View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1531-INSERTION-4 (Length: 627)
Name: NF1531-INSERTION-4
Description: NF1531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531-INSERTION-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 7 - 627
Target Start/End: Original strand, 35464642 - 35465261
Alignment:
| Q |
7 |
agctatggactcaaatactctaccgattgcctactatatatctatagtcaattgcaccataaaaccgactatagataatttgatttggcagctaaagtag |
106 |
Q |
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| T |
35464642 |
agctatggactcaaatactctaccgattgcctactatcaatctatagtcaattgcaccataaaaccgactatagataatttgatttggcagctaaagtag |
35464741 |
T |
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| Q |
107 |
taaattaaatatacattgatgatcgatcataaacataatgcaattcaatttagtctctaagatcatctaatcaacattaacaacaaaaactctcaataca |
206 |
Q |
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| T |
35464742 |
taaattaaatatacattgatgatcgatcataaacataatgcaattcaatttagtctctaagatcatctaatcaacattaacaacaaaaactctcaataca |
35464841 |
T |
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| Q |
207 |
taagtgaaattaactaagcttcataataataataataagattcaccttgttagtatacttagtatggtggtctaccatgactagcatgaccccaaggaga |
306 |
Q |
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| T |
35464842 |
taagtgaaattaactaagcttcataataatat--ataagattcaccttgttagtatacttagtatggtggtctaccatgactagcatgaccccaaggaga |
35464939 |
T |
|
| Q |
307 |
attattataagcttcatgattattcaacaattgttgttgtcctccatttgaaacacccaaattaccaccaacattgttatagcctggtggaattgaagaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35464940 |
attattataagcttcatgattattcaacaattgttgttgtcctccatttgaaacacccaaattaccaccaacattgttatagcctggtggaattgaagaa |
35465039 |
T |
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| Q |
407 |
ccttctccaacagatccaatcgctaactgtcccatccccgcggcacgcgtcggagactcatcatcaccaccaccaccctgatggccttcttgatcatcac |
506 |
Q |
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| T |
35465040 |
ccttctccaacagatccaatcgctaactgtcccatccccgctgcacgcgtcggagactcatcatcaccaccaccaccctgatgcccttcttgatcatcac |
35465139 |
T |
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| Q |
507 |
catcctcaaccggcagcctttcatacgtagcattcgaaaatgtcgccgccatcaacataactggtcctgctgccacaa-gggaccaacaactccaccgcc |
605 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
35465140 |
catcctcaaccggcagcctctcatacgtagcattcgaaaatgtcgccgccatcaacataactggtcctgccgccacaaggggaccaacaactccgccgcc |
35465239 |
T |
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| Q |
606 |
aaccacctgtccttgtcctcca |
627 |
Q |
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| T |
35465240 |
aaccacctgtccttgtcctcca |
35465261 |
T |
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