View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15311_high_26 (Length: 300)
Name: NF15311_high_26
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_high_26 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 5141636 - 5141833
Alignment:
| Q |
16 |
gtgcaatctcatatattaattaatactatgaaagagtttttaattgtaccatgattttaatccacttgggatggtttggtggtgttgacttaagactttg |
115 |
Q |
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| T |
5141636 |
gtgcaatctcatatattaattaatactatgaaagagtttttaattgtaccatgattttaatccacttgggatggtttggtggtgttgacttaagactttg |
5141735 |
T |
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| Q |
116 |
gagtatgctctttagcttcatnnnnnnnnntgacaattttatacattctttaattttaggatcgaactctgtaattttttaggccaattgagtgattaa |
214 |
Q |
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| T |
5141736 |
gagtatgctctttagcttcat-aaaaaaaatgacaattttatacattctttaattttaggatcgaactctgtaattttttaggccaattaaatgattaa |
5141833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 5178968 - 5179030
Alignment:
| Q |
152 |
ttttatacattctttaattttaggatcgaactctgtaattttttaggccaattgagtgattaa |
214 |
Q |
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| T |
5178968 |
ttttatacattctttaattttaggatcgagctctgtaattttttaggccaattgagtgattaa |
5179030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 5193539 - 5193602
Alignment:
| Q |
151 |
attttatacattctttaattttaggatcgaactctgtaattttttaggccaattgagtgattaa |
214 |
Q |
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| T |
5193539 |
attttataaattctttaattttaggatcgagctctgtaattttttaggccaattgagggattaa |
5193602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 4845746 - 4845683
Alignment:
| Q |
151 |
attttatacattctttaattttaggatcgaactctgtaattttttaggccaattgagtgattaa |
214 |
Q |
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| T |
4845746 |
attttataaattctttaattttaggatcgagctctgtaatttttttggccaattgagtaattaa |
4845683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 5154447 - 5154505
Alignment:
| Q |
151 |
attttatacattctttaattttaggatcgaactctgtaattttttaggccaattgagtg |
209 |
Q |
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| T |
5154447 |
atttcataaattctttaattttaggatcgacttatgtaattttttagacaaattgagtg |
5154505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 5170953 - 5170999
Alignment:
| Q |
151 |
attttatacattctttaattttaggatcgaactctgtaattttttag |
197 |
Q |
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| T |
5170953 |
atttcataaattctttaattttaggatcgacctatgtaattttttag |
5170999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 51714437 - 51714405
Alignment:
| Q |
93 |
ggtggtgttgacttaagactttggagtatgctc |
125 |
Q |
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| T |
51714437 |
ggtggtgttgactttagactttggagtatgctc |
51714405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 230335 - 230380
Alignment:
| Q |
77 |
ccacttgggatggtttggtggtgttgacttaagactttggagtatg |
122 |
Q |
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| T |
230335 |
ccacttgggctggcttggtggtgttgacttgagactttgaagtatg |
230380 |
T |
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