View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15311_high_1 (Length: 753)

Name: NF15311_high_1
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15311_high_1
NF15311_high_1
[»] chr7 (3 HSPs)
chr7 (325-739)||(27776360-27776790)
chr7 (16-219)||(27776866-27777069)
chr7 (83-147)||(19741093-19741157)
[»] chr5 (2 HSPs)
chr5 (96-147)||(41218921-41218972)
chr5 (84-148)||(26472136-26472200)
[»] scaffold0164 (1 HSPs)
scaffold0164 (84-146)||(27146-27208)
[»] chr8 (1 HSPs)
chr8 (84-146)||(15193146-15193208)
[»] chr4 (3 HSPs)
chr4 (84-146)||(18254024-18254086)
chr4 (83-147)||(51764235-51764299)
chr4 (92-145)||(22643579-22643632)
[»] chr3 (2 HSPs)
chr3 (84-146)||(53978164-53978226)
chr3 (84-148)||(8836233-8836297)
[»] chr1 (1 HSPs)
chr1 (84-146)||(49641073-49641135)
[»] chr2 (2 HSPs)
chr2 (83-147)||(19481630-19481694)
chr2 (83-147)||(11337765-11337829)
[»] chr6 (1 HSPs)
chr6 (83-148)||(34309881-34309946)


Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 325 - 739
Target Start/End: Complemental strand, 27776790 - 27776360
Alignment:
Q  325 aaaatatatgaattgtcattcttataagagtgtaataggggatggatggcttaatctgtaacgccatatattggaatgaggaatgtttgtacaagtatta 424  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27776790 aaaatctatgaattgtcattcttataagagtgtaataggg-atggatggcttaatctgtaacgccgtatattggaatgaggaatgtttgtacaagtatta 27776692  T
Q  425 tttgcaaaatg--------------gaactggattagattgaggaaaatcaacttcatataatccatgagccgctctagctttgccaatcatcttc---g 507  Q
    |||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  27776691 tttgcaaaatgtttaaaaggaaatggaactggattagattgaggaaaatcaacttcatataatccatgagccgctctagctttgccaatcatcttcaagg 27776592  T
Q  508 tattcatttcctttacaagacaatgatcatcataaaaggaaacaaaacatggtgactgattagtaagcttaataactgaaataaggttgaaagaaaaatg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27776591 tattcatttcctttacaagacaatgatcatcataaaaggaaacaaaacatggtgactgattagtaagcttaataactgaaataaggttgaaagaaaaatg 27776492  T
Q  608 aggaacatatataacatcaaataaagtaatagtctttgtgaggtgcatggtgccccaaatactagttatgtcttgttggccattgggaaggtttatggga 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27776491 aggaacatatataacatcaaataaagtaatagtctttgtgaggtgcatggtgccccaaatactagttatgtcttgttggccattgggaaggtttatggga 27776392  T
Q  708 atgggtttaaagaggcgcacaacacagaagta 739  Q
    |||||||||||||||| || |||||| |||||    
T  27776391 atgggtttaaagaggcacataacacacaagta 27776360  T

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Target: chr7; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 27777069 - 27776866
Alignment:
Q  16 catcatgtgaaatagcataagcacaaaaagagataggaatatgataatgaaacattaaggtccttgacacattgagaatatgttgatacttcctttcaac 115  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  27777069 catcatgtgaaatagcataagaacaaaaagagataggaatctgatattgaaatattaaggtccttgacacattgagaatatgttgatgcttcctttcaac 27776970  T
Q  116 caccccattttgttggggtgtttcaacacaagaaagttaatgtaaaatacccttacttctgtaaaaaagactcaaacataaattcttcacaattgtcatc 215  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||| ||||||||||||||||||||| |||||||||||    
T  27776969 caccccattttgttggggtgtttcaacacaagaaagttaatgcaaaataccatttcttttgtaaaatagactcaaacataaattcttctcaattgtcatc 27776870  T
Q  216 agat 219  Q
    ||||    
T  27776869 agat 27776866  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 19741157 - 19741093
Alignment:
Q  83 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 147  Q
    |||||| ||||| ||||||| ||| |||||||| |||||||||||||| || || ||||||||||    
T  19741157 cacattaagaatgtgttgatgctttctttcaacaaccccattttgttgaggcgtctcaacacaag 19741093  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 41218921 - 41218972
Alignment:
Q  96 tgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 147  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  41218921 tgttgatgcttcctttcaaccaccccattttgttggggggtttcaacacaag 41218972  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 26472200 - 26472136
Alignment:
Q  84 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 148  Q
    ||||| ||||||||||||| ||| ||||||||    |||||||||||||| ||||||||||||||    
T  26472200 acattaagaatatgttgatgctttctttcaactctaccattttgttggggagtttcaacacaaga 26472136  T

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Target: scaffold0164 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 27146 - 27208
Alignment:
Q  84 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 146  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  27146 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 27208  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 15193208 - 15193146
Alignment:
Q  84 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 146  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  15193208 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 15193146  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 18254086 - 18254024
Alignment:
Q  84 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 146  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  18254086 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 18254024  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 51764299 - 51764235
Alignment:
Q  83 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 147  Q
    |||||||||||| ||||||| ||| |||||||| |||||||||||||| || || ||||||||||    
T  51764299 cacattgagaatgtgttgattctttctttcaacaaccccattttgttgaggcgtctcaacacaag 51764235  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 22643632 - 22643579
Alignment:
Q  92 aatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacaca 145  Q
    ||||||||||| ||| |||||||||  ||||||||||||||| |||||||||||    
T  22643632 aatatgttgatgctttctttcaaccctcccattttgttggggagtttcaacaca 22643579  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 53978226 - 53978164
Alignment:
Q  84 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 146  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  53978226 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 53978164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 8836297 - 8836233
Alignment:
Q  84 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 148  Q
    ||||| ||||||||||||| ||| ||||||||    |||||||||||||| ||||||||||||||    
T  8836297 acattaagaatatgttgatgctttctttcaactctaccattttgttggggagtttcaacacaaga 8836233  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 49641073 - 49641135
Alignment:
Q  84 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 146  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  49641073 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 49641135  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 19481694 - 19481630
Alignment:
Q  83 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 147  Q
    |||||||||||| ||||||| ||| |||||||| |||||||||||||| || || ||||||||||    
T  19481694 cacattgagaatgtgttgatgctttctttcaacaaccccattttgttgaggcgtctcaacacaag 19481630  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 11337829 - 11337765
Alignment:
Q  83 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 147  Q
    |||||||||||| ||||||| ||| ||||||||  ||||||||||||| || || ||||||||||    
T  11337829 cacattgagaatgtgttgatgctttctttcaacagccccattttgttgaggcgtctcaacacaag 11337765  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 34309946 - 34309881
Alignment:
Q  83 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 148  Q
    ||||||||| |||||||||| ||||||||| || |  ||||||||||| || || |||||||||||    
T  34309946 cacattgaggatatgttgatgcttcctttctacaataccattttgttgaggagtctcaacacaaga 34309881  T

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