View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15311_high_10 (Length: 432)
Name: NF15311_high_10
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 417
Target Start/End: Complemental strand, 54478108 - 54477699
Alignment:
| Q |
9 |
atgaagaagaaattaccataaaggtaggattctgattccgaacttgtttttgtttatttatgtttcatggaaactgcaataaaa---------atgcaat |
99 |
Q |
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| T |
54478108 |
atgaagaagaaattaccataaaggtaggattctgattccgaacttgtttttgtttatttatgtttcatggaaactgcaataaaatgaaatgaaatgcaat |
54478009 |
T |
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| Q |
100 |
gtggaatttctactcattcatattttccaaagaaaagttacacataattccttaatgatctctcggcattttagaagatcatgaagaagtatgaaaatgt |
199 |
Q |
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| T |
54478008 |
gtgtaatttctactcattcatattttccaaagaaaagttacacataattccttaatgatctctcggcattttacaagatcatgaagaagtatgaaaatgt |
54477909 |
T |
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| Q |
200 |
gacacttgtacttagaacctgtaaaacttcagnnnnnnnnagttgcattccaaacaaattcaacattcgacttttaaaagaatatatggttctgctcaga |
299 |
Q |
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| T |
54477908 |
gacacttgtacttagaacctgtaaaacttcagttttttttagttgcattccaaacaaattcaaaaaa-gaatat-------atatatggttctgctcaga |
54477817 |
T |
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| Q |
300 |
agcagaaatgctatttgtttaattcattttttaaatttgttttctcaaaaagactgcatcaagaggagcttcaacaacatccatgagagtagtggacaac |
399 |
Q |
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| T |
54477816 |
agcagaaatgctatttgtttaattcattttttaaatttgttttctcaaaaagactgcatcaagaggagcttcaacaacatccatgagagtagtggacaac |
54477717 |
T |
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| Q |
400 |
tcctatctttgcatttat |
417 |
Q |
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| T |
54477716 |
tcctatctttgcacttat |
54477699 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 18543045 - 18543109
Alignment:
| Q |
344 |
tcaaaaagactgcatcaagaggagcttcaacaacatccatgagagtagtggacaactcctatctt |
408 |
Q |
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| T |
18543045 |
tcaaaaagaatgcatcaagaggagcttcaagagaatacatgagagtggtggacaactcctatctt |
18543109 |
T |
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