View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15311_high_3 (Length: 603)
Name: NF15311_high_3
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 21 - 601
Target Start/End: Original strand, 24692346 - 24692941
Alignment:
| Q |
21 |
agaacatcatagtctttctctaactgttttgtcttccacctagcccttctgttttgaaaccatatagcaatctgtcttggctgcaatccaagagctcttg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24692346 |
agaacatcatagtctttctctaactgttttgtcttccacctagcccttctgttttgaaaccatatagcaatttgtcttggctgcaatccaagagctcttg |
24692445 |
T |
|
| Q |
121 |
ctagctgcattttcctctcaggttcaagcttgtttcctaactcaaaactcttctcaagtgtcttcacttgttccatgttaagccttctcttcttctcccc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24692446 |
ctagctgcattttcctctcaggttcaagcttgtttcctaactcaaaactcttctcaagtgtcttcacttgttccatgttaagccttctcttcttctcccc |
24692545 |
T |
|
| Q |
221 |
taactgtgatccatcatcggataattcttcctcgacattcgcttcttctccaagttctatccctgaaaatgacatagatctctttcctaaaaaggatact |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24692546 |
taactgtgatccatcatcggataattcttcctcgacattcgcttcttctccaagctctatccctgaaaatgacatagatctctttcctaaaaaggacact |
24692645 |
T |
|
| Q |
321 |
cctcctcctgcatcaatatttaaaatatattattactttcatctcataaaaattaatattacattgctagatttaaataaaggtctgcgaccgtgatctg |
420 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
24692646 |
cctcctcctgcatcaatatttaaaatatgttattactttcatctcataaaaattaatattacattggtagatttaaataaaggtctgcgaccgcgatctg |
24692745 |
T |
|
| Q |
421 |
tgccacgacataataggttttaatgttgtggtaacaacaacgcaattgcgacttaggctgcatcggctgcat---------------aataatatttatg |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
24692746 |
tgccacgacataataggttttaatgttgtggtaacaacaacgcaattgcgacttaggctgcatcggctacatttaacgacaattctcaataatatttatg |
24692845 |
T |
|
| Q |
506 |
tgagttttctagagaaagaaagtaccatggtaatcttgaggtgcacatgaggttataattgagttgagtgaaggtggaggttgatgatgtccatct |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
24692846 |
tgagttttctagagaaagaaagtaccatggtaatcttgaggtgcacatgaggttataattgagttgagtgatggtggaggttgatgatgttcatct |
24692941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 9379112 - 9379037
Alignment:
| Q |
54 |
ttccacctagcccttctgttttgaaaccatatagcaatctgtcttggctgcaatccaagagctcttgctagctgca |
129 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||||| |||||||||||||||||||| |||| |||| ||||| |
|
|
| T |
9379112 |
ttccatctagctcttttgttttgaaaccatatagcaacttgtcttggctgcaatccaagctctctagctaactgca |
9379037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 5e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 17181871 - 17182168
Alignment:
| Q |
18 |
ttaagaacatcatagtctttctctaactgttttgtcttccacctagcccttctgttttgaaaccatatagcaatctgtcttggctgcaatccaagagctc |
117 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||||||| || |||||||| ||||||||||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
17181871 |
ttaagaacatcatagtctttttccaactgctttgtcttccatcttgcccttctattttgaaaccatatagcaacttgtctaggttgcaagttaagagctc |
17181970 |
T |
|
| Q |
118 |
ttgctagctgcattttcctctcaggttcaagcttgtttcctaactcaaaactcttctcaagtgtcttcacttgttccatgttaagccttctcttcttctc |
217 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| || || | ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
17181971 |
ttgcaagctgcattttcctctcaggctcaagcttattaccaagttcaaaactcttctcaagtgtcttcacttgttccatattaagcctcctcttcttctc |
17182070 |
T |
|
| Q |
218 |
ccctaactgtgatccatcatcggataattcttcctc---gacattcgcttcttctccaagttctatccc---tgaaaatgacatagatctctttccta |
309 |
Q |
| |
|
|| |||||||||||||| ||||| |||||||| | ||| ||||||||||||||||| ||||| ||||||||||||| ||||||| |||| |
|
|
| T |
17182071 |
tccagcttgtgatccatcatcagataaatcttcctcaggtatatttgcttcttctccaagttcaatccccgatgaaaatgacatacatctcttcccta |
17182168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 16762997 - 16763117
Alignment:
| Q |
58 |
acctagcccttctgttttgaaaccatatagcaatctgtcttggctgcaatccaagagctcttgctagctgcattttcctctcaggttcaagcttgtttcc |
157 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||| ||||| ||||| || |||| || || | |||||| |||||||||||||||||| | |
|
|
| T |
16762997 |
accttgcccttctgttttgaaaccatatagcaacttgtcttggttgcaaaccaagctcttttgcaagttgaactttcctatcaggttcaagcttgttttc |
16763096 |
T |
|
| Q |
158 |
taactcaaaactcttctcaag |
178 |
Q |
| |
|
|| |||||||||||| ||||| |
|
|
| T |
16763097 |
tacctcaaaactcttttcaag |
16763117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 3353658 - 3353833
Alignment:
| Q |
18 |
ttaagaacatcatagtctttctctaactgttttgtcttccacctagcccttctgttttgaaaccatatagcaatctgtcttggctgcaatccaagagctc |
117 |
Q |
| |
|
|||||||| ||||| |||||||| | || || || |||||||| || ||||| ||||| ||||||||||| | ||||| || || || || | |||| |
|
|
| T |
3353658 |
ttaagaacttcatattctttctcaagttgcttagttttccaccttgctcttctattttggaaccatatagctacttgtctaggttgtaaccccaaagctt |
3353757 |
T |
|
| Q |
118 |
ttgctagctgcattttcctctcaggttcaagcttgtttcctaactcaaaactcttctcaagtgtcttcacttgttc |
193 |
Q |
| |
|
| || | |||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
3353758 |
tagccaattgcattttcctctcaggttcaagcttgtttccaatctcaaaactcttctcaagtgctttcacttgttc |
3353833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 44593546 - 44593687
Alignment:
| Q |
13 |
catcattaagaacatcatagtctttctctaactgttttgtcttccacctagcccttctgttttgaaaccatatagcaatctgtcttggctgcaatccaag |
112 |
Q |
| |
|
||||||||||| |||||| || ||||| | |||||| ||||||||||| || | | |||||||||||| ||||||| || | ||||||||| ||||| |
|
|
| T |
44593546 |
catcattaagagaatcataatccttctcaagctgtttagtcttccaccttgcacgacggttttgaaaccaaatagcaacttgccgtggctgcaaaccaag |
44593645 |
T |
|
| Q |
113 |
agctcttgctagctgcattttcctctcaggttcaagcttgtt |
154 |
Q |
| |
|
|| | ||||||| |||||||||| |||||||| ||||| |
|
|
| T |
44593646 |
gtctttagctagcttggttttcctctctggttcaagtttgtt |
44593687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 42087505 - 42087569
Alignment:
| Q |
66 |
cttctgttttgaaaccatatagcaatctgtcttggctgcaatccaagagctcttgctagctgcat |
130 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||||||| |||||| ||||||| || ||||| |
|
|
| T |
42087505 |
cttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgcat |
42087569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 195
Target Start/End: Original strand, 2342796 - 2342925
Alignment:
| Q |
66 |
cttctgttttgaaaccatatagcaatctgtcttggctgcaatccaagagctcttgctagctgcattttcctctcaggttcaagcttgtttcctaactcaa |
165 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| |||||||| || | ||| | || || |||| ||| || || || ||||||||||| || || |||| |
|
|
| T |
2342796 |
cttctattctgaaaccatatagcaatttgtctaggctgcaaccctaaagccttagcaagttgcacttttctttctggatcaagcttgttcccaaattcaa |
2342895 |
T |
|
| Q |
166 |
aactcttctcaagtgtcttcacttgttcca |
195 |
Q |
| |
|
| ||||||||||| | || |||||| |||| |
|
|
| T |
2342896 |
agctcttctcaagggcctgcacttgatcca |
2342925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University