View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15311_high_31 (Length: 280)
Name: NF15311_high_31
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 20013401 - 20013616
Alignment:
| Q |
20 |
tttctctcttcaaataaaaccctagtttgataagctgttggtaaatggggcaatcggaagtctgagattcgggaacagacggagccggcggtggaggagt |
119 |
Q |
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| T |
20013401 |
tttctctcttcaaataaaaccctagtttgataagctgtttgtaaatggggcaatcggaagtc---------------gacggagacggcggtagaggaat |
20013485 |
T |
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| Q |
120 |
gtgtagggagtggtcatcggagacgtccgcga---ccgccgttttcgagggaacttttttatgtt---gcggcagagactgatcta---cgacggcggct |
210 |
Q |
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|||||||||||||||||||| || | | || | ||||||||||||||||||||||||||| ||||||||||||||| || || ||||||| |
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| T |
20013486 |
atgtagggagtggtcatcggaatcgccagagatttcgaccgttttcgagggaacttttttatgttgcggcggcagagactgatatatggcggcggcggcg |
20013585 |
T |
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| Q |
211 |
gttttgctccttcttttcccctttcccatgg |
241 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
20013586 |
gttttgctccttcttttcccctttcccatgg |
20013616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 24969003 - 24968897
Alignment:
| Q |
135 |
atcggagacgtccgcgaccgccgttttcgagggaacttttttatgttgcggcagagactgatctacgacgg---cggctgttttgctccttcttttcccc |
231 |
Q |
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| T |
24969003 |
atcggagacgtccgcgaccg---ttttcgagggaactttttgatgttgcggcagagactgatctacgacggcggcggctgttttgctccttcttttcccc |
24968907 |
T |
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| Q |
232 |
tttcccatgg |
241 |
Q |
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|||||||||| |
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| T |
24968906 |
tttcccatgg |
24968897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 25431694 - 25431800
Alignment:
| Q |
135 |
atcggagacgtccgcgaccgccgttttcgagggaacttttttatgttgcggcagagactgatctacga---cggcggctgttttgctccttcttttcccc |
231 |
Q |
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| T |
25431694 |
atcggagacgtccgcgaccg---ttttcgagggaactttttgatgttgcggcagagactgatctacgacggcggcggctgttttgctccttcttttcccc |
25431790 |
T |
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| Q |
232 |
tttcccatgg |
241 |
Q |
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|||||||||| |
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| T |
25431791 |
tttcccatgg |
25431800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 24969055 - 24968998
Alignment:
| Q |
20 |
tttctctcttcaaataaaaccctagtttgataagctgttggtaaatggggcaatcgga |
77 |
Q |
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| T |
24969055 |
tttctctcttcaaataaaaccctagtttgataagctgttggtaaatggggcaatcgga |
24968998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 25431642 - 25431699
Alignment:
| Q |
20 |
tttctctcttcaaataaaaccctagtttgataagctgttggtaaatggggcaatcgga |
77 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25431642 |
tttctctcttcaaataaaaccctagtttgataagctgttggtaaatggggcaatcgga |
25431699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 23899843 - 23899885
Alignment:
| Q |
39 |
ccctagtttgataagctgttggtaaatggggcaatcggaagtc |
81 |
Q |
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| T |
23899843 |
ccctagtttgataagctgttggtaaatggggcaatcggaagtc |
23899885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 31620849 - 31620901
Alignment:
| Q |
22 |
tctctcttcaaataaaaccctagtttgataagctgttggtaaatggggcaatc |
74 |
Q |
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|||||||||||||||||||| |||||| ||| |||||||||| ||||||||| |
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| T |
31620849 |
tctctcttcaaataaaacccccgtttgacaaggtgttggtaaacggggcaatc |
31620901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 23899886 - 23899929
Alignment:
| Q |
97 |
gacggagccggcggtggaggagtgtgtagggagtggtcatcgga |
140 |
Q |
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|||||||||| | |||||||||| |||||||||||||||||||| |
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| T |
23899886 |
gacggagccgactgtggaggagtatgtagggagtggtcatcgga |
23899929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 40507126 - 40507089
Alignment:
| Q |
109 |
ggtggaggagtgtgtagggagtggtcatcggagacgtc |
146 |
Q |
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| T |
40507126 |
ggtggaggagtgggaagggagtggtcatcggagacgtc |
40507089 |
T |
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