View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15310_low_2 (Length: 343)

Name: NF15310_low_2
Description: NF15310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15310_low_2
NF15310_low_2
[»] chr8 (11 HSPs)
chr8 (12-343)||(13877764-13878098)
chr8 (12-343)||(20825829-20826160)
chr8 (31-309)||(20492341-20492619)
chr8 (25-343)||(41663661-41663979)
chr8 (29-308)||(7925950-7926229)
chr8 (31-309)||(8301366-8301644)
chr8 (247-326)||(29720426-29720505)
chr8 (16-113)||(16374387-16374484)
chr8 (229-341)||(17660372-17660484)
chr8 (229-309)||(45254337-45254417)
chr8 (256-305)||(29483040-29483089)
[»] chr2 (5 HSPs)
chr2 (12-343)||(33514472-33514803)
chr2 (246-308)||(3152333-3152395)
chr2 (247-317)||(7458133-7458203)
chr2 (262-311)||(22724030-22724079)
chr2 (265-309)||(22871135-22871179)
[»] scaffold1350 (1 HSPs)
scaffold1350 (13-323)||(1095-1405)
[»] chr5 (16 HSPs)
chr5 (13-342)||(33384487-33384816)
chr5 (12-343)||(25855719-25856050)
chr5 (91-329)||(27164454-27164692)
chr5 (31-308)||(23239945-23240222)
chr5 (43-308)||(42515284-42515549)
chr5 (52-343)||(33171187-33171478)
chr5 (229-341)||(6999500-6999612)
chr5 (178-308)||(30730760-30730890)
chr5 (229-309)||(6050803-6050883)
chr5 (262-309)||(21823141-21823188)
chr5 (52-182)||(12833591-12833721)
chr5 (29-141)||(30728639-30728751)
chr5 (265-299)||(1822422-1822456)
chr5 (265-311)||(10485487-10485533)
chr5 (52-182)||(12865569-12865699)
chr5 (247-315)||(25591852-25591920)
[»] chr6 (18 HSPs)
chr6 (12-343)||(17604614-17604945)
chr6 (208-343)||(17576193-17576328)
chr6 (46-329)||(15955299-15955580)
chr6 (70-343)||(18680914-18681187)
chr6 (52-343)||(13939246-13939537)
chr6 (264-343)||(2555133-2555212)
chr6 (16-122)||(26207082-26207188)
chr6 (229-308)||(1307164-1307243)
chr6 (262-309)||(16479722-16479769)
chr6 (262-309)||(18487630-18487677)
chr6 (16-113)||(15675591-15675688)
chr6 (46-119)||(19155424-19155497)
chr6 (229-341)||(11059359-11059471)
chr6 (265-309)||(26511778-26511822)
chr6 (265-309)||(26516894-26516938)
chr6 (247-314)||(17712111-17712178)
chr6 (246-309)||(25351786-25351849)
chr6 (262-314)||(21550404-21550456)
[»] chr3 (13 HSPs)
chr3 (12-343)||(12333368-12333699)
chr3 (46-317)||(16185866-16186137)
chr3 (52-343)||(961483-961774)
chr3 (29-308)||(2365842-2366121)
chr3 (29-308)||(19918529-19918808)
chr3 (151-323)||(17076721-17076893)
chr3 (265-341)||(30165856-30165932)
chr3 (91-126)||(37443448-37443483)
chr3 (47-97)||(17076639-17076689)
chr3 (247-308)||(14606928-14606989)
chr3 (266-343)||(21739028-21739105)
chr3 (259-311)||(31676492-31676544)
chr3 (259-311)||(31919879-31919931)
[»] chr7 (8 HSPs)
chr7 (28-343)||(17722164-17722479)
chr7 (31-308)||(29969538-29969815)
chr7 (29-308)||(4936425-4936704)
chr7 (229-311)||(33795573-33795655)
chr7 (229-308)||(4166293-4166372)
chr7 (229-308)||(34207894-34207973)
chr7 (16-113)||(13441817-13441914)
chr7 (246-343)||(45460841-45460938)
[»] chr1 (7 HSPs)
chr1 (12-323)||(47621355-47621666)
chr1 (29-308)||(6052167-6052446)
chr1 (169-309)||(35542597-35542737)
chr1 (46-122)||(25527995-25528071)
chr1 (16-122)||(5498764-5498870)
chr1 (16-113)||(32351596-32351693)
chr1 (262-343)||(39431815-39431896)
[»] chr4 (23 HSPs)
chr4 (25-308)||(1826834-1827117)
chr4 (13-315)||(11585467-11585769)
chr4 (29-308)||(47420368-47420647)
chr4 (46-300)||(5789251-5789505)
chr4 (52-343)||(19732308-19732599)
chr4 (12-308)||(17437810-17438107)
chr4 (262-316)||(54685962-54686016)
chr4 (246-311)||(19308101-19308166)
chr4 (32-89)||(54686189-54686246)
chr4 (259-315)||(8936632-8936688)
chr4 (58-110)||(14551819-14551871)
chr4 (229-341)||(20397096-20397208)
chr4 (265-308)||(14551621-14551664)
chr4 (262-305)||(21139974-21140017)
chr4 (265-308)||(23280367-23280410)
chr4 (259-294)||(43497229-43497264)
chr4 (269-311)||(7661845-7661887)
chr4 (16-122)||(8486503-8486609)
chr4 (262-308)||(23641121-23641167)
chr4 (262-308)||(23646779-23646825)
chr4 (229-307)||(34977497-34977575)
chr4 (262-311)||(3128525-3128574)
chr4 (262-314)||(26695486-26695538)
[»] scaffold0034 (1 HSPs)
scaffold0034 (29-308)||(104140-104419)
[»] scaffold0131 (1 HSPs)
scaffold0131 (265-341)||(3091-3167)
[»] scaffold0112 (1 HSPs)
scaffold0112 (268-315)||(14202-14249)
[»] scaffold0074 (1 HSPs)
scaffold0074 (265-309)||(39939-39983)


Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 13877764 - 13878098
Alignment:
Q  12 tgagatgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaa 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13877764 tgagatgaaggatgatattgtgagttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaa 13877863  T
Q  112 gttgagagtccgcaatccttgaatgagttcagactgatatcgttggtgggg---agtctttataaaatattggcaaaaattctggcaaataggctgagac 208  Q
    ||||||||||| |||||||||||||||||| |||  |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  13877864 gttgagagtccacaatccttgaatgagttccgacctatatcgttggtgggggggagtctttataaaatattggcaaaaattctggcaaataggctgagac 13877963  T
Q  209 aggtcattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13877964 aggtcattgggagcgtggtgtcggatgctcaatatgcgtttgtaaaagacatgcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 13878063  T
Q  309 tcgtaaatccaagaaggatctgttattgtttaaag 343  Q
    ||||||||||||||||||| |||| ||||||||||    
T  13878064 tcgtaaatccaagaaggatatgttgttgtttaaag 13878098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 20826160 - 20825829
Alignment:
Q  12 tgagatgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaa 111  Q
    ||||||||| || ||| ||||| | ||| | ||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||    
T  20826160 tgagatgaaagaggatgttgtgagatttgttactgagtttcataggaatgggaggttgtcgaaaggtataaatgctacgttcattgcccttatacctaaa 20826061  T
Q  112 gttgagagtccgcaatccttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacagg 211  Q
    || ||| | || |||||| ||||||| || |||| ||| |||||||||||||||||||||||||| ||||||||  || | || |||||| ||   ||||    
T  20826060 gtagagtgccctcaatccctgaatgattttagaccgatttcgttggtggggagtctttataaaattttggcaaagcttttagctaataggttgcttcagg 20825961  T
Q  212 tcattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcg 311  Q
    | |||||||| || |||||||| | ||| || | |||||| ||| | ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  20825960 ttattgggagtgttgtgtcggacgttcagtccgcgtttgttaaaaataggcatattcttgatggcattctgatagctaatgaggtggttgatgaggctcg 20825861  T
Q  312 taaatccaagaaggatctgttattgtttaaag 343  Q
    ||| || ||||| |||||||| ||||||||||    
T  20825860 taagtctaagaaagatctgttgttgtttaaag 20825829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 31 - 309
Target Start/End: Complemental strand, 20492619 - 20492341
Alignment:
Q  31 gtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatcct 130  Q
    ||||| ||| |||| ||||| ||||||||||| |  ||  ||||||| || ||||||||||||||||| || |||||||||||||  ||||| |||||      
T  20492619 gtgcgatttgtaaccgaatttcataggaatggaaaattagcgaaaggcataaattctacgttcattgccctaattcctaaagttgcaagtccacaatctc 20492520  T
Q  131 tgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtc 230  Q
    ||||||||||  | |  || || || ||||||||  | ||||||||  |||| ||||||||||| || ||| |||| ||||| |||||||| || |||||    
T  20492519 tgaatgagtttcggcctatctctttagtggggagcatgtataaaattctggcgaaaattctggccaacaggttgaggcaggttattgggagtgtagtgtc 20492420  T
Q  231 ggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggct 309  Q
     || ||||| ||||  ||||| ||| |||| |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  20492419 cgaggctcagtctgcttttgttaaaaacagacaaattcttgatggaattctgatcgctaatgaggtggtagatgaggct 20492341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 343
Target Start/End: Original strand, 41663661 - 41663979
Alignment:
Q  25 gatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgc 124  Q
    ||||||||||| ||| | |||||||||||||||||| | |  || ||||||||  | ||  ||||||||||  |  | ||||||||||||   ||||| |    
T  41663661 gatattgtgcgctttgttactgaattccataggaatagaaaattatcgaaaggcgtaaacgctacgttcataaccttaattcctaaagttacaagtcctc 41663760  T
Q  125 aatccttgaatgagtt-cagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcg 223  Q
    |||| ||||||||||| ||| || || || |||||||||||  | |||||||| ||| | |||||||| ||||||||| |||| ||||| |||||||| |    
T  41663761 aatctttgaatgagtttcagcct-atttccttggtggggagcatgtataaaattttgacgaaaattctagcaaataggttgaggcaggttattgggagtg 41663859  T
Q  224 tggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaa 323  Q
    | ||||| || ||||| ||||  ||||| ||| |||| |||||||||||||||||| ||||||||||||||||||| ||||||||  | ||||| |||||    
T  41663860 ttgtgtcagaagctcagtctgcttttgttaaaaacagacaaattcttgatggtattttgatcgctaatgaggtggtcgatgaggcaaggaaatctaagaa 41663959  T
Q  324 ggatctgttattgtttaaag 343  Q
     ||||| || ||||| ||||    
T  41663960 agatcttttgttgttcaaag 41663979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 29 - 308
Target Start/End: Complemental strand, 7926229 - 7925950
Alignment:
Q  29 ttgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatc 128  Q
    ||||||| ||| | ||||||||||||||||||||||  ||| ||||||| || |||||||| ||||| || ||||||||||||||||  || || |||||    
T  7926229 ttgtgcgctttgtgactgaattccataggaatgggaaattgacgaaaggcataaattctacattcatcgcccttattcctaaagttgctagccctcaatc 7926130  T
Q  129 cttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtg 228  Q
     |||||||||||  | |  || || |||||||||||  | || ||||| ||||| |||||||| ||||| ||| |||| ||||| |||||||| || |||    
T  7926129 gttgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctagcaaacaggttgaggcaggttattgggagtgttgtg 7926030  T
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    || ||  |||| ||||  ||||| || || || |||||| ||||||||||  |||| || ||||||||||||||||||||    
T  7926029 tctgaaactcagtctgcttttgtgaaggatagacaaatttttgatggtatcttgattgcgaatgaggtggttgatgaggc 7925950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 309
Target Start/End: Complemental strand, 8301644 - 8301366
Alignment:
Q  31 gtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatcct 130  Q
    ||||| ||| |||| ||||| ||||||||||| |  ||  ||||||| || ||||||||||||||||| || |||||||||||||  ||||| |||||      
T  8301644 gtgcgatttgtaaccgaatttcataggaatggaaaattagcgaaaggcataaattctacgttcattgccctaattcctaaagttgcaagtccacaatctc 8301545  T
Q  131 tgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtc 230  Q
    ||||||||||  | |  || || || ||||||||  | ||||||||  |||| |||||||| || || ||| |||| ||||| || ||||| || |||||    
T  8301544 tgaatgagtttcggcctatctctttagtggggagcatgtataaaattctggcgaaaattctagccaacaggttgaggcaggttatggggagtgtagtgtc 8301445  T
Q  231 ggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggct 309  Q
     || ||||| ||||  ||||| ||| |||| |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  8301444 cgaggctcagtctgcttttgttaaaaacagacaaattcttgatggaattctgatcgctaatgaggtggtagatgaggct 8301366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 29720426 - 29720505
Alignment:
Q  247 tttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaagga 326  Q
    ||||||||||| ||||||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||||||    
T  29720426 tttgtaaaagataggcaaattcttgatgggattctcattgcaaatgaggtggtggatgaggctcgcaaatcaaagaagga 29720505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 16374387 - 16374484
Alignment:
Q  16 atgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagt 113  Q
    ||||||||||| |||||||||||| || ||||||| ||  | ||||||| ||| || |||||||| ||| |||| ||||||||||| |||||||||||    
T  16374387 atgaaggatgagattgtgcgttttgtatctgaatttcaccgcaatgggaagttatccaaaggtatcaatactactttcattgctctcattcctaaagt 16374484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 341
Target Start/End: Complemental strand, 17660484 - 17660372
Alignment:
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatc 328  Q
    ||||||||||| |||| |||||| ||| |||| ||||||||||| |||||||| || || |||||||  || ||||||||| | ||||  ||||| ||||    
T  17660484 tcggatgctcagtctgcgtttgttaaaaacagacaaattcttgacggtattcttatagcaaatgaggctgtggatgaggctaggaaattaaagaaagatc 17660385  T
Q  329 tgttattgtttaa 341  Q
    | || ||||||||    
T  17660384 ttttgttgtttaa 17660372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 45254337 - 45254417
Alignment:
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggct 309  Q
    |||||||||||||| | |||||| ||| | || |||||||||||||||||||| || || |||||||  || |||||||||    
T  45254337 tcggatgctcaatcagcgtttgttaaaaatagacaaattcttgatggtattcttatagcaaatgaggctgtggatgaggct 45254417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 29483040 - 29483089
Alignment:
Q  256 gacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatga 305  Q
    |||| ||||||||||||||| ||||| || |||||||||||||| |||||    
T  29483040 gacatgcaaattcttgatggaattcttatagctaatgaggtggtggatga 29483089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 33514472 - 33514803
Alignment:
Q  12 tgagatgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaa 111  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33514472 tgagatgaaggatgatactgtgcgatttctaactgaattccatacgaatgggaggttgtcgaaaggtattaattctacgttcattactcttattcctaaa 33514571  T
Q  112 gttgagagtccgcaatccttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacagg 211  Q
    |||||||| || ||||| ||||||||||| ||||  |||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |    
T  33514572 gttgagagcccacaatctttgaatgagtttagacctatatcgctggtggggagtctttataaaattttggcaaaaattctagcaaataggctgagacaag 33514671  T
Q  212 tcattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcg 311  Q
    | |||| |||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33514672 ttattgtgagcgttgtgtcggatgctcaatctgcgtttgtgaaagataggcaaattcttgatggtattctgatagctaatgaggtggttgatgaggctcg 33514771  T
Q  312 taaatccaagaaggatctgttattgtttaaag 343  Q
    ||||||||||||||||||||| ||||| ||||    
T  33514772 taaatccaagaaggatctgttgttgttcaaag 33514803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 3152333 - 3152395
Alignment:
Q  246 gtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    ||||||||||||  | ||||||||||||||||||||  | |||||||||||||| ||||||||    
T  3152333 gtttgtaaaagatcgccaaattcttgatggtattctagtagctaatgaggtggtggatgaggc 3152395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 7458203 - 7458133
Alignment:
Q  247 tttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatc 317  Q
    ||||| ||||| ||||| || |||||||| ||||| || || ||||||||||| ||||||||||| |||||    
T  7458203 tttgtgaaagataggcagatccttgatgggattctcattgcaaatgaggtggtggatgaggctcgcaaatc 7458133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 22724030 - 22724079
Alignment:
Q  262 caaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcg 311  Q
    |||||||| |||||||||||||| | |||||| || ||||||||||||||    
T  22724030 caaattctagatggtattctgatagttaatgaagttgttgatgaggctcg 22724079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 22871179 - 22871135
Alignment:
Q  265 attcttgatggtattctgatcgctaatgaggtggttgatgaggct 309  Q
    |||||||||||||| || || |||||||||| |||||||||||||    
T  22871179 attcttgatggtatccttatagctaatgaggcggttgatgaggct 22871135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 1405 - 1095
Alignment:
Q  13 gagatgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaag 112  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||| ||||    
T  1405 gagatgaaggatgatgttgtgcgttttatcactgaattccataggaatgggaagttgtcgaatggtataaattctacattcattgctcttattccgaaag 1306  T
Q  113 ttgagagtccgcaatccttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggt 212  Q
    ||||||| || ||||| ||||||||||| ||||   | ||| ||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||    
T  1305 ttgagagccctcaatctttgaatgagtttagacctgtctcgctggtggggagtctttataaaatattggcaaaaattctagtaaataggttgagacaggt 1206  T
Q  213 cattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgt 312  Q
     |||||||| || ||||| ||| || |||||| |||||| ||| | ||||||||||||||||||||| |||| || ||||||||||| |||||||| ||     
T  1205 tattgggagtgttgtgtcagatacttaatctgcgtttgttaaaaataggcaaattcttgatggtattttgatagccaatgaggtggtggatgaggcgcgc 1106  T
Q  313 aaatccaagaa 323  Q
    ||||| |||||    
T  1105 aaatctaagaa 1095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 33384487 - 33384816
Alignment:
Q  13 gagatgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaag 112  Q
    ||||||||||| ||| ||||| | ||| | ||| | || |||||||| |||||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  33384487 gagatgaaggaggatgttgtgagatttgttactaattttcataggaacgggaggttgtcgaaaggtttaaattctacgttcattgcccttattcctaaag 33384586  T
Q  113 ttgagagtccgcaatccttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggt 212  Q
    | |||||||| |||||||||||||| || |||| ||| |||||||||||||||||||||||||| |||||||||||||| || | || |||  | |||||    
T  33384587 tagagagtcctcaatccttgaatgattttagaccgatttcgttggtggggagtctttataaaattttggcaaaaattctagctactatgctacgtcaggt 33384686  T
Q  213 cattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgt 312  Q
     |||||||| || ||||| |||| | |||| | |||||| ||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||     
T  33384687 tattgggagtgtcgtgtctgatgtttaatccgcgtttgttaaaaataggcaaattcttgatggaattctgatagctaatgaggtggttgatgaggctcgc 33384786  T
Q  313 aaatccaagaaggatctgttattgtttaaa 342  Q
    || || ||||| ||| |||| |||||||||    
T  33384787 aagtctaagaaagatttgttgttgtttaaa 33384816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 25855719 - 25856050
Alignment:
Q  12 tgagatgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaa 111  Q
    ||||||||| || ||| ||||| | ||| | ||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||    
T  25855719 tgagatgaaagaggatgttgtgagatttgtcactgagtttcataggaatgggaggttgtcgaaaggtataaatgctacgttcattgcccttatacctaaa 25855818  T
Q  112 gttgagagtccgcaatccttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacagg 211  Q
    || ||| | || |||||| ||||||| || |||| ||| |||||||||||||||||||||||||| ||||||||  || | || |||||| || | ||||    
T  25855819 gtagagtgccctcaatccctgaatgattttagaccgatttcgttggtggggagtctttataaaattttggcaaagcttatagctaataggttgcgtcagg 25855918  T
Q  212 tcattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcg 311  Q
    | |||||||| || |||||||| | ||| || | |||||| ||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  25855919 ttattgggagtgttgtgtcggacgttcagtccgcgtttgttaaaaataggcaaattcttgatggcattctgatagctaatgaggtggttgatgaggctcg 25856018  T
Q  312 taaatccaagaaggatctgttattgtttaaag 343  Q
    ||| || ||||| |||||||| ||||||||||    
T  25856019 taagtctaagaaagatctgttgttgtttaaag 25856050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 91 - 329
Target Start/End: Original strand, 27164454 - 27164692
Alignment:
Q  91 ttcattgctcttattcctaaagttgagagtccgcaatccttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattc 190  Q
    ||||||||||||||||||||||| ||||||||  | ||||||||||| ||  |||  || |||||| |||| |||||||||||||| ||||||||||| |    
T  27164454 ttcattgctcttattcctaaagtagagagtcctaagtccttgaatgattttcgacctatttcgttgttgggtagtctttataaaattttggcaaaaatcc 27164553  T
Q  191 tggcaaataggctgagacaggtcattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaa 290  Q
    | ||||| ||| |||||||||| || ||||| || ||||| || | |||| |||  ||||| ||| | ||  ||||||||||||| ||||| || |||||    
T  27164554 tagcaaacaggttgagacaggttatcgggagtgttgtgtcagaagttcaacctgcttttgttaaaaatagaaaaattcttgatggaattctaatagctaa 27164653  T
Q  291 tgaggtggttgatgaggctcgtaaatccaagaaggatct 329  Q
    ||||||||| |||||||| | |||||| ||||| |||||    
T  27164654 tgaggtggtcgatgaggcacataaatctaagaaagatct 27164692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 31 - 308
Target Start/End: Complemental strand, 23240222 - 23239945
Alignment:
Q  31 gtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatcct 130  Q
    ||||| ||| |||| ||||| ||||||||||| |  ||  ||||||| || |||||||||||||| || || ||||||||||||| |||||| ||||| |    
T  23240222 gtgcgatttgtaaccgaatttcataggaatggaaaattagcgaaaggcataaattctacgttcatagccctaattcctaaagttgcgagtccacaatctt 23240123  T
Q  131 tgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtc 230  Q
    ||||||||||  | |  || || || ||||||||  | ||||||||  | || |||||||| ||||| ||| |||| ||||| |||||||| || |||||    
T  23240122 tgaatgagtttcggcctatttctttagtggggagcatgtataaaattctagcgaaaattctagcaaacaggttgaggcaggttattgggagtgttgtgtc 23240023  T
Q  231 ggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
     || ||||| ||||  ||||| ||| |||| |||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  23240022 cgaggctcagtctgcttttgttaaaaacagacaaattcttgatggtattttgatcgctaattaggtggtcgatgaggc 23239945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 43 - 308
Target Start/End: Complemental strand, 42515549 - 42515284
Alignment:
Q  43 actgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatccttgaatgagttca 142  Q
    ||||||||||||||||||||||  ||| ||||||| || |||||||| ||||| || ||||||||||||||||  || || ||||| |||||||||||      
T  42515549 actgaattccataggaatgggaaattgacgaaaggcataaattctacattcatcgcccttattcctaaagttgctagccctcaatcgttgaatgagtttc 42515450  T
Q  143 gactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtcggatgctcaatc 242  Q
    | |  || || |||||||||||  | || ||||| ||||| |||||||| ||||| ||| |||| ||||| |||||||| || ||||| ||  |||| ||    
T  42515449 gccctatttctttggtggggagcttgtacaaaattttggcgaaaattctagcaaacaggttgaggcaggttattgggagtgttgtgtctgaaactcagtc 42515350  T
Q  243 tgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    ||  ||||| || || || |||||||||||||||||  |||| || ||||||||||||||||||||    
T  42515349 tgcttttgtgaaggatagacaaattcttgatggtatcttgattgcgaatgaggtggttgatgaggc 42515284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 52 - 343
Target Start/End: Complemental strand, 33171478 - 33171187
Alignment:
Q  52 cataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatccttgaatgagttcagactgatat 151  Q
    ||||||||||| |  ||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||  | |||||||| ||  |||  || |    
T  33171478 cataggaatggaaaattgtcaaaaggtataaattctacgtttattgctcttattcctaaagttgacagtcctcagacattgaatgattttcgacccattt 33171379  T
Q  152 cgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtcggatgctcaatctgtgtttgt 251  Q
    ||||||||||  | || ||||||||  |||||||| ||||||| || ||| ||||||| || ||||| || || ||||| || | |||||| |  || ||    
T  33171378 cgttggtgggatgcctctataaaattatggcaaaagttctggcgaacaggttgagacaagttattggcagtgttgtgtctgaagttcaatcagctttcgt 33171279  T
Q  252 aaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatctgttattgtttaaag 343  Q
     ||  | || |||||||||||||| ||  |||| || |||||||||||||||||||| || ||||| ||||| || || ||| |||||||||    
T  33171278 taagaatagacaaattcttgatggaatcttgatagcaaatgaggtggttgatgaggcccgaaaatcgaagaaagagcttttaatgtttaaag 33171187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 341
Target Start/End: Original strand, 6999500 - 6999612
Alignment:
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatc 328  Q
    ||||||||||| |||| |||||| ||| |||| || ||||||||||||||||| || |||||||||| ||| ||||||||| | ||||  ||||| ||||    
T  6999500 tcggatgctcagtctgcgtttgttaaaaacagacatattcttgatggtattcttatagctaatgaggcggtggatgaggctaggaaattgaagaaagatc 6999599  T
Q  329 tgttattgtttaa 341  Q
    | || ||||||||    
T  6999600 ttttgttgtttaa 6999612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 308
Target Start/End: Original strand, 30730760 - 30730890
Alignment:
Q  178 ttggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggta 277  Q
    ||||| |||||||| ||||| | | |||| ||||| ||||| || || ||||||||  |||| ||||  ||||| || || || ||||||||||||||||    
T  30730760 ttggcgaaaattctagcaaacaagttgaggcaggttattggaagtgttgtgtcggaaactcagtctgcttttgtgaaggatagacaaattcttgatggta 30730859  T
Q  278 ttctgatcgctaatgaggtggttgatgaggc 308  Q
    |  ||||||| ||||||||||||||||||||    
T  30730860 tcttgatcgcgaatgaggtggttgatgaggc 30730890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 6050883 - 6050803
Alignment:
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggct 309  Q
    |||||||||||||| | |||||| ||| |||  |||||||||||||||||||| || || |||||||| || |||||||||    
T  6050883 tcggatgctcaatcagcgtttgttaaaaacaaacaaattcttgatggtattcttatagcaaatgaggttgtggatgaggct 6050803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 21823141 - 21823188
Alignment:
Q  262 caaattcttgatggtattctgatcgctaatgaggtggttgatgaggct 309  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||||    
T  21823141 caaattcttgatggtattcttattgctaatgaggttgttgatgaggct 21823188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 12833721 - 12833591
Alignment:
Q  52 cataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatccttgaatgagttcagactgatat 151  Q
    ||||||||||| |||||| | ||||| || |||   ||||||||||||||||||||||| ||||| || || ||    ||| |||| ||||||||||| |    
T  12833721 cataggaatggaaggttgaccaaagggataaatagcacgttcattgctcttattcctaaggttgacagccctcagcggttggatgatttcagactgattt 12833622  T
Q  152 cgttggtggggagtctttataaaatattggc 182  Q
    || ||||||| ||| | ||||| ||||||||    
T  12833621 cgctggtgggtagtttgtataagatattggc 12833591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 30728639 - 30728751
Alignment:
Q  29 ttgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatc 128  Q
    ||||||| ||| | || ||| |||||||||||||||  ||  ||||||| || |||||||| |||||  | ||||||||||||||||  || || |||||    
T  30728639 ttgtgcgctttgtgaccgaaatccataggaatgggaaattaacgaaaggcataaattctacattcataacccttattcctaaagttgctagcccacaatc 30728738  T
Q  129 cttgaatgagttc 141  Q
     ||||||||||||    
T  30728739 tttgaatgagttc 30728751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 299
Target Start/End: Complemental strand, 1822456 - 1822422
Alignment:
Q  265 attcttgatggtattctgatcgctaatgaggtggt 299  Q
    |||||||||||||||||||| ||||||||||||||    
T  1822456 attcttgatggtattctgatagctaatgaggtggt 1822422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 10485487 - 10485533
Alignment:
Q  265 attcttgatggtattctgatcgctaatgaggtggttgatgaggctcg 311  Q
    ||||| ||||||||| |||| |||||||||||||| |||||||||||    
T  10485487 attctcgatggtattttgatagctaatgaggtggtggatgaggctcg 10485533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 12865699 - 12865569
Alignment:
Q  52 cataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatccttgaatgagttcagactgatat 151  Q
    ||||||||||| |||||| | ||||| || |||   ||||||||||||||||||||||| ||||| || || ||    ||| |||| ||||||||||| |    
T  12865699 cataggaatggaaggttgaccaaagggataaatagcacgttcattgctcttattcctaaggttgacagccctcagcggttggatgatttcagactgattt 12865600  T
Q  152 cgttggtggggagtctttataaaatattggc 182  Q
    || ||||||  ||| | ||||| ||||||||    
T  12865599 cgctggtggttagtttgtataagatattggc 12865569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 25591920 - 25591852
Alignment:
Q  247 tttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaa 315  Q
    ||||||||| | || |||||||| ||||| ||| |||| | |||||| || ||||||||||||||||||    
T  25591920 tttgtaaaaaatagacaaattctggatgggattttgatagataatgaagttgttgatgaggctcgtaaa 25591852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 7e-71; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 17604614 - 17604945
Alignment:
Q  12 tgagatgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaa 111  Q
    ||||| |||||| ||| ||||| | ||| | |||||||| ||||| || |||||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  17604614 tgagaggaaggaggatgttgtgagatttgttactgaatttcatagaaacgggaggttgtcgaaaggtataaattctacgttcattgcccttatccctaaa 17604713  T
Q  112 gttgagagtccgcaatccttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacagg 211  Q
    || ||| | || |||||||||||||| ||||||| ||| ||||||||||||||||||||||||||  |||||||  |||| || |||||| ||   ||||    
T  17604714 gtagagtgccctcaatccttgaatgatttcagaccgatttcgttggtggggagtctttataaaattctggcaaagcttctagccaataggttgcatcagg 17604813  T
Q  212 tcattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcg 311  Q
    |  ||||||| || ||||| |||| |||||| | |||||| ||| | ||||||||||||||||| |||||||| || |||||||||||||||||||||||    
T  17604814 ttgttgggagtgttgtgtctgatgttcaatccgcgtttgttaaaaataggcaaattcttgatggaattctgatagccaatgaggtggttgatgaggctcg 17604913  T
Q  312 taaatccaagaaggatctgttattgtttaaag 343  Q
    ||| || ||||| ||| |||| ||||||||||    
T  17604914 taagtctaagaaagatatgttgttgtttaaag 17604945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 208 - 343
Target Start/End: Original strand, 17576193 - 17576328
Alignment:
Q  208 caggtcattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgagg 307  Q
    ||||| |||||||| || |||||||| | ||| || | |||||| ||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  17576193 caggttattgggagtgttgtgtcggacgttcagtccgcgtttgttaaaaataggcaaattcttgatggcattctgatagctaatgaggtggttgatgagg 17576292  T
Q  308 ctcgtaaatccaagaaggatctgttattgtttaaag 343  Q
    ||||||| || ||||| |||||||| ||||||||||    
T  17576293 ctcgtaagtctaagaaagatctgttgttgtttaaag 17576328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 329
Target Start/End: Original strand, 15955299 - 15955580
Alignment:
Q  46 gaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatccttgaatgagttcagac 145  Q
    ||||| ||| ||||||| | ||||||||||||||| |||| || |||||||||||| || ||||||||||||||||| |||||||||||||| ||  |||    
T  15955299 gaatttcattggaatggaaagttgtcgaaaggtataaattatatgttcattgctctaatacctaaagttgagagtcctcaatccttgaatgattttcgac 15955398  T
Q  146 tgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtcggatgctcaatctgt 245  Q
      || ||  | ||||| ||||  ||||||||  ||||||||||| | | ||| ||| ||||||||||||||||||| || ||||| || |  | || ||     
T  15955399 ctatttcactagtgggaagtc--tataaaattctggcaaaaattgtaggaaacaggttgagacaggtcattgggagtgttgtgtcagaagtcctatttgc 15955496  T
Q  246 gtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatct 329  Q
     ||||| ||| | ||  ||||||||||||  |||||||| ||||||||||| || |||||||| || ||| | ||||| |||||    
T  15955497 atttgttaaaaatagataaattcttgatgaaattctgatagctaatgaggttgtcgatgaggcacgaaaaactaagaaagatct 15955580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 343
Target Start/End: Original strand, 18680914 - 18681187
Alignment:
Q  70 tcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatccttgaatgagttcagactgatatcgttggtggggagtcttt 169  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||| |||||||   | || |||| ||| ||  |||  || |||||||||||||||||||    
T  18680914 tcgaaaggtataaattctacgtttatttctcttattcctaaagtcgagagtctttagtcgttgattgatttttgacccatttcgttggtggggagtcttt 18681013  T
Q  170 ataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattct 269  Q
    |||| ||  ||| |||| ||   ||||| ||| ||||||| || ||||| || ||  |||| || | |||||| |  ||||||||| | || ||||||||    
T  18681014 ataagatcctggaaaaagtttcagcaaacaggttgagacacgttattggcagtgttatgtcagaagttcaatccgcctttgtaaaaaatagacaaattct 18681113  T
Q  270 tgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatctgttattgtttaaag 343  Q
    |||||| ||  |||| ||||| ||| |||||||||||||||| ||| | ||||| || || || ||||||||||    
T  18681114 tgatggaatcttgatagctaacgagttggttgatgaggctcgaaaaacgaagaaagagcttttgttgtttaaag 18681187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 343
Target Start/End: Complemental strand, 13939537 - 13939246
Alignment:
Q  52 cataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatccttgaatgagttcagactgatat 151  Q
    ||||||||||| |  ||||| |||||||| |||| |||||| |||||||||||||||||||| || | ||| ||  | |||||||| ||  |||   | |    
T  13939537 cataggaatggaaaattgtcaaaaggtataaattttacgtttattgctcttattcctaaagtagacaatcctcagacattgaatgattttcgaccctttt 13939438  T
Q  152 cgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtcggatgctcaatctgtgtttgt 251  Q
    ||||||||||  | || ||||||||  |||||||  ||||||| || ||| |||||||||| ||||| || || ||||  || | |||||| |  || ||    
T  13939437 cgttggtgggatgcctctataaaattctggcaaattttctggcgaacaggttgagacaggttattggcagtgttgtgtttgaagttcaatcagctttcgt 13939338  T
Q  252 aaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatctgttattgtttaaag 343  Q
     ||| | || |||||| ||||||| ||  |||| || |||||||||||||||||||| || ||||| ||||| || || ||| |||||||||    
T  13939337 taaaaatagacaaattattgatggaatcttgatagcaaatgaggtggttgatgaggcccgaaaatcgaagaaagagcttttaatgtttaaag 13939246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 2555212 - 2555133
Alignment:
Q  264 aattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatctgttattgtttaaag 343  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||  | ||||| ||||| ||||| || ||||| ||||    
T  2555212 aattcttcatggtattttgatcgctaatgaggtggttgatgaggcaaggaaatctaagaaagatcttttgttgttcaaag 2555133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 26207188 - 26207082
Alignment:
Q  16 atgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttg 115  Q
    ||||||||||| |||||||| ||| |  ||||||||||  | ||||||| | | || |||||||| ||| |||| ||||||||||| |||||||||||||    
T  26207188 atgaaggatgagattgtgcgctttgtgtctgaattccaccgcaatgggaagctatccaaaggtatcaatactactttcattgctctcattcctaaagttg 26207089  T
Q  116 agagtcc 122  Q
    | |||||    
T  26207088 atagtcc 26207082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 1307164 - 1307243
Alignment:
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    |||||| |||| || | ||||||||||||  | ||||||||||||||||||||  | |||||||||||||| ||||||||    
T  1307164 tcggatactcagtcagcgtttgtaaaagatcgccaaattcttgatggtattctagtagctaatgaggtggtggatgaggc 1307243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 16479769 - 16479722
Alignment:
Q  262 caaattcttgatggtattctgatcgctaatgaggtggttgatgaggct 309  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||||    
T  16479769 caaattcttgatggtattcttattgctaatgaggttgttgatgaggct 16479722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 18487630 - 18487677
Alignment:
Q  262 caaattcttgatggtattctgatcgctaatgaggtggttgatgaggct 309  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||||    
T  18487630 caaattcttgatggtattcttattgctaatgaggttgttgatgaggct 18487677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 15675688 - 15675591
Alignment:
Q  16 atgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagt 113  Q
    ||||||||||| |||||||||||| |   |||||||||  | ||||| | ||| || |||||||| ||| |||| ||||||||||| |||||||||||    
T  15675688 atgaaggatgagattgtgcgttttgtttttgaattccaccgcaatggaaagttatccaaaggtatcaatactacattcattgctctcattcctaaagt 15675591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 19155497 - 19155424
Alignment:
Q  46 gaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagag 119  Q
    ||||| |||||||||||||||||| | ||||| || |||  ||| ||||| |||||||||||||| ||||||||    
T  19155497 gaatttcataggaatgggaggttgaccaaaggaataaatagtactttcatcgctcttattcctaaggttgagag 19155424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 341
Target Start/End: Original strand, 11059359 - 11059471
Alignment:
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatc 328  Q
    ||||||||||| ||||  ||||| ||| | || |||||||||||||||||||| || || |||||||  || ||||||||| | ||||  ||||| ||||    
T  11059359 tcggatgctcagtctgcatttgttaaaaagagacaaattcttgatggtattcttatagcaaatgaggctgtggatgaggctaggaaatttaagaaagatc 11059458  T
Q  329 tgttattgtttaa 341  Q
    | || ||||||||    
T  11059459 ttttgttgtttaa 11059471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 26511822 - 26511778
Alignment:
Q  265 attcttgatggtattctgatcgctaatgaggtggttgatgaggct 309  Q
    ||||||||||||||| |||| |||||||||||||| |||||||||    
T  26511822 attcttgatggtattttgattgctaatgaggtggtagatgaggct 26511778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 26516938 - 26516894
Alignment:
Q  265 attcttgatggtattctgatcgctaatgaggtggttgatgaggct 309  Q
    ||||||||||||||| |||| |||||||||||||| |||||||||    
T  26516938 attcttgatggtattttgattgctaatgaggtggtagatgaggct 26516894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 17712111 - 17712178
Alignment:
Q  247 tttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaa 314  Q
    ||||| || ||||| |||||||||||||||||||| || || ||||| || |||||||| ||||||||    
T  17712111 tttgtgaaggacagacaaattcttgatggtattcttattgcaaatgaagttgttgatgaagctcgtaa 17712178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 25351849 - 25351786
Alignment:
Q  246 gtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggct 309  Q
    |||||||||| | || ||||| |||||||| ||| |||| |||||||||||||| |||||||||    
T  25351849 gtttgtaaaaaatagacaaatccttgatggcattttgatagctaatgaggtggtcgatgaggct 25351786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 21550456 - 21550404
Alignment:
Q  262 caaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaa 314  Q
    ||||||||||| ||||| || || ||||||||| | |||||||||||||||||    
T  21550456 caaattcttgacggtatccttattgctaatgagattgttgatgaggctcgtaa 21550404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 12333368 - 12333699
Alignment:
Q  12 tgagatgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaa 111  Q
    |||||||||||| ||| ||||| | ||| | |||||||| |||||||| |||| ||||||||||||||| ||| ||||||||||||| ||||| ||||||    
T  12333368 tgagatgaaggaggatgttgtgagatttgttactgaatttcataggaacgggatgttgtcgaaaggtataaatgctacgttcattgcccttatccctaaa 12333467  T
Q  112 gttgagagtccgcaatccttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacagg 211  Q
    || ||| | || |||||||||||||| || |||| ||| ||||||||||||||||||||||||||  |||||||  |||| || |||||| || | ||||    
T  12333468 gtagagtgccctcaatccttgaatgattttagaccgatttcgttggtggggagtctttataaaattatggcaaagcttctagctaataggttgcgtcagg 12333567  T
Q  212 tcattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcg 311  Q
    | |||||||| || ||||| |||| ||||||   |||||| ||| | ||||||||||||||||| |||||||| || |||||||||||| |||||||||     
T  12333568 ttattgggagtgttgtgtctgatgttcaatccacgtttgttaaaaataggcaaattcttgatggaattctgatagccaatgaggtggttaatgaggctca 12333667  T
Q  312 taaatccaagaaggatctgttattgtttaaag 343  Q
    ||| |||||||| |||||||| ||||||||||    
T  12333668 taagtccaagaaagatctgttgttgtttaaag 12333699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 46 - 317
Target Start/End: Complemental strand, 16186137 - 16185866
Alignment:
Q  46 gaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatccttgaatgagttcagac 145  Q
    ||||| |||||||||||||  |||||||||||||| ||||||||||||||||| || ||| |||||||||||||| | || || |||||||| ||  |||    
T  16186137 gaatttcataggaatgggaaattgtcgaaaggtataaattctacgttcattgcactgattgctaaagttgagagtacccagtctttgaatgattttcgac 16186038  T
Q  146 tgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtcggatgctcaatctgt 245  Q
      || ||||||||||| |||||||||||||| |||||||||||| | ||||| ||| |||||||||| ||||  || || ||||| || |  |||||||     
T  16186037 ccatttcgttggtgggtagtctttataaaattttggcaaaaattttagcaaacaggttgagacaggtgattgccagtgttgtgtctgaggtgcaatctgc 16185938  T
Q  246 gtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatc 317  Q
     ||||||||| | || |||||||||||||  ||| |||| ||||||||||||||| ||||||||||||||||    
T  16185937 ctttgtaaaaaatagacaaattcttgatgcaattatgatagctaatgaggtggttaatgaggctcgtaaatc 16185866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 52 - 343
Target Start/End: Original strand, 961483 - 961774
Alignment:
Q  52 cataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatccttgaatgagttcagactgatat 151  Q
    ||||||||||| |  ||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||  | |||||||| ||  |||  || |    
T  961483 cataggaatggaaaattgtcaaaaggtataaattctacgtttattgctcttattcctaaagttgacagtcctcagacattgaatgatttttgacccattt 961582  T
Q  152 cgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtcggatgctcaatctgtgtttgt 251  Q
     |||||||||  | || ||||||||  |||||||| ||||||| || ||| |||||||| | ||||| || || ||||| || | |||||| |  || ||    
T  961583 tgttggtgggatgcctctataaaattctggcaaaagttctggcgaacaggttgagacagattattggcagtgttgtgtctgaagttcaatcagctttcgt 961682  T
Q  252 aaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatctgttattgtttaaag 343  Q
     ||| | || |||||||||||||| ||  |||| || |||||||||||||||||||| || ||||| ||||| || || ||| |||||||||    
T  961683 taaaaatagacaaattcttgatggaatcttgatagcaaatgaggtggttgatgaggcccgaaaatcgaagaaagagcttttaatgtttaaag 961774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 29 - 308
Target Start/End: Complemental strand, 2366121 - 2365842
Alignment:
Q  29 ttgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatc 128  Q
    ||||||| ||| | ||||||||||||||||||||||  ||| ||||||| || |||||||| ||||| || |||||||||||||| |  || || |||||    
T  2366121 ttgtgcgctttgtgactgaattccataggaatgggaaattgacgaaaggcataaattctacattcatcgcccttattcctaaagtggctagccctcaatc 2366022  T
Q  129 cttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtg 228  Q
     |||||||||||  | |  || || |||||||||||  | || ||||| ||||| |||||||| ||||| ||| |||| ||||| |||||||| || |||    
T  2366021 gttgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctagcaaacaggttgaggcaggttattgggagtgttgtg 2365922  T
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    || ||  |||| ||||  ||||| || || || |||||| ||||||||||  |||| |  ||||||||||||||||||||    
T  2365921 tctgaaactcagtctgcttttgtgaaggatagacaaattattgatggtatcttgattgtgaatgaggtggttgatgaggc 2365842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 19918529 - 19918808
Alignment:
Q  29 ttgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatc 128  Q
    ||||||| ||| | || ||||| |||||||||||||  ||  ||||||| || |||||||| |||||  |  |||||||||||||||  ||||| |||||    
T  19918529 ttgtgcgctttgtgaccgaatttcataggaatgggaaattaacgaaaggcatcaattctacattcataacctttattcctaaagttgctagtccacaatc 19918628  T
Q  129 cttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtg 228  Q
     |||||||||||| | |  || || |||||||||||  | || ||||| ||||| ||||| || ||||| ||| ||||  |||| |||||||| || |||    
T  19918629 tttgaatgagttccgccctatttctttggtggggagcttgtacaaaattttggcgaaaatcctagcaaacaggttgaggtaggttattgggagtgttgtg 19918728  T
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
     ||||  |||| ||||  ||||| || || || |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  19918729 gcggaaactcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgcgaatgaggtggttgatgaggc 19918808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 323
Target Start/End: Original strand, 17076721 - 17076893
Alignment:
Q  151 tcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtcggatgctcaatctgtgtttg 250  Q
    ||||||||||| ||||||||||||||| | ||||||||  | ||||| | | |||||| ||| | ||| || ||  |||| || | ||||||||  ||||    
T  17076721 tcgttggtgggtagtctttataaaatacttgcaaaaatcttagcaaacaagttgagacgggttaatggaagtgttctgtcagaagttcaatctgcctttg 17076820  T
Q  251 taaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaa 323  Q
    ||||| | || ||||| |||||||| ||||||||  | ||||||||||||||||||||||  ||||| |||||    
T  17076821 taaaaaatagacaaatacttgatggaattctgataccaaatgaggtggttgatgaggctcacaaatcgaagaa 17076893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 341
Target Start/End: Original strand, 30165856 - 30165932
Alignment:
Q  265 attcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatctgttattgtttaa 341  Q
    ||||||||||||||| |||| |||||||| ||||| |||||||||||    | |||||||||||| || ||||||||    
T  30165856 attcttgatggtattttgatagctaatgaagtggtggatgaggctcgacgttgcaagaaggatcttttgttgtttaa 30165932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 37443483 - 37443448
Alignment:
Q  91 ttcattgctcttattcctaaagttgagagtccgcaa 126  Q
    |||||||||||||||||||| |||||||||||||||    
T  37443483 ttcattgctcttattcctaaggttgagagtccgcaa 37443448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 17076639 - 17076689
Alignment:
Q  47 aattccataggaatgggaggttgtcgaaaggtattaattctacgttcattg 97  Q
    |||| ||||||||||| |  |||||||||||||| ||||||||||||||||    
T  17076639 aatttcataggaatggaaaattgtcgaaaggtataaattctacgttcattg 17076689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 14606928 - 14606989
Alignment:
Q  247 tttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    |||||||| || || ||||||||||| |  ||||| || |||||||||||||||||||||||    
T  14606928 tttgtaaaggatagacaaattcttgacgacattcttatagctaatgaggtggttgatgaggc 14606989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 21739028 - 21739105
Alignment:
Q  266 ttcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatctgttattgtttaaag 343  Q
    |||||||||| |||||||| ||||||||||| |||||||| ||  |||| | ||||||||| ||  | ||||||||||    
T  21739028 ttcttgatggaattctgatagctaatgaggttgttgatgaagcaagtaagttcaagaaggacctcatgttgtttaaag 21739105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 31676544 - 31676492
Alignment:
Q  259 aggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcg 311  Q
    ||||||||||| ||||| ||| |||| ||||||||||| || |||||||||||    
T  31676544 aggcaaattctagatggaattttgattgctaatgaggttgtcgatgaggctcg 31676492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 31919879 - 31919931
Alignment:
Q  259 aggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcg 311  Q
    ||||||||||| ||||| ||| |||| ||||||||||| || |||||||||||    
T  31919879 aggcaaattctagatggaattttgattgctaatgaggttgtcgatgaggctcg 31919931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 28 - 343
Target Start/End: Complemental strand, 17722479 - 17722164
Alignment:
Q  28 attgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaat 127  Q
    |||||||||||| | || ||||||||||||||| |||  || ||||||||||||||||||| |||||| || || ||||||||||| |  ||||| ||||    
T  17722479 attgtgcgttttgttaccgaattccataggaataggaaattatcgaaaggtattaattctaggttcatcgccctaattcctaaagtagctagtcctcaat 17722380  T
Q  128 ccttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggt 227  Q
    | |||||||||||  | |  || || |||||||||||||| |||||||| || || |||||||| ||||| ||| |||||||||| |||||||| || ||    
T  17722379 cgttgaatgagtttcgccctatttctttggtggggagtctgtataaaattttagcgaaaattctagcaaacaggttgagacaggttattgggagtgttgt 17722280  T
Q  228 gtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggat 327  Q
    ||| || | ||| ||||  ||||| ||| |||| || ||||||||||| ||| ||||| ||||||||||||| ||||||||| | ||||| ||||| ||     
T  17722279 gtcagaagttcagtctgcttttgttaaaaacagacagattcttgatggaattttgatcactaatgaggtggtcgatgaggctaggaaatctaagaaagac 17722180  T
Q  328 ctgttattgtttaaag 343  Q
    || |||||||||||||    
T  17722179 cttttattgtttaaag 17722164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 31 - 308
Target Start/End: Complemental strand, 29969815 - 29969538
Alignment:
Q  31 gtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatcct 130  Q
    ||||| ||| |||| ||||| ||||||||||| |  ||  ||||||  || ||||||||||||||||| || |||||||||||||  ||||| ||||| |    
T  29969815 gtgcgatttgtaaccgaatttcataggaatggaaaattagcgaaagacataaattctacgttcattgccctaattcctaaagttgcaagtccacaatctt 29969716  T
Q  131 tgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtc 230  Q
    ||||||||||  | |  || || || ||||||||  | ||||||||  |||| |||||||| || || ||| |||| ||||| |||||||| || |||||    
T  29969715 tgaatgagtttcggcctatttctttagtggggagcatgtataaaattctggcgaaaattctagctaacaggttgaggcaggttattgggagtgttgtgtc 29969616  T
Q  231 ggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
     || ||||| ||||  ||||| ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  29969615 cgaggctcagtctgcttttgttaaaaacagacaaattcttgatggtattctgatcgctaatgaggtggtagatgaggc 29969538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 4936425 - 4936704
Alignment:
Q  29 ttgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatc 128  Q
    ||||||| ||| | || ||||||||||||||||||| |||  ||||||| || |||||||| ||||| || ||||||||||||||||  || || |||||    
T  4936425 ttgtgcgctttgtgaccgaattccataggaatgggaagttaacgaaaggcataaattctacattcatcgcccttattcctaaagttgctagccctcaatc 4936524  T
Q  129 cttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtg 228  Q
     ||||||||||   | |  || || || ||||||||| | || ||||| ||||| |||||||| ||||| ||| |||| ||||| |||||||| || |||    
T  4936525 gttgaatgagtatcgccctatttctttcgtggggagtttgtacaaaattttggcgaaaattctagcaaacaggttgaggcaggttattgggagtgttgtg 4936624  T
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    || ||  |||| ||||  ||||| || || || |||||||||||||||||  |||| || ||||||||||||||||||||    
T  4936625 tctgaaactcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgattgcgaatgaggtggttgatgaggc 4936704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 311
Target Start/End: Original strand, 33795573 - 33795655
Alignment:
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcg 311  Q
    |||||| ||||||| | |||||| ||| | ||| ||||||||||||| |||||||| ||||||||||| || |||||||||||    
T  33795573 tcggattctcaatcggcgtttgttaaaaataggaaaattcttgatgggattctgatagctaatgaggttgtcgatgaggctcg 33795655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 4166293 - 4166372
Alignment:
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    |||||| |||| || | ||||||||||||  | ||||||||||||||||||||  | |||||||||||||| ||||||||    
T  4166293 tcggatactcagtcagcgtttgtaaaagatcgccaaattcttgatggtattctagtagctaatgaggtggtggatgaggc 4166372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 34207973 - 34207894
Alignment:
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    |||||| |||| || | ||||||||||||  | ||||||||||||||||||||  | |||||||||||||| ||||||||    
T  34207973 tcggatactcagtcagcgtttgtaaaagatcgccaaattcttgatggtattctagtagctaatgaggtggtggatgaggc 34207894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 13441914 - 13441817
Alignment:
Q  16 atgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagt 113  Q
    ||||||||||| |||||||||||| |   |||||| ||  | ||||||| | | || |||||||| ||| |||| ||||||||||| |||||||||||    
T  13441914 atgaaggatgagattgtgcgttttgtttatgaatttcaccgcaatgggaagctttccaaaggtatcaatactactttcattgctctcattcctaaagt 13441817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 343
Target Start/End: Complemental strand, 45460938 - 45460841
Alignment:
Q  246 gtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatctgttattgtttaaag 343  Q
    |||||||||| |  |||||||  ||||||||||| |  | ||||||||||||||||||||||| || || |  ||||| ||  |||||||||||||||    
T  45460938 gtttgtaaaaaattggcaaatcattgatggtattttagtagctaatgaggtggttgatgaggcccgcaagttgaagaaagaattgttattgtttaaag 45460841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 47621355 - 47621666
Alignment:
Q  12 tgagatgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaa 111  Q
    |||| ||||||||||| ||||||| ||| |  | ||||| ||||||||||| | ||| ||||||||||| |||||||||||||||||| | |||||||||    
T  47621355 tgagttgaaggatgatgttgtgcgatttgtttcagaatttcataggaatggtaagttatcgaaaggtataaattctacgttcattgctttaattcctaaa 47621454  T
Q  112 gttgagagtccgcaatccttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacagg 211  Q
    ||||||||||| ||||| |||||||| ||  | |  || ||  ||||||| ||||| |||||||  |||||||||||||| ||||| |||||  |||| |    
T  47621455 gttgagagtcctcaatctttgaatgattttcgtcctatttctctggtgggaagtctctataaaagtttggcaaaaattctagcaaacaggcttcgacaag 47621554  T
Q  212 tcattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcg 311  Q
    |||||||||| || ||||| || |  |  |||| |||||| | ||| || |||||||||||||| |||||||| ||||||||||| || |||||||||||    
T  47621555 tcattgggagtgtagtgtcagaagtgcggtctgcgtttgttagagatagacaaattcttgatggaattctgatagctaatgaggttgtcgatgaggctcg 47621654  T
Q  312 taaatccaagaa 323  Q
     ||| |||||||    
T  47621655 aaaaaccaagaa 47621666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 29 - 308
Target Start/End: Complemental strand, 6052446 - 6052167
Alignment:
Q  29 ttgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatc 128  Q
    ||||||| ||| | ||||||||||||||||||||||  ||| ||||||| || |||||||| ||||| || ||||||||||||||||  || || |||||    
T  6052446 ttgtgcgctttgtgactgaattccataggaatgggaaattgacgaaaggcataaattctacattcatcgcccttattcctaaagttgctagccctcaatc 6052347  T
Q  129 cttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtg 228  Q
     |||||||||||  | |  || || |||||||||||  | || ||||| ||||| |||||||| ||||| | | |||| ||||| |||||||| || |||    
T  6052346 gttgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctagcaaacaagttgaggcaggttattgggagtgttgtg 6052247  T
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    || ||  |||| ||||  ||||| || || || |||||||||||||||||  |||| || ||||||||||||||||||||    
T  6052246 tctgaaactcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgattgcgaatgaggtggttgatgaggc 6052167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 169 - 309
Target Start/End: Complemental strand, 35542737 - 35542597
Alignment:
Q  169 tataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattc 268  Q
    ||||||||  |||| ||||||||||| || ||| |||| ||||| |||||||| || ||||| || ||||| ||||  ||||| ||| |||| |||||||    
T  35542737 tataaaattctggcgaaaattctggccaacaggttgaggcaggttattgggagtgtagtgtccgaggctcagtctgcttttgttaaaaacagacaaattc 35542638  T
Q  269 ttgatggtattctgatcgctaatgaggtggttgatgaggct 309  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  35542637 ttgatggaattctgatcgctaatgaggtggtagatgaggct 35542597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 25527995 - 25528071
Alignment:
Q  46 gaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtcc 122  Q
    ||||| ||||||||||| |||||| | ||||| ||||||  ||| |||||||||||||| ||||| ||||| |||||    
T  25527995 gaatttcataggaatggaaggttgaccaaagggattaatagtactttcattgctcttatccctaaggttgatagtcc 25528071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 5498870 - 5498764
Alignment:
Q  16 atgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttg 115  Q
    ||||||||||| |||||||| ||| |  ||||||||||  | ||||||| | | || |||||||| ||| |||| |||||||| || ||||||||||| |    
T  5498870 atgaaggatgaaattgtgcgctttgtgtctgaattccaccgcaatgggaagctatccaaaggtatcaatactactttcattgccctcattcctaaagtag 5498771  T
Q  116 agagtcc 122  Q
    | |||||    
T  5498770 atagtcc 5498764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 32351596 - 32351693
Alignment:
Q  16 atgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagt 113  Q
    ||||||||||| |||||||||||| |  ||||| | ||  | ||||||| | | || |||||||| ||| |||| ||||||||||| |||||||||||    
T  32351596 atgaaggatgagattgtgcgttttgtttctgaaattcaccgcaatgggaagctttccaaaggtatcaatactactttcattgctctcattcctaaagt 32351693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 343
Target Start/End: Complemental strand, 39431896 - 39431815
Alignment:
Q  262 caaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatctgttattgtttaaag 343  Q
    ||||| ||||||||||||||||| |||||||| || |||||||| |||  ||| |  |||||||||||  | ||||||||||    
T  39431896 caaatccttgatggtattctgatagctaatgaagttgttgatgaagcttttaagttaaagaaggatctcatgttgtttaaag 39431815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 308
Target Start/End: Original strand, 1826834 - 1827117
Alignment:
Q  25 gatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgc 124  Q
    ||||||||||| ||| ||||||||||||||||||||||||  || |||||||| || |||||||||||||| || || |||||||||||||   |||| |    
T  1826834 gatattgtgcgctttgtaactgaattccataggaatgggaaattatcgaaaggcataaattctacgttcatagccctaattcctaaagttgcttgtcctc 1826933  T
Q  125 aatccttgaatgag-ttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcg 223  Q
    |||| ||||||||| ||||  || || || |||||||||||  | |||||||| ||||| |||||||| ||||| |||||  | || ||||||||||| |    
T  1826934 aatctttgaatgagtttcaccct-atttctttggtggggagcatgtataaaattttggcgaaaattcttgcaaacaggctacggcatgtcattgggagtg 1827032  T
Q  224 tggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    | ||||| || ||||| ||||  ||||| ||| |||  |||||||||||||| || |||||||||||||||||||| ||||||||    
T  1827033 ttgtgtcagaggctcagtctgcttttgttaaaaacatacaaattcttgatggaatcctgatcgctaatgaggtggtcgatgaggc 1827117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 11585467 - 11585769
Alignment:
Q  13 gagatgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaag 112  Q
    ||||||||| | ||||| ||||| ||| | || |||||  |||||||||| | | |||| |||||||| |||||||||||||| ||| | || |||||||    
T  11585467 gagatgaagaaggatatagtgcgatttgttacagaatttgataggaatggaaagctgtcaaaaggtataaattctacgttcatcgctttaatacctaaag 11585566  T
Q  113 ttgagagtccgcaatccttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggt 212  Q
    |||||||||| ||||| |||||||| ||  |||  || ||  ||||||| ||||| |||||||| ||||||||| |||| ||||| || || ||||||||    
T  11585567 ttgagagtcctcaatcattgaatgattttcgacctatctcactggtgggaagtctctataaaattttggcaaaagttctagcaaacagactcagacaggt 11585666  T
Q  213 cattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgt 312  Q
    ||| ||||| || ||||| || |  ||||||  ||| || ||| | || |||||||||||||| |||||||| ||||||||||| || ||||| || |||    
T  11585667 catcgggagtgtagtgtcagaagtccaatctacgttcgtcaaaaatagacaaattcttgatggaattctgatagctaatgaggttgtcgatgaagcccgt 11585766  T
Q  313 aaa 315  Q
    |||    
T  11585767 aaa 11585769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 29 - 308
Target Start/End: Complemental strand, 47420647 - 47420368
Alignment:
Q  29 ttgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatc 128  Q
    ||||||| ||| | || ||||||||||||||||||| |||  ||||||| || |||||||| ||||| || ||||||||||||||||  || || |||||    
T  47420647 ttgtgcgctttgtgaccgaattccataggaatgggaagttaacgaaaggcataaattctacattcatcgcccttattcctaaagttgctagccctcaatc 47420548  T
Q  129 cttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtg 228  Q
     ||||||||||   | |  || || |||||||||||| | || ||||| ||||| |||||||| ||||| ||| |||| ||||| |||||||| || |||    
T  47420547 gttgaatgagtatcgccctatttctttggtggggagtttgtacaaaattttggcgaaaattctagcaaacaggttgaggcaggttattgggagtgttgtg 47420448  T
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    || ||  |||| ||||  ||||| || || || |||||||||||||||||  |||| || ||||||||||||||||||||    
T  47420447 tctgaaactcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgattgcgaatgaggtggttgatgaggc 47420368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 46 - 300
Target Start/End: Original strand, 5789251 - 5789505
Alignment:
Q  46 gaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatccttgaatgagtt-caga 144  Q
    ||||| || |||||||| |  |||||||||||||| |||||||||||||||| ||| |||| |||||||||||||||  | || |||||||| || |||     
T  5789251 gaatttcacaggaatggaaaattgtcgaaaggtataaattctacgttcattgttctcattcttaaagttgagagtccatagtctttgaatgattttcagc 5789350  T
Q  145 ctgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtcggatgctcaatctg 244  Q
    |  || || |||||||| ||||||||||||||  ||||||||||| | ||||| ||| ||||||| || ||||| || || ||||| || |  |||||||    
T  5789351 cc-atttcattggtgggtagtctttataaaattatggcaaaaattttagcaaacaggttgagacatgtgattggcagtgttgtgtctgaggtgcaatctg 5789449  T
Q  245 tgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggtt 300  Q
      ||||||||| | || ||||||| |||||| |||||||| |||||||||||||||    
T  5789450 cctttgtaaaaaatagacaaattcgtgatggaattctgatagctaatgaggtggtt 5789505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 52 - 343
Target Start/End: Original strand, 19732308 - 19732599
Alignment:
Q  52 cataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatccttgaatgagttcagactgatat 151  Q
    ||||||||||| |  || ||||||||||| ||||||| ||| |||||||||||||||||||| || ||||| |   | |||||||| ||  |||  || |    
T  19732308 cataggaatggaaaattttcgaaaggtataaattctatgtttattgctcttattcctaaagtagacagtcctcggactttgaatgatttttgacccattt 19732407  T
Q  152 cgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtgtcggatgctcaatctgtgtttgt 251  Q
    ||||||||||  |||| |||||||| ||||||||  |||| ||||| | | ||||| |||| || || || || ||||| |||| |||||| |  |||||    
T  19732408 cgttggtgggatgtctctataaaattttggcaaaggttctagcaaacaagttgagataggttataggcagtgtcgtgtctgatgttcaatcagcttttgt 19732507  T
Q  252 aaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatctgttattgtttaaag 343  Q
    |||| | || |||||||||||||| ||  |||| || |||||||||||||||||||| || ||||| ||||| || || ||| |||||||||    
T  19732508 aaaaaatagacaaattcttgatgggatcttgatagcaaatgaggtggttgatgaggcccgaaaatcgaagaaagagcttttaatgtttaaag 19732599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 17437810 - 17438107
Alignment:
Q  12 tgagatgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaa 111  Q
    |||| |||| ||||||||| || | ||||| |  ||||| |||||||| || | ||||||||||||||||||||| || || |||||||| ||||| ||     
T  17437810 tgagttgaaagatgatattatgagatttatcagagaatttcataggaacggaaagttgtcgaaaggtattaattcaacttttattgctctcattcccaag 17437909  T
Q  112 gttgagagtccgcaatccttgaatgagttcagactgatatcgttggtggggagtctttataaa-atattggcaaaaattctggcaaataggctgagacag 210  Q
    || || ||| | |  || |||||||| ||  ||| |||||| |||||||||||||||||||||  | || || ||| |  | |||||  || ||||||||    
T  17437910 gtggatagtactcggtctttgaatgattttcgaccgatatcattggtggggagtctttataaattttttagctaaagtattagcaaacgggttgagacag 17438009  T
Q  211 gtcattgggagcgtggtgtcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    |||||||| || || ||||| ||  |||| ||||  ||||||||| | ||||||||||||||||| |||  ||| |  |||||| |||| ||||||||    
T  17438010 gtcattggaagtgttgtgtcagaacctcagtctgcttttgtaaaaaataggcaaattcttgatggcatttcgattgtcaatgagatggtggatgaggc 17438107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 54686016 - 54685962
Alignment:
Q  262 caaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaat 316  Q
    ||||| |||||||| |||||||| || ||||||||||||||||||||||||||||    
T  54686016 caaatccttgatgggattctgattgcgaatgaggtggttgatgaggctcgtaaat 54685962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 19308101 - 19308166
Alignment:
Q  246 gtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcg 311  Q
    ||||||||||||  | ||||| ||||||||||||||  | |||||||||||||| |||||||||||    
T  19308101 gtttgtaaaagatcgacaaatccttgatggtattctagtagctaatgaggtggtggatgaggctcg 19308166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 54686246 - 54686189
Alignment:
Q  32 tgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctac 89  Q
    |||||||| | | ||||||||| |||||||| | ||||||||||||||||||||||||    
T  54686246 tgcgttttgttaatgaattccacaggaatggcaagttgtcgaaaggtattaattctac 54686189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 8936688 - 8936632
Alignment:
Q  259 aggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaa 315  Q
    ||||||||||| ||||| ||| |||| ||||||||||| || |||||||||||||||    
T  8936688 aggcaaattctagatgggattttgatagctaatgaggttgtcgatgaggctcgtaaa 8936632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 14551871 - 14551819
Alignment:
Q  58 aatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaa 110  Q
    ||||||| | |||| |||||  |||||||||||||||||||||||||||||||    
T  14551871 aatgggaagctgtcaaaaggcgttaattctacgttcattgctcttattcctaa 14551819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 341
Target Start/End: Complemental strand, 20397208 - 20397096
Alignment:
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatc 328  Q
    ||||||||||| || | |||||| ||| |||| |||||| |||||| |||||| || || |||||||| || ||||||||| | ||||  ||||| ||||    
T  20397208 tcggatgctcagtccgcgtttgtgaaaaacagacaaatttttgatgatattcttatagcaaatgaggttgtggatgaggctaggaaattgaagaaagatc 20397109  T
Q  329 tgttattgtttaa 341  Q
    | || ||||||||    
T  20397108 ttttgttgtttaa 20397096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 14551664 - 14551621
Alignment:
Q  265 attcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    ||||||||||||||||| |||||||||||||  |||||||||||    
T  14551664 attcttgatggtattcttatcgctaatgaggcagttgatgaggc 14551621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 21139974 - 21140017
Alignment:
Q  262 caaattcttgatggtattctgatcgctaatgaggtggttgatga 305  Q
    |||||||||||||| ||||| || ||||||||||||||||||||    
T  21139974 caaattcttgatggcattcttattgctaatgaggtggttgatga 21140017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 23280410 - 23280367
Alignment:
Q  265 attcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||    
T  23280410 attcttgatggtattttgatagctaatgaggtggtggatgaggc 23280367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 43497229 - 43497264
Alignment:
Q  259 aggcaaattcttgatggtattctgatcgctaatgag 294  Q
    ||||||||||||||||||||||| ||||||||||||    
T  43497229 aggcaaattcttgatggtattctcatcgctaatgag 43497264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 7661845 - 7661887
Alignment:
Q  269 ttgatggtattctgatcgctaatgaggtggttgatgaggctcg 311  Q
    ||||||||||| |||| |||||||||||||| |||||||||||    
T  7661845 ttgatggtattttgatagctaatgaggtggtggatgaggctcg 7661887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 8486503 - 8486609
Alignment:
Q  16 atgaaggatgatattgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttg 115  Q
    ||||||||||| |||||| ||||| |   |||||||||  | ||||||| ||| || |||||||| ||| |||| ||||||||||| |||| |||||| |    
T  8486503 atgaaggatgagattgtgtgttttgtttttgaattccaccgcaatgggaagttatccaaaggtatcaatactactttcattgctctcattcataaagtag 8486602  T
Q  116 agagtcc 122  Q
    | |||||    
T  8486603 aaagtcc 8486609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 308
Target Start/End: Original strand, 23641121 - 23641167
Alignment:
Q  262 caaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    |||||||||||||||||  |||| || ||||||||||||||||||||    
T  23641121 caaattcttgatggtatcttgattgcgaatgaggtggttgatgaggc 23641167  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 308
Target Start/End: Original strand, 23646779 - 23646825
Alignment:
Q  262 caaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    |||||||||||||||||  |||| || ||||||||||||||||||||    
T  23646779 caaattcttgatggtatcttgattgcgaatgaggtggttgatgaggc 23646825  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 34977575 - 34977497
Alignment:
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgagg 307  Q
    ||||||| ||| || | |||||| ||| |||| |||||||||||||||||||| || || |||||||| || |||||||    
T  34977575 tcggatgttcagtcggcgtttgttaaaaacagacaaattcttgatggtattctaatagcaaatgaggttgtggatgagg 34977497  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 3128525 - 3128574
Alignment:
Q  262 caaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcg 311  Q
    |||||||||||||||||  |||| |||||||||||||| ||||| |||||    
T  3128525 caaattcttgatggtatattgatagctaatgaggtggtggatgaagctcg 3128574  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 26695538 - 26695486
Alignment:
Q  262 caaattcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaa 314  Q
    ||||||||||| ||||| || || || |||||||| |||||||||||||||||    
T  26695538 caaattcttgacggtatccttattgcaaatgaggtagttgatgaggctcgtaa 26695486  T

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Target: scaffold0034 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 104140 - 104419
Alignment:
Q  29 ttgtgcgttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctcttattcctaaagttgagagtccgcaatc 128  Q
    ||||||| ||| | ||||||||||||||||||||||  ||| ||||||| || |||||||| ||||| || ||||||||||||||||  || || |||||    
T  104140 ttgtgcgctttgtgactgaattccataggaatgggaaattgacgaaaggcataaattctacattcatcgcccttattcctaaagttgctagccctcaatc 104239  T
Q  129 cttgaatgagttcagactgatatcgttggtggggagtctttataaaatattggcaaaaattctggcaaataggctgagacaggtcattgggagcgtggtg 228  Q
     |||||||||||  | |  || || |||||||||||  | || ||||| ||||| |||||||| ||||| ||| |||| ||||| |||||||| || |||    
T  104240 gttgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctagcaaacaggttgaggcaggttattgggagtgttgtg 104339  T
Q  229 tcggatgctcaatctgtgtttgtaaaagacaggcaaattcttgatggtattctgatcgctaatgaggtggttgatgaggc 308  Q
    || ||  |||| ||||  ||||| || || || |||||||||||||||||  |||| || ||||||||||||||||||||    
T  104340 tctgaaactcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgattgcgaatgaggtggttgatgaggc 104419  T

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Target: scaffold0131 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 341
Target Start/End: Original strand, 3091 - 3167
Alignment:
Q  265 attcttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaatccaagaaggatctgttattgtttaa 341  Q
    ||||| ||||||||  |||| |||||||||||||| |||||||||||   ||| ||||||||||| || ||||||||    
T  3091 attctcgatggtatattgatagctaatgaggtggtggatgaggctcgccgatctaagaaggatcttttgttgtttaa 3167  T

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Target: scaffold0112 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 14202 - 14249
Alignment:
Q  268 cttgatggtattctgatcgctaatgaggtggttgatgaggctcgtaaa 315  Q
    |||||||||||||| || || |||||||| ||||||||||||||||||    
T  14202 cttgatggtattcttatagcaaatgaggttgttgatgaggctcgtaaa 14249  T

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Target: scaffold0074 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 39983 - 39939
Alignment:
Q  265 attcttgatggtattctgatcgctaatgaggtggttgatgaggct 309  Q
    |||||||||||||| || || |||||||||| |||||||||||||    
T  39983 attcttgatggtatccttattgctaatgaggcggttgatgaggct 39939  T

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