chr4 (12-336)||(6535599-6535923)
chr4 (12-322)||(6672365-6672675)
chr4 (12-322)||(6648765-6649075)
chr4 (12-336)||(6500295-6500619)
chr4 (32-336)||(6794140-6794444)
chr4 (12-319)||(6725643-6725950)
chr4 (13-322)||(6713521-6713830)
chr4 (12-319)||(6547850-6548148)
chr4 (13-317)||(6833892-6834193)
chr4 (12-285)||(6756212-6756485)
chr4 (208-322)||(8412601-8412715)
chr4 (29-164)||(8412731-8412866)
[»] scaffold0373 (1 HSPs)
scaffold0373 (105-336)||(11933-12164)
[»] chr8 (2 HSPs)
chr8 (156-202)||(3264525-3264571)
chr8 (140-204)||(7166647-7166711)
[»] chr7 (1 HSPs)
chr7 (258-304)||(18928737-18928783)
[»] chr6 (2 HSPs)
chr6 (138-196)||(5368318-5368376)
chr6 (138-196)||(5423611-5423669)


Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 336
Target Start/End: Original strand, 6624374 - 6624700
Alignment:
Q  10 cgcgtatcttgaatgccgttgttttgtaaacatcacagagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaa 109  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6624374 cgcgtatcttgaatgccgttgttttgtaaacatcacaaagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaa 6624473  T
Q  110 aagaaagctccgtccgtcgaattttctcccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattcctaaaagt 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6624474 aagaaagctccgtccatcgaattttctcccaatttgattataaatcgctttggcaatggttgttttacccacaccccccattccccatattcctaaaagt 6624573  T
Q  210 aaaacatcttcggagttttggatgttgagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataattctgtccgat 309  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6624574 aaaacatcttcggagttttggatattgagtagcttagtcacagcatccacacgagattctacacccactggatgttcagcaacgaataattctgtcctat 6624673  T
Q  310 ctagcaaacgggtcacgtgtttaacaa 336  Q
    |||||||||||||||||||||||||||    
T  6624674 ctagcaaacgggtcacgtgtttaacaa 6624700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 336
Target Start/End: Complemental strand, 6813793 - 6813470
Alignment:
Q  13 gtatcttgaatgccgttgttttgtaaacatcacagagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaag 112  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||| || |||||||| ||||| | ||||||||| |||| ||| || || |||| |||    
T  6813793 gtatcttgaatgccgttgttttgcaaacatcacaaagtatttgttgctgtagagaaacttgattagtatctgtctcccaaagttccctaatgttcagaag 6813694  T
Q  113 aaagctccgtccgtcgaattttctcccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattcctaaaagtaaa 212  Q
    |||||||| ||| || ||||| |||||||||||||||||||| |||||||||  |||||||||||||| |||||||||||||||||| |||| |||||||    
T  6813693 aaagctccttccctcaaatttgctcccaatttgattataaattgctttggcaagggttgttttacccataccccccattccccatatccctagaagtaaa 6813594  T
Q  213 acatcttcggagttttggatgttgagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataattctgtccgatcta 312  Q
    |||||||| ||||||| |||||| ||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  6813593 acatcttctgagttttcgatgtttagtagtttagtcacagtttccacgcgagattctacacccactggatgttcagcaacgaataactctgtcctatcta 6813494  T
Q  313 gcaaacgggtcacgtgtttaacaa 336  Q
     ||||||||| || |||| |||||    
T  6813493 acaaacgggtgacatgttcaacaa 6813470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 12 - 336
Target Start/End: Original strand, 6589984 - 6590308
Alignment:
Q  12 cgtatcttgaatgccgttgttttgtaaacatcacagagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaa 111  Q
    ||||||||||||| |  ||||||||||||||||   ||||| | ||| || |||||||| ||||| | ||||||||| || || ||||||||||||| ||    
T  6589984 cgtatcttgaatgtcaatgttttgtaaacatcatcaagtatcttttgctgtagagaaacttgattagtatctgtctcccataactctcttatattcagaa 6590083  T
Q  112 gaaagctccgtccgtcgaattttctcccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattcctaaaagtaa 211  Q
    ||||||||| ||| || ||||| |||||||||||||||||||| |||||||||  ||||||||| |||| |||||||||||||||||| || |||| |||    
T  6590084 gaaagctccttccctcaaatttgctcccaatttgattataaattgctttggcaagggttgttttccccataccccccattccccatatccccaaaattaa 6590183  T
Q  212 aacatcttcggagttttggatgttgagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataattctgtccgatct 311  Q
    |||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  6590184 aacatcatctgagttttggatgtttagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataactctgtcctatct 6590283  T
Q  312 agcaaacgggtcacgtgtttaacaa 336  Q
    | ||||||||| | ||||| |||||    
T  6590284 aacaaacgggtgatgtgttcaacaa 6590308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 12 - 320
Target Start/End: Complemental strand, 6750867 - 6750559
Alignment:
Q  12 cgtatcttgaatgccgttgttttgtaaacatcacagagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaa 111  Q
    ||||||||||||   ||||||||||||||||||||||||| |||||| || || ||||| ||||| | || |||||| |||||||| ||||||| || ||    
T  6750867 cgtatcttgaattttgttgttttgtaaacatcacagagtacttgttgctgtagtgaaacttgattagtatgtgtctcccaaaattcccttatatccataa 6750768  T
Q  112 gaaagctccgtccgtcgaattttctcccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattcctaaaagtaa 211  Q
    | ||||||| ||| || ||||| |||||||||| ||| ||||| ||||||||| ||||||||||||||  |||||||||||||||||| ||||  |  ||    
T  6750767 ggaagctccttccctcaaatttgctcccaatttcattgtaaatggctttggcaatggttgttttacccgtaccccccattccccatatccctagcataaa 6750668  T
Q  212 aacatcttcggagttttggatgttgagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataattctgtccgatct 311  Q
     |||||||| || ||||||||||| || ||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| ||||    
T  6750667 cacatcttctgatttttggatgttaaggagcttagtcgcagcttccacacgagattctacacccaccggatgttcagcaacaaataactctgtcctatct 6750568  T
Q  312 agcaaacgg 320  Q
    | |||||||    
T  6750567 aacaaacgg 6750559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 12 - 336
Target Start/End: Original strand, 6535599 - 6535923
Alignment:
Q  12 cgtatcttgaatgccgttgttttgtaaacatcacagagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaa 111  Q
    |||||||||||||  |||||||||||||||||||| |||| |||||| || || ||||| ||||| | | ||||||| |||||||| |||||||||| ||    
T  6535599 cgtatcttgaatgaagttgttttgtaaacatcacaaagtacttgttgctgtagtgaaacttgattagtacctgtctcccaaaattcccttatattcagaa 6535698  T
Q  112 gaaagctccgtccgtcgaattttctcccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattcctaaaagtaa 211  Q
    | ||||||  ||| || || || || ||||||| ||||||||| ||||||||| |||||||||| || | |||||||||||||||||| |||| ||||||    
T  6535699 ggaagctctttccatcaaacttgctaccaatttcattataaatggctttggcaatggttgttttgcctataccccccattccccatatccctagaagtaa 6535798  T
Q  212 aacatcttcggagttttggatgttgagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataattctgtccgatct 311  Q
     |||||||| | |||||||||||| | |||||||||  |||||| |||||||||||| |  |||||||||||||||||||| ||||| ||| ||| ||||    
T  6535799 gacatcttctgcgttttggatgtttaatagcttagttgcagcttgcacacgagattcaattcccactggatgttcagcaacaaataactctttcctatct 6535898  T
Q  312 agcaaacgggtcacgtgtttaacaa 336  Q
    |||||||| || || |||| |||||    
T  6535899 agcaaacgagtaacatgttcaacaa 6535923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 12 - 322
Target Start/End: Complemental strand, 6672675 - 6672365
Alignment:
Q  12 cgtatcttgaatgccgttgttttgtaaacatcacagagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaa 111  Q
    ||||||||||||| |||||||||||| |||||||| ||||  ||||| || ||||||||  ||||   |  |||||| |||||||| |||||| ||| ||    
T  6672675 cgtatcttgaatgtcgttgttttgtagacatcacaaagtacctgttgctgtagagaaactagattaatacatgtctcccaaaattcccttataatcagaa 6672576  T
Q  112 gaaagctccgtccgtcgaattttctcccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattcctaaaagtaa 211  Q
    | ||||||| ||| || ||||| |||||||||||||| ||||| ||||||||| || |||| || |||| |||||||||||||||||| |||| ||||||    
T  6672575 ggaagctccttccctcaaatttgctcccaatttgattgtaaatggctttggcaatgtttgtcttgcccataccccccattccccatatccctagaagtaa 6672476  T
Q  212 aacatcttcggagttttggatgttgagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataattctgtccgatct 311  Q
    ||||||||| || || |||||||| |||||||||||   ||||||||||| ||||||||||||||| |||||||||| ||||||||| ||||||  ||||    
T  6672475 aacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctacacccaccggatgttcagtaacgaataactctgtcttatct 6672376  T
Q  312 agcaaacgggt 322  Q
    || ||||||||    
T  6672375 aggaaacgggt 6672365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 12 - 322
Target Start/End: Complemental strand, 6649075 - 6648765
Alignment:
Q  12 cgtatcttgaatgccgttgttttgtaaacatcacagagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaa 111  Q
    ||||||||||||| ||| ||||||||||||||||| || | ||||||||| ||||||||  ||||   || |||||| ||||||||||||||||||| ||    
T  6649075 cgtatcttgaatgtcgtagttttgtaaacatcacaaagaagttgttgttgtagagaaactagattaatatttgtctcccaaaattctcttatattcagaa 6648976  T
Q  112 gaaagctccgtccgtcgaattttctcccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattcctaaaagtaa 211  Q
    | |||||||  || || |||||  ||||||||||||||||||| ||||||||| |||| ||||| ||    |||||||||||||| || || | |||| |    
T  6648975 ggaagctcctcccctcaaatttgttcccaatttgattataaatggctttggcaatggtagtttttccagttccccccattccccagatcccaagaagtga 6648876  T
Q  212 aacatcttcggagttttggatgttgagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataattctgtccgatct 311  Q
    ||||||||| || | ||||||||| |||||||||||  ||||||||||||||| || |||||||||||||||||| ||||| ||||| ||||||| ||||    
T  6648875 aacatcttctgaatattggatgtttagtagcttagttgcagcttccacacgaggttgtacacccactggatgttcggcaacaaataactctgtcctatct 6648776  T
Q  312 agcaaacgggt 322  Q
    |||||| ||||    
T  6648775 agcaaatgggt 6648765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 12 - 336
Target Start/End: Original strand, 6500295 - 6500619
Alignment:
Q  12 cgtatcttgaatgccgttgttttgtaaacatcacagagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaa 111  Q
    ||||||||||||   |||||||||||||||||||| || |  | ||| || || ||||| ||||| | |||||| || ||||| || |||||||||| ||    
T  6500295 cgtatcttgaattttgttgttttgtaaacatcacaaagcaccttttgctgtagtgaaacttgattagtatctgtttcccaaaactcccttatattcagaa 6500394  T
Q  112 gaaagctccgtccgtcgaattttctcccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattcctaaaagtaa 211  Q
    | |||||||  || || ||||  |||||||||||||||||||| ||||||||| ||||||| || |||  |||||||||||||||||| |||| || |||    
T  6500395 ggaagctcctaccctcaaattcgctcccaatttgattataaatggctttggcaatggttgtcttgcccgtaccccccattccccatatccctagaattaa 6500494  T
Q  212 aacatcttcggagttttggatgttgagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataattctgtccgatct 311  Q
     |||||||  | |||||  ||||| || ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| ||||    
T  6500495 gacatcttttgtgttttttatgtttagcagcttagtcgcagcttccacacgagattctaaacccactggatgttcagcaacaaataactctgtcctatct 6500594  T
Q  312 agcaaacgggtcacgtgtttaacaa 336  Q
    ||||||||||| ||| ||| |||||    
T  6500595 agcaaacgggtgacgcgttgaacaa 6500619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 32 - 336
Target Start/End: Complemental strand, 6794444 - 6794140
Alignment:
Q  32 tttgtaaacatcacagagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaagaaagctccgtccgtcgaat 131  Q
    |||||||||||||   ||||| ||||| || |||||||| ||||| | |||||| || |||| ||| || || |||||||| ||||||| ||| || |||    
T  6794444 tttgtaaacatcatgaagtatctgttgctgtagagaaacttgattagtatctgtgtcccaaacttccctaatgttcaaaaggaagctccttccctcaaat 6794345  T
Q  132 tttctcccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattcctaaaagtaaaacatcttcggagttttgga 231  Q
    || |||||||||||||||| ||| ||||| |||  ||||||||| |||| |||||||||||||||||| |||| || ||| |||||||| ||||||| ||    
T  6794344 ttgctcccaatttgattatgaatggctttagcaagggttgtttttcccataccccccattccccatatccctagaattaatacatcttctgagtttttga 6794245  T
Q  232 tgttgagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataattctgtccgatctagcaaacgggtcacgtgttt 331  Q
    |||| || ||||||||| || |||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| | | ||||||| ||| || ||||     
T  6794244 tgtttagcagcttagtcgcaacttccacacgagattctaaacccactggatgttcagcaacaaataactctgtcctaccaagcaaaccggtgacatgttc 6794145  T
Q  332 aacaa 336  Q
    |||||    
T  6794144 aacaa 6794140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 6725950 - 6725643
Alignment:
Q  12 cgtatcttgaatgccgttgttttgtaaacatcacagagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaa 111  Q
    |||||||||||||    |||||||||||||||||| ||||  | ||| || ||||||||  |||||| || |||||| |||||||| || ||||| | ||    
T  6725950 cgtatcttgaatgttaatgttttgtaaacatcacaaagtaccttttgctgtagagaaactagattggtatttgtctcccaaaattccctgatatttagaa 6725851  T
Q  112 gaaagctccgtccgtcgaattttctcccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattcctaaaagtaa 211  Q
     |||||||| ||| || ||||| || ||||||||||||||||| |||||||||  |||||||||||||  ||||||||| ||||| || |||| ||||||    
T  6725850 caaagctccttccctcaaatttgctaccaatttgattataaatggctttggcaagggttgttttacccgtaccccccataccccaaatccctagaagtaa 6725751  T
Q  212 aacatcttcggagttttggatgttgagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataattctgtccgatct 311  Q
    ||||||||| || ||||||||||| | |||||||||  |||||| |||||||  |||||| || ||||||||||||||||||||||| ||||||| |||     
T  6725750 aacatcttctgatttttggatgttcaatagcttagttgcagcttgcacacgatgttctactcctactggatgttcagcaacgaataactctgtcctatcc 6725651  T
Q  312 agcaaacg 319  Q
    ||||||||    
T  6725650 agcaaacg 6725643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 6713830 - 6713521
Alignment:
Q  13 gtatcttgaatgccgttgttttgtaaacatcacagagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaag 112  Q
    ||||||||| | | |||||||||||||||||||| ||||||||||| || |||||||| ||||| | ||||||||| |||| ||| || || || | |||    
T  6713830 gtatcttgagttctgttgttttgtaaacatcacaaagtatttgttgctgtagagaaacttgattagtatctgtctcccaaacttccctaatgtttagaag 6713731  T
Q  113 aaagctccgtccgtcgaattttctcccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattcctaaaagtaaa 212  Q
    |||||||| ||| || |||||  | ||||||||||||||||| |||||||||  ||||||||| ||||  |||||||||||||| || ||||||||||||    
T  6713730 aaagctccttccctcaaatttgataccaatttgattataaatggctttggcaagggttgttttgcccaagccccccattccccagatccctaaaagtaaa 6713631  T
Q  213 acatcttcggagttttggatgttgagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataattctgtccgatcta 312  Q
    ||||| |  || |||||||| || ||||  ||||||||| ||||||| ||||||   ||||| ||||||| |||| |||| ||||| ||||||  |||||    
T  6713630 acatcatttgaattttggatatttagtaaattagtcacatcttccactcgagatctgacaccgactggatattcaacaacaaataagtctgtcttatcta 6713531  T
Q  313 gcaaacgggt 322  Q
    ||||||||||    
T  6713530 gcaaacgggt 6713521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 6547850 - 6548148
Alignment:
Q  12 cgtatcttgaatgccgttgttttgtaaacatcacagagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaa 111  Q
    |||||||||||||  |||||||||||||||||||| |||| |||||| || || ||||| ||||| | | ||||||| |||||||| |||||||||| ||    
T  6547850 cgtatcttgaatgaagttgttttgtaaacatcacaaagtacttgttgctgtagtgaaacttgattagtacctgtctcccaaaattcccttatattcagaa 6547949  T
Q  112 gaaagctccgtccgtcgaattttctcccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattcctaaaagtaa 211  Q
    | ||||||  |||||| || || || ||||||| ||||||||| | ||||||  |||||||||| ||||         |||||||||| |||||||||||    
T  6547950 ggaagctctttccgtcaaacttgctaccaatttcattataaatggatttggctatggttgttttgccca---------ttccccatatccctaaaagtaa 6548040  T
Q  212 aacatcttcggagttttggatgttgagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataattctgtccgatct 311  Q
    ||||||||| || |||||||| || | |||||| ||  |||||| ||||||||||||||| |||||||||||||| ||||| ||||| | ||||| ||||    
T  6548041 aacatcttctgacttttggatctttaatagcttggttgcagcttgcacacgagattctactcccactggatgttcggcaacaaataactgtgtcctatct 6548140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 6834193 - 6833892
Alignment:
Q  13 gtatcttgaatgccgttgttttgtaaacatcacagagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaag 112  Q
    |||||||| |||  |||||||||||||||||||| ||||  ||||| ||||| |||||  |||| | || |||||| || ||||| | || |  ||||||    
T  6834193 gtatcttggatgttgttgttttgtaaacatcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaag 6834094  T
Q  113 aaagctccgtccgtcgaattttctcccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattcctaaaagtaaa 212  Q
     ||||||  ||| || ||||| |||||||||||||||||||| ||||||||| |||||||||||||   |||||||||||||||||| || | |||||||    
T  6834093 gaagctcattccctcaaatttgctcccaatttgattataaatggctttggcaatggttgttttacctgtaccccccattccccatatcccaagaagtaaa 6833994  T
Q  213 acatcttcggagttttggatgttgagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataattctgtccgatcta 312  Q
    ||||||   || ||||  ||||| | ||||||| ||||||  |||||||||||||||| ||||||||||||||||||||| ||||| | ||||| ||| |    
T  6833993 acatct---gatttttttatgtttaatagcttaatcacagtgtccacacgagattctaaacccactggatgttcagcaacaaataactttgtcctatcaa 6833897  T
Q  313 gcaaa 317  Q
    |||||    
T  6833896 gcaaa 6833892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 6756485 - 6756212
Alignment:
Q  12 cgtatcttgaatgccgttgttttgtaaacatcacagagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaa 111  Q
    ||||||||||||| |||||||| |||| |||| |||||||  |||||||| || ||||| ||||| | ||||||||| ||||| ||||||||||||| ||    
T  6756485 cgtatcttgaatgtcgttgtttcgtaagcatcgcagagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaa 6756386  T
Q  112 gaaagctccgtccgtcgaattttctcccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattcctaaaagtaa 211  Q
    | ||||||| ||| || |||||||| ||||||| ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||| || |  || |     
T  6756385 ggaagctccttccctcaaattttcttccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagcagaat 6756286  T
Q  212 aacatcttcggagttttggatgttgagtagcttagtcacagcttccacacgagattctacacccactggatgtt 285  Q
     | | | || || ||||||||||| |  ||  ||||  ||||||| || |||||||||||||||||||||||||    
T  6756285 tataacatctgatttttggatgtttaagagagtagttgcagcttctactcgagattctacacccactggatgtt 6756212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 322
Target Start/End: Complemental strand, 8412715 - 8412601
Alignment:
Q  208 gtaaaacatcttcggagttttggatgttgagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataattctgtccg 307  Q
    ||||||||||||| || ||||| ||||| ||||||| |||||||| ||  ||||||||||||||||| ||||||||||||||||| ||||| ||||| |     
T  8412715 gtaaaacatcttctgaattttgcatgtttagtagctcagtcacagattttacacgagattctacaccgactggatgttcagcaacaaataactctgtgct 8412616  T
Q  308 atctagcaaacgggt 322  Q
    |||||||||||||||    
T  8412615 atctagcaaacgggt 8412601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 8412866 - 8412731
Alignment:
Q  29 tgttttgtaaacatcacagagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaagaaagctccgtccgtcg 128  Q
    ||||||||||| |||||| ||||   |||| || ||||||||  |||| | || | |||| |||||||| |||||||| | ||  |||| |  ||| ||     
T  8412866 tgttttgtaaaaatcacaaagtaccagttgctgtagagaaactagattagtatttttctcccaaaattcccttatatttagaacgaagcactttccctca 8412767  T
Q  129 aattttctcccaatttgattataaatcgctttggca 164  Q
    |||||||| ||||||||||||||||| |||||||||    
T  8412766 aattttctaccaatttgattataaatggctttggca 8412731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 105 - 336
Target Start/End: Original strand, 11933 - 12164
Alignment:
Q  105 ttcaaaagaaagctccgtccgtcgaattttctcccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattccta 204  Q
    |||||||| ||||||| ||| || ||||| |||||||||||||||| ||| ||||| |||  ||||||||| |||| |||||||||||||||||| ||||    
T  11933 ttcaaaaggaagctccttccctcaaatttgctcccaatttgattatgaatggctttagcaagggttgtttttcccataccccccattccccatatcccta 12032  T
Q  205 aaagtaaaacatcttcggagttttggatgttgagtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataattctgt 304  Q
     || ||| |||||||| ||||||| |||||| || ||||||||| || |||||||||||||||||| ||||||||||||||||||||| ||||| |||||    
T  12033 gaattaatacatcttctgagtttttgatgtttagcagcttagtcgcaacttccacacgagattctaaacccactggatgttcagcaacaaataactctgt 12132  T
Q  305 ccgatctagcaaacgggtcacgtgtttaacaa 336  Q
    || | | ||||||| ||| || |||| |||||    
T  12133 cctaccaagcaaaccggtgacatgttcaacaa 12164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 3264525 - 3264571
Alignment:
Q  156 gctttggcagtggttgttttacccacaccccccattccccatattcc 202  Q
    |||||||| ||||||||||||||||  || |||||||||||||||||    
T  3264525 gctttggctgtggttgttttacccaacccacccattccccatattcc 3264571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 7166647 - 7166711
Alignment:
Q  140 aatttgattataaatcgctttggcagtggttgttttacccacaccccccattccccatattccta 204  Q
    |||||||||||| || |||||||| |||||||||||||||   |  |||||||||||||| ||||    
T  7166647 aatttgattatagatggctttggctgtggttgttttacccgacctgcccattccccatatcccta 7166711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 18928783 - 18928737
Alignment:
Q  258 acacgagattctacacccactggatgttcagcaacgaataattctgt 304  Q
    |||||||| ||||| ||||||||||| || |||||||||||||||||    
T  18928783 acacgagaatctacccccactggatggtctgcaacgaataattctgt 18928737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 5368376 - 5368318
Alignment:
Q  138 ccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattcccca 196  Q
    ||||||| ||| ||||| ||||||||| ||||||||||||| || |||||||| |||||    
T  5368376 ccaattttattgtaaatagctttggcaatggttgttttaccaactccccccatacccca 5368318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 5423669 - 5423611
Alignment:
Q  138 ccaatttgattataaatcgctttggcagtggttgttttacccacaccccccattcccca 196  Q
    ||||||| ||| ||||| ||||||||| ||||||||||||| || |||||||| |||||    
T  5423669 ccaattttattgtaaatagctttggcaatggttgttttaccaactccccccatacccca 5423611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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