View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15311_high_2 (Length: 725)
Name: NF15311_high_2
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 5 - 563
Target Start/End: Original strand, 52511230 - 52511795
Alignment:
| Q |
5 |
tgtcgaagaaaatgttatctcaatttctgtccaagtaacacaggtgtgaacaaataaggcataaattttttagccgctgttcaatttttaagaccaatat |
104 |
Q |
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| T |
52511230 |
tgtcgaaaaaaatgttatctcaatttctgtccaagtaacacaggtgtgaacaaataaggcataaattttttagccgctgttcaatttttaagagcaatat |
52511329 |
T |
|
| Q |
105 |
aaagagcttgaatctgcttgacacatcttggaggatataataccctagatacacatgagttgaataaaaatgtacgtatttacttggtaactatctatat |
204 |
Q |
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| T |
52511330 |
aaagagcttgaatctgcttgacacatcttggaggatataataccctagatacacatgagttgaataaaaatgtacgtatttacttggtaactatctatat |
52511429 |
T |
|
| Q |
205 |
aggaccatacatagcaatacttgctagaagtgtctgttgaatgtttacactata----cctgacattttggaagtcattttggtaatcgtgaatatgggc |
300 |
Q |
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| T |
52511430 |
aggaccttacatagcaatacttggtagaagtgtttgttgaatgtttacactatatatacctgacattttggaagtcattttggtaatcgtgaatattggc |
52511529 |
T |
|
| Q |
301 |
aatcttagtattgaaaaatggtatttctttcatacaaaatattgaaattcaataggtgctaactagtaaccaagcaaaatttagggttctggaatacctc |
400 |
Q |
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| T |
52511530 |
aatcttagtattgaaaaatggtttttctttcatacaaaatattgaaattcaataggtgctaactagtaaccgagcaaaatttagggttctggaatgcctc |
52511629 |
T |
|
| Q |
401 |
cagaccaaatatattctaagctaggagcctattaccattgcagtcactggtggaccagaaataagcattagcaagcctcaattcagttgtggtcacaaac |
500 |
Q |
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| T |
52511630 |
cagaccaaatatattctaagctaggagccgattaccattgcagtcactggtggaccagaaataagcattagcaagcctcaattcagttgtggtcacaaac |
52511729 |
T |
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| Q |
501 |
aagaaggactgaaaaggatgtagtacagtgaatataa---cagcagcagcaacagaagattaacat |
563 |
Q |
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| T |
52511730 |
aagaaggactgaaaaggatgtagtacagtgaatataacagcagcagcagcaacagaagattaacat |
52511795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 573 - 705
Target Start/End: Original strand, 52511836 - 52511968
Alignment:
| Q |
573 |
catgagtagtatacataccttctaagaatttggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagaccttta |
672 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52511836 |
catgagtagtatacataccttctaagaattgggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagaccttta |
52511935 |
T |
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| Q |
673 |
ttgtttggcacaccagttcctaaacaaacaggg |
705 |
Q |
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| T |
52511936 |
ttgtttggcacaccagttcctaaacaaacaggg |
52511968 |
T |
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