View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15311_high_16 (Length: 379)
Name: NF15311_high_16
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 34330182 - 34330426
Alignment:
| Q |
1 |
ggatttgaagggtttttgatgttaactgagatagcacctgctgggtgtgataacaaaccttgttgactgttccagctagcttctgatgaagctgttggtg |
100 |
Q |
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| T |
34330182 |
ggatttgaagggtttttgatgttaactgagatagcacctgctgggtgtgataacaaaccttgttgactgttccagctagcttctgatgaagctgttggtg |
34330281 |
T |
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| Q |
101 |
ttgcagcatggaaagaacgagctcgatagtttctgatgtttgcataaccatccattgatgaagcagatgagtatcttgttgtatctggtataacaatgct |
200 |
Q |
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| T |
34330282 |
ttgcagcatggaaagaacgagctcgatagtttctgatgtttgcataaccatccattgatgaagcagatgagtatcttgttgtatctggtataacaatgct |
34330381 |
T |
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| Q |
201 |
ttctgtttcattgttaacattgatcactactggtgaaactctgct |
245 |
Q |
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| T |
34330382 |
ttctgtttcattgttaacattgatcactactggtgaaactctgct |
34330426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 313 - 377
Target Start/End: Original strand, 34330494 - 34330558
Alignment:
| Q |
313 |
ccttcgttgaagtatttgtgtgcgtcgaatatgctgagttctgaggtgggatcgtcgagtctgtg |
377 |
Q |
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| T |
34330494 |
ccttcgttgaagtatttgtgtgcgtcgaatatgctgagttctgaggtgggatcgtcgagtttgtg |
34330558 |
T |
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