View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15310_low_1 (Length: 346)

Name: NF15310_low_1
Description: NF15310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15310_low_1
NF15310_low_1
[»] chr2 (21 HSPs)
chr2 (177-346)||(17230472-17230641)
chr2 (13-108)||(17230305-17230401)
chr2 (177-257)||(45537197-45537277)
chr2 (178-257)||(31993179-31993258)
chr2 (58-108)||(16415307-16415357)
chr2 (58-108)||(31715147-31715197)
chr2 (193-268)||(34950988-34951063)
chr2 (61-108)||(45537087-45537134)
chr2 (178-256)||(1116062-1116140)
chr2 (178-259)||(7940641-7940723)
chr2 (58-114)||(5462040-5462096)
chr2 (59-111)||(15912547-15912599)
chr2 (58-93)||(5935525-5935560)
chr2 (58-108)||(6404950-6405000)
chr2 (58-108)||(17136954-17137004)
chr2 (58-108)||(18965785-18965835)
chr2 (58-108)||(34950862-34950912)
chr2 (58-108)||(45117844-45117894)
chr2 (58-108)||(45235061-45235111)
chr2 (183-259)||(5461894-5461970)
chr2 (59-115)||(30490014-30490070)
[»] chr3 (28 HSPs)
chr3 (177-257)||(31764297-31764377)
chr3 (58-108)||(26981206-26981256)
chr3 (58-108)||(31764448-31764498)
chr3 (177-257)||(21972067-21972147)
chr3 (62-114)||(21972215-21972267)
chr3 (177-257)||(21994498-21994578)
chr3 (62-114)||(21994646-21994698)
chr3 (177-257)||(22154783-22154863)
chr3 (178-257)||(46469459-46469538)
chr3 (62-108)||(22154934-22154980)
chr3 (58-108)||(39353943-39353993)
chr3 (178-259)||(39587496-39587577)
chr3 (187-268)||(41192865-41192946)
chr3 (183-259)||(16479157-16479233)
chr3 (183-259)||(49324814-49324890)
chr3 (178-257)||(49165205-49165284)
chr3 (58-109)||(53816770-53816821)
chr3 (58-108)||(3939124-3939174)
chr3 (58-108)||(16479041-16479091)
chr3 (58-108)||(32530620-32530670)
chr3 (58-108)||(47013014-47013064)
chr3 (58-108)||(47372425-47372475)
chr3 (58-108)||(47647752-47647802)
chr3 (58-108)||(48065756-48065806)
chr3 (58-108)||(49324967-49325017)
chr3 (60-108)||(228215-228263)
chr3 (60-108)||(44205107-44205155)
chr3 (183-259)||(48065883-48065959)
[»] chr8 (24 HSPs)
chr8 (178-259)||(628340-628421)
chr8 (178-259)||(585502-585583)
chr8 (183-259)||(225632-225708)
chr8 (183-259)||(702045-702121)
chr8 (183-259)||(739255-739331)
chr8 (183-259)||(863150-863226)
chr8 (178-257)||(13545352-13545431)
chr8 (178-257)||(13679042-13679121)
chr8 (58-108)||(225504-225554)
chr8 (58-108)||(701917-701967)
chr8 (58-108)||(739127-739177)
chr8 (58-108)||(863022-863072)
chr8 (178-257)||(28249701-28249779)
chr8 (60-99)||(38224680-38224719)
chr8 (178-253)||(43097643-43097718)
chr8 (58-108)||(8239239-8239289)
chr8 (58-108)||(24835009-24835059)
chr8 (58-108)||(28249579-28249629)
chr8 (58-108)||(31700280-31700330)
chr8 (58-108)||(35683268-35683318)
chr8 (58-108)||(39317870-39317920)
chr8 (178-259)||(31700127-31700208)
chr8 (187-259)||(32338771-32338843)
chr8 (183-259)||(35683115-35683191)
[»] chr1 (26 HSPs)
chr1 (58-108)||(50891378-50891428)
chr1 (59-108)||(43253492-43253541)
chr1 (60-108)||(21737255-21737303)
chr1 (177-257)||(27217770-27217850)
chr1 (61-108)||(7562337-7562384)
chr1 (178-259)||(49852673-49852755)
chr1 (178-257)||(41087374-41087453)
chr1 (178-257)||(41092142-41092221)
chr1 (58-108)||(27217635-27217685)
chr1 (58-115)||(22859506-22859563)
chr1 (61-108)||(30516184-30516229)
chr1 (182-258)||(41899448-41899524)
chr1 (58-106)||(44754661-44754709)
chr1 (182-258)||(50891506-50891582)
chr1 (201-268)||(6603215-6603282)
chr1 (178-257)||(12529333-12529412)
chr1 (58-108)||(12523395-12523445)
chr1 (58-108)||(22333526-22333576)
chr1 (58-108)||(29962232-29962282)
chr1 (58-108)||(38861527-38861577)
chr1 (58-108)||(39600558-39600608)
chr1 (58-108)||(41087252-41087302)
chr1 (58-108)||(41092020-41092070)
chr1 (183-259)||(22333372-22333448)
chr1 (183-259)||(39600685-39600761)
chr1 (58-106)||(41899540-41899588)
[»] scaffold0209 (1 HSPs)
scaffold0209 (178-259)||(14263-14344)
[»] chr7 (17 HSPs)
chr7 (178-295)||(6900715-6900830)
chr7 (178-257)||(24686303-24686382)
chr7 (58-108)||(24686454-24686504)
chr7 (58-108)||(8166561-8166611)
chr7 (183-259)||(114251-114327)
chr7 (58-108)||(114122-114172)
chr7 (58-108)||(14815907-14815957)
chr7 (58-108)||(15262902-15262952)
chr7 (58-108)||(29329987-29330037)
chr7 (183-257)||(38247237-38247311)
chr7 (58-108)||(38247388-38247438)
chr7 (58-108)||(44866874-44866924)
chr7 (59-108)||(34847075-34847124)
chr7 (59-108)||(43744952-43745001)
chr7 (212-268)||(8166719-8166775)
chr7 (60-108)||(25528360-25528408)
chr7 (60-108)||(43458982-43459030)
[»] scaffold0121 (2 HSPs)
scaffold0121 (177-257)||(46384-46464)
scaffold0121 (58-108)||(46682-46732)
[»] chr4 (38 HSPs)
chr4 (178-268)||(4049093-4049184)
chr4 (178-257)||(38550368-38550447)
chr4 (178-258)||(5419785-5419865)
chr4 (178-258)||(18559500-18559580)
chr4 (183-259)||(44109531-44109607)
chr4 (178-257)||(16452899-16452978)
chr4 (58-108)||(38550525-38550575)
chr4 (183-268)||(35159682-35159767)
chr4 (183-259)||(1603746-1603822)
chr4 (178-258)||(49375260-49375340)
chr4 (183-259)||(51890122-51890198)
chr4 (183-259)||(55609635-55609711)
chr4 (58-108)||(1603618-1603668)
chr4 (58-108)||(4189139-4189189)
chr4 (58-108)||(4353425-4353475)
chr4 (58-108)||(5419663-5419713)
chr4 (58-108)||(9035351-9035401)
chr4 (58-108)||(13753107-13753157)
chr4 (58-108)||(28310137-28310187)
chr4 (58-108)||(28780038-28780088)
chr4 (58-108)||(30004392-30004442)
chr4 (58-108)||(35159555-35159605)
chr4 (58-108)||(38217536-38217586)
chr4 (58-108)||(47605232-47605282)
chr4 (58-108)||(47984183-47984233)
chr4 (58-108)||(49375151-49375201)
chr4 (58-108)||(51890004-51890054)
chr4 (58-108)||(52502243-52502293)
chr4 (58-108)||(53513126-53513176)
chr4 (58-108)||(55609777-55609827)
chr4 (58-108)||(56462921-56462971)
chr4 (58-115)||(167774-167831)
chr4 (58-115)||(45657169-45657226)
chr4 (183-259)||(13753234-13753310)
chr4 (183-259)||(38988197-38988273)
chr4 (183-259)||(47984030-47984106)
chr4 (183-259)||(55137600-55137676)
chr4 (183-259)||(56318742-56318818)
[»] chr5 (17 HSPs)
chr5 (58-108)||(31469882-31469932)
chr5 (182-268)||(25976226-25976312)
chr5 (178-259)||(26280016-26280097)
chr5 (178-257)||(27115261-27115340)
chr5 (58-108)||(20336744-20336794)
chr5 (58-108)||(27950907-27950956)
chr5 (58-108)||(1708958-1709008)
chr5 (178-256)||(2605692-2605770)
chr5 (58-108)||(3557458-3557508)
chr5 (58-108)||(8198217-8198267)
chr5 (58-108)||(8735530-8735580)
chr5 (58-108)||(16512842-16512892)
chr5 (58-108)||(38678715-38678765)
chr5 (58-111)||(27346856-27346908)
chr5 (60-108)||(17504465-17504513)
chr5 (178-258)||(20336592-20336672)
chr5 (60-108)||(27115141-27115189)
[»] scaffold0064 (1 HSPs)
scaffold0064 (58-108)||(61063-61112)
[»] chr6 (8 HSPs)
chr6 (58-115)||(11975807-11975864)
chr6 (58-108)||(304592-304642)
chr6 (58-108)||(31722155-31722205)
chr6 (58-108)||(34540683-34540733)
chr6 (58-108)||(34951247-34951297)
chr6 (59-108)||(31272092-31272141)
chr6 (60-108)||(481537-481585)
chr6 (183-259)||(34951358-34951434)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 177 - 346
Target Start/End: Original strand, 17230472 - 17230641
Alignment:
Q  177 caaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgctgttcggaaccaataac 276  Q
    ||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||     
T  17230472 caaagcttaaaattgaaaaagttcttggaaaagatcattccagattttaaaatccggataaatctggaaaatactaacaatgctgtttggaaccaataat 17230571  T
Q  277 ccggacaaggatattttcggnnnnnnnntagggcgcggtagaaatccatagggtagggaaagtaatacta 346  Q
    ||||||||||||||||||||        |||||||||||||||||||||||||| || ||||||||||||    
T  17230572 ccggacaaggatattttcggaaaaaaaatagggcgcggtagaaatccatagggtgggaaaagtaatacta 17230641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 17230305 - 17230401
Alignment:
Q  13 cacagacacatctaaaagctacctaaaaaactac-gggggtcgtatgcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17230305 cacatacacacctaaaagctacctaaaaaactacagggggtcgtatgcttaaaaagcttcaacattattataatgtattagtcatatatcaataaaa 17230401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 45537197 - 45537277
Alignment:
Q  177 caaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    ||||||||||||||| ||||||| ||||||| || |||||| || ||||||||||||||||||||| |||| | |||||||    
T  45537197 caaagcttaaaattgtaaaagttttggaaaaagaccattccggaatttaaaatccggataaatctggaaaacattaacaat 45537277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 31993258 - 31993179
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    |||||||||||||| ||||||||| |||||   ||||||| |||||||||||||||||| ||||| ||||| ||||||||    
T  31993258 aaagcttaaaattgtaaaagttcttgaaaaaactcattccggattttaaaatccggatacatctgcaaaattctaacaat 31993179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 16415307 - 16415357
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||||||||||||| ||||||||||||||||| | |||||||    
T  16415307 gcttaaaaagcttcaacattattgtaatgtattattcatattttaataaaa 16415357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 31715197 - 31715147
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    |||||||||| |||| ||||||| |||||||||||||||||||||||||||    
T  31715197 gcttaaaaagtttcatcattattgtaatgtattattcatatatcaataaaa 31715147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 34950988 - 34951063
Alignment:
Q  193 aaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgctgttcggaa 268  Q
    ||||||||||||||| || |||||| || |||||||||||||||| |||| ||| | ||| |||||| ||||||||    
T  34950988 aaaagttctggaaaaagaccattccggagtttaaaatccggataagtctggaaattcctatcaatgcagttcggaa 34951063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 45537087 - 45537134
Alignment:
Q  61 taaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  45537087 taaaaagcttcaacattattgtaatgaattattcaaatatcaataaaa 45537134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 1116062 - 1116140
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaa 256  Q
    |||||||||||| | |||||||||||||||  | |||||   ||||||||||||||||| ||||| ||||| |||||||    
T  1116062 aaagcttaaaatcgtaaaagttctggaaaaacaccattctgaattttaaaatccggatacatctgtaaaattctaacaa 1116140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 7940723 - 7940641
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaagga-tcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    |||||||||||||| ||||||| |||||||  | ||||||| |||||||||||||| ||| ||||  ||||| ||||||||||    
T  7940723 aaagcttaaaattgtaaaagttatggaaaaaaactcattccggattttaaaatccgaatacatctacaaaattctaacaatgc 7940641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 5462096 - 5462040
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaacgaatt 114  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| ||||||| |||||    
T  5462096 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaatgaatt 5462040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 15912547 - 15912599
Alignment:
Q  59 cttaaaaagcttcaacattattataatgtattattcatatatcaataaaacga 111  Q
    |||||||||||| || |||||| ||||||||| ||||||||| ||||||||||    
T  15912547 cttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaacga 15912599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 93
Target Start/End: Complemental strand, 5935560 - 5935525
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattatt 93  Q
    ||||||||||||||||||||||| ||||||||||||    
T  5935560 gcttaaaaagcttcaacattattgtaatgtattatt 5935525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 6404950 - 6405000
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  6404950 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 6405000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 17137004 - 17136954
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  17137004 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 17136954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 18965785 - 18965835
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    |||| ||| |||||||||||||| ||||||| ||||||||||| |||||||    
T  18965785 gcttcaaatgcttcaacattattgtaatgtaatattcatatattaataaaa 18965835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 34950862 - 34950912
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| ||||||||| ||||||||||||  | |||||||||||    
T  34950862 gcttaaaaagctttaacattattgtaatgtattatttttttatcaataaaa 34950912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 45117844 - 45117894
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  45117844 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 45117894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 45235061 - 45235111
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  45235061 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 45235111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 5461970 - 5461894
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| ||||||||||| |||  || ||||| |||||| ||||||| | | ||||| ||||| ||||||||||    
T  5461970 ttaaaattgcaaaagttctggtaaaacattattccggattttcaaatccgaaaacatctgcaaaattctaacaatgc 5461894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 30490070 - 30490014
Alignment:
Q  59 cttaaaaagcttcaacattattataatgtattattcatatatcaataaaacgaattg 115  Q
    |||||||||||| || |||||  ||||||||| ||||||||| ||||||| ||||||    
T  30490070 cttaaaaagcttgaaaattatagtaatgtattgttcatatattaataaaatgaattg 30490014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 31764377 - 31764297
Alignment:
Q  177 caaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    ||||||||||||||||||||||||| ||||| || |||||| |||||||||||| ||||||||||| ||||| ||||||||    
T  31764377 caaagcttaaaattgaaaaagttctagaaaaagaccattccggattttaaaatcgggataaatctgcaaaattctaacaat 31764297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 26981256 - 26981206
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  26981256 gcttaaaaaacttcaacattattgtaatgtattattcatatatcaataaaa 26981206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 31764498 - 31764448
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  31764498 gcttaaaaagcttcaacattattgtaatgtattgttcatatatcaataaaa 31764448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 21972147 - 21972067
Alignment:
Q  177 caaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    ||||| || |||||||||||| ||||||||| || |||| |||| |||| ||||||||||||||||||||| | |||||||    
T  21972147 caaagattgaaattgaaaaagctctggaaaaagaccatttcagaatttataatccggataaatctgaaaaacattaacaat 21972067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 21972267 - 21972215
Alignment:
Q  62 aaaaagcttcaacattattataatgtattattcatatatcaataaaacgaatt 114  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||| |||||    
T  21972267 aaaaagcttcaacattattgtaatgtattattcaaatatcaataaaatgaatt 21972215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 21994578 - 21994498
Alignment:
Q  177 caaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    ||||| || |||||||||||| ||||||||| || |||| |||| |||| ||||||||||||||||||||| | |||||||    
T  21994578 caaagattgaaattgaaaaagctctggaaaaagaccatttcagaatttataatccggataaatctgaaaaacattaacaat 21994498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 21994698 - 21994646
Alignment:
Q  62 aaaaagcttcaacattattataatgtattattcatatatcaataaaacgaatt 114  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||| |||||    
T  21994698 aaaaagcttcaacattattgtaatgtattattcaaatatcaataaaatgaatt 21994646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 22154863 - 22154783
Alignment:
Q  177 caaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    ||||| || |||||| ||||| |||||||||  | ||||||||| |||| ||||||||||||||||||||| | |||||||    
T  22154863 caaagtttgaaattggaaaagctctggaaaaaaaccattccagaatttataatccggataaatctgaaaaacattaacaat 22154783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 46469538 - 46469459
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    |||||||||||||| ||||||||||| |||  || |||||  ||||||||||||||| | ||||| ||||| ||||||||    
T  46469538 aaagcttaaaattgcaaaagttctggtaaaacattattccgaattttaaaatccggaaacatctgcaaaattctaacaat 46469459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 22154980 - 22154934
Alignment:
Q  62 aaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||||    
T  22154980 aaaaagtttcaacattattgtaatgtattattcaaatatcaataaaa 22154934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 39353943 - 39353993
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||||||||||||| |||||||    
T  39353943 gcttaaaaagcttgaaaattattgtaatgtattattcatatattaataaaa 39353993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 39587496 - 39587577
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    |||| ||||||||| ||||||||||| |||  || |||| ||||||| ||||||||| | ||||| ||||| ||||||||||    
T  39587496 aaagtttaaaattgtaaaagttctggtaaaacattattctagattttcaaatccggaaacatctgcaaaattctaacaatgc 39587577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 268
Target Start/End: Complemental strand, 41192946 - 41192865
Alignment:
Q  187 aattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgctgttcggaa 268  Q
    ||||| |||||||||||||||  || |||||| |||||||||| |||| | ||||| ||||| ||||||||||  |||||||    
T  41192946 aattgtaaaagttctggaaaaacattattccaaattttaaaattcggagacatctgcaaaattctaacaatgcaattcggaa 41192865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 16479157 - 16479233
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| ||||||||||| |||  || |||||||||||| ||||||||| | || || ||||| ||||||||||    
T  16479157 ttaaaattgcaaaagttctggtaaaacattattccagattttcaaatccggaaacatttgcaaaattctaacaatgc 16479233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 49324890 - 49324814
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| ||||||||||| |||  || ||||| |||||| ||||||||| | ||||| ||||| ||||||||||    
T  49324890 ttaaaattgcaaaagttctggtaaaacattattccggattttcaaatccggaaacatctgcaaaattctaacaatgc 49324814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 49165284 - 49165205
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    |||||||||||||| |||||||||||  ||  |  ||||| |||||||||||||||| | ||||| ||||| ||||||||    
T  49165284 aaagcttaaaattgcaaaagttctggttaaacactattccggattttaaaatccggaaacatctgcaaaattctaacaat 49165205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 53816770 - 53816821
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaac 109  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| ||||||||    
T  53816770 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaac 53816821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 3939174 - 3939124
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  3939174 gcttaaaaagcttaaaaattattgtaatgtattgttcatatattaataaaa 3939124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 16479041 - 16479091
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  16479041 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 16479091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 32530620 - 32530670
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  32530620 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 32530670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 47013064 - 47013014
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  47013064 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 47013014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 47372475 - 47372425
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  47372475 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 47372425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 47647752 - 47647802
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  47647752 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 47647802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 48065756 - 48065806
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  48065756 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 48065806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 49325017 - 49324967
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  49325017 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 49324967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 228215 - 228263
Alignment:
Q  60 ttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  228215 ttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 228263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 44205155 - 44205107
Alignment:
Q  60 ttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  44205155 ttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 44205107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 48065883 - 48065959
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| ||||||||||| |||  || ||||| |||||| ||||||| | | ||||| ||||| ||||||||||    
T  48065883 ttaaaattgtaaaagttctggtaaaatattattccggattttcaaatccgaaaacatctgcaaaattctaacaatgc 48065959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 628340 - 628421
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    |||||||||||||| |||||||||||||||  || ||||||||||||||||| |||||| ||||| ||||| ||||||||||    
T  628340 aaagcttaaaattgtaaaagttctggaaaaacattattccagattttaaaattcggatacatctgcaaaattctaacaatgc 628421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 585583 - 585502
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    |||||||||||||| |||||||||||||||  |  ||||||||||||||||| |||||| ||||| ||||| ||||||||||    
T  585583 aaagcttaaaattgtaaaagttctggaaaaacactattccagattttaaaattcggatacatctgcaaaattctaacaatgc 585502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 225632 - 225708
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| |||||||||||||||  | ||||||  ||||| ||||||| ||||||||| ||||| ||||||||||    
T  225632 ttaaaattgtaaaagttctggaaaaaaaccattccgaattttgaaatccgaataaatctgcaaaattctaacaatgc 225708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 702045 - 702121
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| |||||||||||||||  | ||||||  ||||| ||||||| ||||||||| ||||| ||||||||||    
T  702045 ttaaaattgtaaaagttctggaaaaaaaccattccgaattttgaaatccgaataaatctgcaaaattctaacaatgc 702121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 739255 - 739331
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| |||||||||||||||  | ||||||  ||||| ||||||| ||||||||| ||||| ||||||||||    
T  739255 ttaaaattgtaaaagttctggaaaaaaaccattccgaattttgaaatccgaataaatctgcaaaattctaacaatgc 739331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 863150 - 863226
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| |||||||||||||||  | ||||||  ||||| ||||||| ||||||||| ||||| ||||||||||    
T  863150 ttaaaattgtaaaagttctggaaaaaaaccattccgaattttgaaatccgaataaatctgcaaaattctaacaatgc 863226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 13545431 - 13545352
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    |||||||||||||| ||||||||||| |||  || |||||||||||| |||| |||| | ||||| ||||| ||||||||    
T  13545431 aaagcttaaaattgcaaaagttctggtaaaacattattccagattttcaaatacggaaacatctgcaaaattctaacaat 13545352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 13679042 - 13679121
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    |||||||||||||| ||||||||||| |||  || |||||||||||| |||| |||| | ||||| ||||| ||||||||    
T  13679042 aaagcttaaaattgcaaaagttctggtaaaacattattccagattttcaaatacggaaacatctgcaaaattctaacaat 13679121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 225504 - 225554
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||||||||||||| |||||||||  |||||||| |||||||    
T  225504 gcttaaaaagcttcaacattattgtaatgtattgctcatatattaataaaa 225554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 701917 - 701967
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||||||||||||| |||||||||  |||||||| |||||||    
T  701917 gcttaaaaagcttcaacattattgtaatgtattgctcatatattaataaaa 701967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 739127 - 739177
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||||||||||||| |||||||||  |||||||| |||||||    
T  739127 gcttaaaaagcttcaacattattgtaatgtattgctcatatattaataaaa 739177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 863022 - 863072
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||||||||||||| |||||||||  |||||||| |||||||    
T  863022 gcttaaaaagcttcaacattattgtaatgtattgctcatatattaataaaa 863072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 28249701 - 28249779
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    |||||||||||||| ||| |||||||||||  |  ||||| ||||||||||||| |||| ||||| ||||| ||||||||    
T  28249701 aaagcttaaaattgtaaa-gttctggaaaaacactattccggattttaaaatccagatacatctgcaaaattctaacaat 28249779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 38224719 - 38224680
Alignment:
Q  60 ttaaaaagcttcaacattattataatgtattattcatata 99  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  38224719 ttaaaaaacttcaacattattgtaatgtattattcatata 38224680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 43097718 - 43097643
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaa 253  Q
    |||||||||||||| ||||||||||| |||  || ||||  |||||||||||||||| | ||||| ||||| ||||    
T  43097718 aaagcttaaaattgcaaaagttctggtaaaacattattctggattttaaaatccggaaacatctgcaaaattctaa 43097643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 8239289 - 8239239
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  8239289 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 8239239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 24835009 - 24835059
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  24835009 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 24835059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 28249579 - 28249629
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  28249579 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 28249629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 31700330 - 31700280
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||| | || |||||||||||||||| ||||||||| |||||||    
T  31700330 gcttaaaaagcctgaaaattattataatgtattgttcatatattaataaaa 31700280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 35683318 - 35683268
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  35683318 gcttaaaaagctttaaaattattgtaatgtattgttcatatattaataaaa 35683268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 39317920 - 39317870
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  39317920 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 39317870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 31700208 - 31700127
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    |||||||||||||| ||||||||||| |||  || ||||| |||||| ||||  ||| | ||||| ||||| ||||||||||    
T  31700208 aaagcttaaaattgcaaaagttctggtaaaacattattccggattttcaaatatggaaacatctgcaaaattctaacaatgc 31700127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 32338771 - 32338843
Alignment:
Q  187 aattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||| |||||||||||||||  |  |||||  |||||||||||| |||| ||||| ||||| ||||||||||    
T  32338771 aattgtaaaagttctggaaaaatactattccgaattttaaaatccagatacatctgcaaaattctaacaatgc 32338843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 35683191 - 35683115
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||| ||| ||||||||||| |||  || ||||| |||||| ||||||||| | ||||| ||||| ||||||||||    
T  35683191 ttaaagttgcaaaagttctggtaaaatattattccggattttcaaatccggaaacatctgcaaaattctaacaatgc 35683115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 50891378 - 50891428
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50891378 gcttaaaaagcttcaacattattataatgtattattaatatatcaataaaa 50891428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 43253492 - 43253541
Alignment:
Q  59 cttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43253492 cttaaaaagcttcaacattattgtaatgtattattcatatatcaataaaa 43253541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 21737255 - 21737303
Alignment:
Q  60 ttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21737255 ttaaaaagcttcaacattattgtaatgtattattcatatatcaataaaa 21737303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 27217770 - 27217850
Alignment:
Q  177 caaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    ||||||||||||||||||||||| ||||||| || | ||||  ||||||| |||||||| |||||| ||||| ||||||||    
T  27217770 caaagcttaaaattgaaaaagttatggaaaaagacctttccgaattttaatatccggattaatctgcaaaattctaacaat 27217850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 7562384 - 7562337
Alignment:
Q  61 taaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||    
T  7562384 taaaaagcttcaacattattttaatgtattattcaaatatcaataaaa 7562337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 49852673 - 49852755
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatc-attccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    |||||||||||||| ||||||| |||||||  | | ||||| |||||||||||||||||| ||||| ||||| ||||||||||    
T  49852673 aaagcttaaaattgtaaaagttatggaaaaaaaaccattccggattttaaaatccggatacatctgcaaaattctaacaatgc 49852755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 41087374 - 41087453
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    |||||||||||||| ||||||||| | |||  || |||||||||||| ||||||||| | ||||| ||||| ||||||||    
T  41087374 aaagcttaaaattgcaaaagttctagtaaaacattattccagattttcaaatccggaaacatctgcaaaattctaacaat 41087453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 41092142 - 41092221
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    |||||||||||||| ||||||||| | |||  || |||||||||||| ||||||||| | ||||| ||||| ||||||||    
T  41092142 aaagcttaaaattgcaaaagttctagtaaaacattattccagattttcaaatccggaaacatctgcaaaattctaacaat 41092221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 27217635 - 27217685
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||| |||||||    
T  27217635 gcttaaaaagcttcaacgttattgtaatgtattgttcatatattaataaaa 27217685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 22859506 - 22859563
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaacgaattg 115  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| ||||||| ||||||    
T  22859506 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaatgaattg 22859563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 30516229 - 30516184
Alignment:
Q  61 taaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    |||||||||||||||||  ||||||||||||||||||||| |||||||    
T  30516229 taaaaagcttcaacatt--tataatgtattattcatatattaataaaa 30516184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 41899524 - 41899448
Alignment:
Q  182 cttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatg 258  Q
    |||||||||| ||||||||||| |||  || ||||| |||||| ||||||||| | ||| ||||||| |||||||||    
T  41899524 cttaaaattgcaaaagttctggtaaaacattattccggattttcaaatccggaaacatcggaaaaattctaacaatg 41899448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 44754709 - 44754661
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataa 106  Q
    ||||||||||||| || |||||| ||||||||||||||||||| |||||    
T  44754709 gcttaaaaagcttgaaaattattgtaatgtattattcatatattaataa 44754661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 50891506 - 50891582
Alignment:
Q  182 cttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatg 258  Q
    ||||||||  ||||| |||| ||||| ||||||||| |||||||||||||| ||   ||||||||||| ||||||||    
T  50891506 cttaaaatgaaaaaaattctagaaaaagatcattccggattttaaaatccgaattcgtctgaaaaatattaacaatg 50891582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 6603282 - 6603215
Alignment:
Q  201 tggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgctgttcggaa 268  Q
    ||||||| |||| |||| |||||||||||||  | |||||||||||| | ||||||||| ||||||||    
T  6603282 tggaaaatgatcgttccggattttaaaatccaaacaaatctgaaaaacattaacaatgcagttcggaa 6603215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 12529333 - 12529412
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    |||||||||||||| ||||||||||| |||  || ||||| |||||||||||||  | | ||||| ||||| ||||||||    
T  12529333 aaagcttaaaattgcaaaagttctggtaaaatattattccggattttaaaatccaaaaacatctgtaaaattctaacaat 12529412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 12523445 - 12523395
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| |||||||||||| |||||| |||||||    
T  12523445 gcttaaaaagcttgaaaattattgtaatgtattatttatatattaataaaa 12523395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 22333576 - 22333526
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  22333576 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 22333526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 29962232 - 29962282
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  29962232 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 29962282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 38861527 - 38861577
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  38861527 gcttaaaaagcttgaaaattattgtaatgtatttttcatatattaataaaa 38861577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 39600558 - 39600608
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  39600558 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 39600608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 41087252 - 41087302
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  41087252 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 41087302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 41092020 - 41092070
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  41092020 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 41092070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 22333448 - 22333372
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| ||||| ||||| |||  || |||||||||||| ||||||| | | ||||| ||||| ||||||||||    
T  22333448 ttaaaattgtaaaagctctggtaaaacattattccagattttcaaatccgaagacatctgcaaaattctaacaatgc 22333372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 39600685 - 39600761
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| ||||||||||| |||  || ||||| |||||| ||||||| | | ||||| ||||| ||||||||||    
T  39600685 ttaaaattgcaaaagttctggtaaaatattattccggatttttaaatccgaaaacatctgcaaaattctaacaatgc 39600761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 41899588 - 41899540
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataa 106  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||    
T  41899588 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataa 41899540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 14344 - 14263
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    |||||||||||||| |||||||||||||||  |  ||||||||||||||||| |||||| ||||| ||||| ||||||||||    
T  14344 aaagcttaaaattgtaaaagttctggaaaaacactattccagattttaaaattcggatacatctgcaaaattctaacaatgc 14263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 6900715 - 6900830
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgctgttcggaaccaataacc 277  Q
    |||||||||||| |||||| |||||||||| || ||||   |||| |||||| |||||||||||| ||||||||||||||| |||| ||||| ||||| |    
T  6900715 aaagcttaaaat-gaaaaa-ttctggaaaaagaacattttggattataaaatgcggataaatctggaaaatactaacaatgttgtttggaacaaataatc 6900812  T
Q  278 cggacaaggatattttcg 295  Q
    || |||||| ||||||||    
T  6900813 cgaacaagggtattttcg 6900830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 24686382 - 24686303
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    |||||||||||||| ||||||| ||||||| || ||||||||| ||||||||||||||||||| | |||| | |||||||    
T  24686382 aaagcttaaaattgtaaaagttatggaaaaagaccattccagaatttaaaatccggataaatccggaaaacattaacaat 24686303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 24686504 - 24686454
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  24686504 gcttaaaaagcttcaacattattgtaatgtattattcaaatatcaataaaa 24686454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 8166561 - 8166611
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||| |||||||    
T  8166561 gcttaaaaaacttcaacattattgtaatgtattgttcatatattaataaaa 8166611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 114251 - 114327
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||| | ||||||||||| |||  || |||||||||||| ||||||||| | ||||| ||||| ||||||||||    
T  114251 ttaaaatcgcaaaagttctggtaaaacattattccagattttcaaatccggaaacatctgcaaaattctaacaatgc 114327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 114122 - 114172
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  114122 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 114172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 14815957 - 14815907
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  14815957 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 14815907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 15262952 - 15262902
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  15262952 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 15262902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 29330037 - 29329987
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  29330037 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 29329987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 38247311 - 38247237
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    ||||||||| |||| |||||| |||  || |||||||||||| ||||||||| | ||||| ||||| ||||||||    
T  38247311 ttaaaattgcaaaacttctggtaaaatattattccagattttcaaatccggaaacatctgcaaaattctaacaat 38247237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 38247438 - 38247388
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  38247438 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 38247388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 44866874 - 44866924
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  44866874 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 44866924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 34847124 - 34847075
Alignment:
Q  59 cttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    |||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  34847124 cttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 34847075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 43745001 - 43744952
Alignment:
Q  59 cttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    |||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  43745001 cttaaaaagcttaaaaattattgtaatgtattgttcatatattaataaaa 43744952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 8166719 - 8166775
Alignment:
Q  212 cattccagattttaaaatccggataaatctgaaaaatactaacaatgctgttcggaa 268  Q
    |||||| ||||||||||||| | |||||||| ||||| ||||||||||  |||||||    
T  8166719 cattccggattttaaaatccaggtaaatctgcaaaattctaacaatgcaattcggaa 8166775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 25528408 - 25528360
Alignment:
Q  60 ttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    |||||||| || || |||||| ||||||||||||||||||| |||||||    
T  25528408 ttaaaaagtttgaaaattattgtaatgtattattcatatattaataaaa 25528360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 43458982 - 43459030
Alignment:
Q  60 ttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  43458982 ttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 43459030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 46464 - 46384
Alignment:
Q  177 caaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    ||||||||||||||||||||||||||||||| |  | ||||| ||||||| |||||||| |||||| ||||| ||||||||    
T  46464 caaagcttaaaattgaaaaagttctggaaaaagccctttccaaattttaatatccggattaatctgcaaaattctaacaat 46384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 46732 - 46682
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  46732 gcttaaaaagcttcaacattattgtaatgtattgttcatatattaataaaa 46682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 4049093 - 4049184
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatc-attccagattttaaaatccggataaatctgaaaaatactaacaatgctgttcggaa 268  Q
    |||||||||||||| ||||||| |||||||  | | |||||||||||||||||||||||| ||||| ||||| ||||||||||  |||||||    
T  4049093 aaagcttaaaattgtaaaagttatggaaaaaaaaccattccagattttaaaatccggatacatctgcaaaattctaacaatgcaattcggaa 4049184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 38550447 - 38550368
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    |||||||||||||| |||||||||||||||  |  ||| | |||||||||||||||||| ||||| ||||| ||||||||    
T  38550447 aaagcttaaaattgtaaaagttctggaaaaacactatttcggattttaaaatccggatacatctgcaaaattctaacaat 38550368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 5419785 - 5419865
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatg 258  Q
    |||||||||||||| ||||||||||| |||  || ||||| |||||| ||||||||| | ||||| ||||| |||||||||    
T  5419785 aaagcttaaaattgcaaaagttctggtaaaacattattccggattttcaaatccggaaacatctgcaaaattctaacaatg 5419865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 18559580 - 18559500
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatg 258  Q
    |||||||||||||| ||||||||||| |||  || ||| | |||||||||||||||| | ||||| ||||| |||||||||    
T  18559580 aaagcttaaaattgcaaaagttctggtaaaatattatttcggattttaaaatccggaaacatctgtaaaattctaacaatg 18559500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 44109531 - 44109607
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| |||| |||||| |||  || |||||||||||||||||||||| | ||||| ||||| ||||||||||    
T  44109531 ttaaaattgtaaaacttctggtaaaacattattccagattttaaaatccggaaacatctgcaaaattctaacaatgc 44109607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 16452899 - 16452978
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    |||| ||||||||| |||||||||||||||  |  ||||  |||||||||||||||||| ||||| ||||| ||||||||    
T  16452899 aaagtttaaaattgtaaaagttctggaaaaacactattctggattttaaaatccggatacatctgcaaaattctaacaat 16452978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 38550575 - 38550525
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||||||||||||| ||||||||| |||||||    
T  38550575 gcttaaaaagcttgaaaattattataatgtattgttcatatattaataaaa 38550525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 35159682 - 35159767
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgctgttcggaa 268  Q
    ||||||||| ||||||||||| |||  || ||||| |||||| ||||||||| | ||||| ||||| ||||||||||  |||||||    
T  35159682 ttaaaattgcaaaagttctggtaaaacattattccggattttcaaatccggaaacatctgcaaaattctaacaatgcaattcggaa 35159767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 1603746 - 1603822
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| ||||||||||| |||  || |||||||||||| ||||| ||| | ||||| ||||| ||||||||||    
T  1603746 ttaaaattgcaaaagttctggtaaaacattattccagattttcaaatctggaaacatctgcaaaattctaacaatgc 1603822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 49375260 - 49375340
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatg 258  Q
    |||||||||||||| ||||||||||| |||  || ||||| |||||| |||||| || | ||||| ||||| |||||||||    
T  49375260 aaagcttaaaattgcaaaagttctggtaaaacattattccggattttcaaatccagaaacatctgcaaaattctaacaatg 49375340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 51890122 - 51890198
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| ||||||||||| |||  || ||||| |||||| ||||||||| | ||||| ||||| ||||||||||    
T  51890122 ttaaaattgcaaaagttctggtaaaacattattccggattttcaaatccggaaacatctgcaaaattctaacaatgc 51890198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 55609711 - 55609635
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| ||||||||||| |||  || |||||||||||| ||||||||| | || || ||||| ||||||||||    
T  55609711 ttaaaattgcaaaagttctggtaaaacattattccagattttcaaatccggaaacatttgcaaaattctaacaatgc 55609635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 1603618 - 1603668
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  1603618 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 1603668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 4189189 - 4189139
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  4189189 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 4189139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 4353425 - 4353475
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  4353425 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 4353475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 5419663 - 5419713
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  5419663 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 5419713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 9035401 - 9035351
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  9035401 gcttaaaaagcttgaaaattattgtaatgtatttttcatatattaataaaa 9035351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 13753107 - 13753157
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  13753107 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 13753157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 28310187 - 28310137
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  28310187 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 28310137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 28780088 - 28780038
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  28780088 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 28780038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 30004392 - 30004442
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  30004392 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 30004442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 35159555 - 35159605
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  35159555 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 35159605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 38217586 - 38217536
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  38217586 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 38217536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 47605232 - 47605282
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  47605232 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 47605282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 47984233 - 47984183
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  47984233 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 47984183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 49375151 - 49375201
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  49375151 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 49375201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 51890004 - 51890054
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  51890004 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 51890054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 52502243 - 52502293
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  52502243 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 52502293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 53513126 - 53513176
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  53513126 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 53513176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 55609827 - 55609777
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  55609827 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 55609777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 56462971 - 56462921
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  56462971 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 56462921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 167831 - 167774
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaacgaattg 115  Q
    ||||||||||||| || |||||| || |||||| ||||||||| ||||||| ||||||    
T  167831 gcttaaaaagcttgaaaattattgtactgtattgttcatatattaataaaatgaattg 167774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 45657226 - 45657169
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaacgaattg 115  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| ||||| | ||||||    
T  45657226 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataatatgaattg 45657169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 13753234 - 13753310
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| ||||||||||| |||  || || || |||||| ||||||||| | ||||| ||||| ||||||||||    
T  13753234 ttaaaattgcaaaagttctggtaaaccattatcccggattttcaaatccggaaacatctgtaaaattctaacaatgc 13753310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 38988273 - 38988197
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| ||||||||||| |||  || ||||| ||||| ||||||| || | ||||| ||||| ||||||||||    
T  38988273 ttaaaattgcaaaagttctggtaaaacattattccggatttgaaaatccagaaacatctgcaaaattctaacaatgc 38988197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 47984106 - 47984030
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||  ||||||||||| |||  || ||||| |||||| ||||||||| | ||||| ||||| ||||||||||    
T  47984106 ttaaaattacaaaagttctggtaaaacattattccggattttcaaatccggaaacatctgcaaaattctaacaatgc 47984030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 55137600 - 55137676
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| ||||||||||| |||  || ||||| |||||| ||||||| | | ||||| ||||| ||||||||||    
T  55137600 ttaaaattgcaaaagttctggtaaaacattattccggattttcaaatccgaaaacatctgcaaaattctaacaatgc 55137676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 56318742 - 56318818
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| ||||||||||| |||  || |||||  ||||| ||||||||| | ||||| ||||| ||||||||||    
T  56318742 ttaaaattgcaaaagttctggtaaaacattattccgaattttcaaatccggaaacatctgcaaaattctaacaatgc 56318818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 31469932 - 31469882
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  31469932 gcttaaaaagcttcaacattattgtaatgtattattcaaatatcaataaaa 31469882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 25976312 - 25976226
Alignment:
Q  182 cttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgctgttcggaa 268  Q
    |||||||||| |||||||||||||||  |  ||||| ||||||||||||| |||| ||||| ||||| |||||||||| || |||||    
T  25976312 cttaaaattgtaaaagttctggaaaaacactattccggattttaaaatccagatacatctgcaaaattctaacaatgcagtccggaa 25976226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 26280016 - 26280097
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    |||||||||||||| |||||||||||||||  | |||||| |||||| |||||| |||| ||||  ||||| ||||||||||    
T  26280016 aaagcttaaaattgtaaaagttctggaaaaaaaccattccggattttcaaatccagatacatctacaaaattctaacaatgc 26280097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 27115261 - 27115340
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaat 257  Q
    |||||||||||||| |||||||||| ||||  |  ||||| |||||||||||||||||| ||||| |||||  |||||||    
T  27115261 aaagcttaaaattgtaaaagttctgcaaaaacactattccggattttaaaatccggatacatctgtaaaattataacaat 27115340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 20336794 - 20336744
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||||||||||||| |||||||    
T  20336794 gcttaaaaagcttgaaaattattgtaatgtattattcatatattaataaaa 20336744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 27950907 - 27950956
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||||||||||||| |||| |||||||||||||| |||||||    
T  27950907 gcttaaaaagcttcaacattattgtaat-tattattcatatattaataaaa 27950956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 1709008 - 1708958
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  1709008 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 1708958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 2605770 - 2605692
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaa 256  Q
    |||||||||||||| ||||||||||| |||  || ||||| |||||| ||||||||| | ||| | ||||| |||||||    
T  2605770 aaagcttaaaattgcaaaagttctggtaaaacattattccggattttcaaatccggaaacatccgcaaaattctaacaa 2605692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 3557458 - 3557508
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||||||||||||| ||||||||  |||||||    
T  3557458 gcttaaaaagcttgaaaattattataatgtattgttcatataataataaaa 3557508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 8198217 - 8198267
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  8198217 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 8198267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 8735530 - 8735580
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  8735530 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 8735580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 16512892 - 16512842
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  16512892 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 16512842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 38678765 - 38678715
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| |||| |||||||||||||| |||||||    
T  38678765 gcttaaaaagcttgaaaattattgtaatctattattcatatattaataaaa 38678715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 27346908 - 27346856
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaacga 111  Q
    ||||||||||||||| |||||||  ||| |||||||||||||| ||||||||||    
T  27346908 gcttaaaaagcttcaccattattgaaat-tattattcatatattaataaaacga 27346856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 17504465 - 17504513
Alignment:
Q  60 ttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  17504465 ttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 17504513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 20336672 - 20336592
Alignment:
Q  178 aaagcttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatg 258  Q
    |||||||||||||| ||||||||||| |||  || ||||| |||||| ||||||| |   ||||| ||||| |||||||||    
T  20336672 aaagcttaaaattgcaaaagttctggtaaaacattattccggattttcaaatccgaaagcatctgcaaaattctaacaatg 20336592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 27115141 - 27115189
Alignment:
Q  60 ttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  27115141 ttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 27115189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 61112 - 61063
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||||||||||||| |||| |||||||||||||| |||||||    
T  61112 gcttaaaaagcttcaacattattgtaat-tattattcatatattaataaaa 61063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 11975807 - 11975864
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaacgaattg 115  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| ||||||| ||||||    
T  11975807 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaatgaattg 11975864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 304592 - 304642
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  304592 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 304642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 31722205 - 31722155
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  31722205 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 31722155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 34540733 - 34540683
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  34540733 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 34540683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 34951247 - 34951297
Alignment:
Q  58 gcttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  34951247 gcttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 34951297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 31272092 - 31272141
Alignment:
Q  59 cttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    |||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  31272092 cttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 31272141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 481537 - 481585
Alignment:
Q  60 ttaaaaagcttcaacattattataatgtattattcatatatcaataaaa 108  Q
    ||||||||||| || |||||| ||||||||| ||||||||| |||||||    
T  481537 ttaaaaagcttgaaaattattgtaatgtattgttcatatattaataaaa 481585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 34951358 - 34951434
Alignment:
Q  183 ttaaaattgaaaaagttctggaaaaggatcattccagattttaaaatccggataaatctgaaaaatactaacaatgc 259  Q
    ||||||||| ||||||||||| |||  || |||||||||||| ||| || || | ||||| ||||| ||||||||||    
T  34951358 ttaaaattgcaaaagttctggtaaaacattattccagattttcaaacccagaaacatctgcaaaattctaacaatgc 34951434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University