View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15311_high_4 (Length: 542)

Name: NF15311_high_4
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15311_high_4
NF15311_high_4
[»] chr5 (16 HSPs)
chr5 (1-525)||(3299672-3300204)
chr5 (1-525)||(3392565-3393097)
chr5 (205-515)||(1163333-1163646)
chr5 (300-515)||(1850093-1850293)
chr5 (205-510)||(40418449-40418758)
chr5 (205-508)||(39879988-39880297)
chr5 (205-508)||(38987873-38988180)
chr5 (54-173)||(1163164-1163288)
chr5 (205-508)||(39726592-39726906)
chr5 (119-209)||(1850346-1850444)
chr5 (430-498)||(39169033-39169101)
chr5 (13-62)||(39880491-39880540)
chr5 (126-207)||(39880327-39880405)
chr5 (126-207)||(40418782-40418860)
chr5 (442-484)||(39400042-39400084)
chr5 (126-179)||(38988229-38988282)
[»] chr4 (6 HSPs)
chr4 (425-510)||(25912122-25912207)
chr4 (205-349)||(44444395-44444543)
chr4 (250-345)||(25911951-25912046)
chr4 (20-61)||(25911657-25911698)
chr4 (435-495)||(44444614-44444674)
chr4 (126-162)||(25911785-25911821)


Alignment Details
Target: chr5 (Bit Score: 496; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 3300204 - 3299672
Alignment:
Q  1 tagccatgtttgagtgcaacacatggaagacaggaaagtaaatggaagggtgaggtgaaatg--------tactttatatgccgaatataattaatgaca 92  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        ||||||||||||||||||||||||||||||    
T  3300204 tagccatgtttgagtgcaacacatggaagacaggaaagtaaatgaaagggtgaggtgaaatggtgaaaggtactttatatgccgaatataattaatgaca 3300105  T
Q  93 tgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaactagttgttct 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300104 tgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaactagttgttct 3300005  T
Q  193 tgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgttta 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300004 tgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgttta 3299905  T
Q  293 agcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299904 agcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttc 3299805  T
Q  393 gatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagc 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299804 gatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagc 3299705  T
Q  493 aacaactctaccattctcctcttgggcataact 525  Q
    ||||||||||||||||||||||| |||||||||    
T  3299704 aacaactctaccattctcctcttcggcataact 3299672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 3393097 - 3392565
Alignment:
Q  1 tagccatgtttgagtgcaacacatggaagacaggaaagtaaatggaagggtgaggtgaaatg--------tactttatatgccgaatataattaatgaca 92  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        ||||||||||||||||||||||||||||||    
T  3393097 tagccatgtttgagtgcaacacatggaagacaggaaagtaaatgaaagggtgaggtgaaatggtgaaaggtactttatatgccgaatataattaatgaca 3392998  T
Q  93 tgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaactagttgttct 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392997 tgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaactagttgttct 3392898  T
Q  193 tgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgttta 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392897 tgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgttta 3392798  T
Q  293 agcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392797 agcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttc 3392698  T
Q  393 gatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagc 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392697 gatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagc 3392598  T
Q  493 aacaactctaccattctcctcttgggcataact 525  Q
    ||||||||||||||||||||||| |||||||||    
T  3392597 aacaactctaccattctcctcttcggcataact 3392565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 205 - 515
Target Start/End: Original strand, 1163333 - 1163646
Alignment:
Q  205 aaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtg 304  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1163333 aaatataaaaaagctaataaatgaaaagcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagta 1163432  T
Q  305 gatcatc---catcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggt 401  Q
    |||||||   ||||||||||||||||||||||| ||||||||||   |||||||||| ||| |  || | || |||||||||||| |||| |||||||||    
T  1163433 gatcatcatccatcaagcaaatcctccaatggaaaaaaaggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggt 1163532  T
Q  402 agattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactct 501  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  1163533 agattgctctttggtcgaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactct 1163632  T
Q  502 accattctcctctt 515  Q
    ||||||||||||||    
T  1163633 accattctcctctt 1163646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 300 - 515
Target Start/End: Complemental strand, 1850293 - 1850093
Alignment:
Q  300 aagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcg 399  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | || ||||||||||||||||| |||||||    
T  1850293 aagtagatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaaaggggatctgatgggtgggccagatggatggcagttggttggatttcg 1850194  T
Q  400 gtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaact 499  Q
    ||               ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  1850193 gt---------------cgaagaggagtttagggtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaacaggaataact 1850109  T
Q  500 ctaccattctcctctt 515  Q
    ||||||||||||||||    
T  1850108 ctaccattctcctctt 1850093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 205 - 510
Target Start/End: Complemental strand, 40418758 - 40418449
Alignment:
Q  205 aaatagaaaaaagctaataaatgaaaagcatcttccttg--ttttg--gttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgta 300  Q
    ||||||||| || ||||||||||||||||||||||||||  |||||  ||||||||||  |||||||||| || | ||||||| |||||||||||| |||    
T  40418758 aaatagaaagaacctaataaatgaaaagcatcttccttgatttttgttgttattggaacaaacaaaacattaacaaaagtgatttttgtttaagctagta 40418659  T
Q  301 agtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggattt-gatggttgtgtcaaatggatggcagttggttcgatttcg 399  Q
    | | |||||||| |||||||| ||||||||||||  |||||||||  ||  ||||||||  || ||     ||| |||  | ||  |||||| ||| |||    
T  40418658 actagatcatccgtcaagcaagtcctccaatggaacaaaaggtctggtag-gggggattacgaagggcccatcatatgtgtagcttttggtttgatctcg 40418560  T
Q  400 gtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaact 499  Q
    ||||  |||||||  || |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  40418559 gtaggctgctcttacgttgaagaggagtttagtgtcttgttgtagatcattgaagaagagttgataatcagattcccacttatcatgaagagcaacaact 40418460  T
Q  500 ctaccattctc 510  Q
    |||||||||||    
T  40418459 ctaccattctc 40418449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 205 - 508
Target Start/End: Complemental strand, 39880297 - 39879988
Alignment:
Q  205 aaatagaaaaaagctaataaatgaaaagcatcttccttgttt-------tggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagctt 297  Q
    ||||||||| || |||||||||||||||||||||||||| ||       |  |||||||||  || |||||||||| | ||||||| ||||||||||||     
T  39880297 aaatagaaagaacctaataaatgaaaagcatcttccttgattgttgttgttattattggaacaaa-aaaacatcaacaaaagtgatttttgtttaagcta 39880199  T
Q  298 gtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatt-tgatggttgtgtcaaatggatggcagttggttcgatt 396  Q
    |||| | |||||||| |||||||| |||||||||||| ||||||||||  ||  |||||||| ||| ||     ||| |||  | ||  |||||| |||     
T  39880198 gtaactagatcatccgtcaagcaagtcctccaatggaaaaaaaggtctggtag-gggggattctgaagggcccatcatatgtgtagcttttggtttgatc 39880100  T
Q  397 tcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaaca 496  Q
    |||||||  |||||||  |  ||||| ||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||  |||||||||    
T  39880099 tcggtaggctgctcttacgctgaagatgagtttagtgttttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaaca 39880000  T
Q  497 actctaccattc 508  Q
    ||||||||||||    
T  39879999 actctaccattc 39879988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 205 - 508
Target Start/End: Complemental strand, 38988180 - 38987873
Alignment:
Q  205 aaatagaaaaaagctaataaatgaaaagcatcttccttgttt----tggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgta 300  Q
    ||||||||| || |||||||||||| |||| |||||||| ||    | ||||||||||  ||||||||||||| | ||||||| |||||||||||| ||     
T  38988180 aaatagaaagaacctaataaatgaagagcagcttccttgattgttgttgttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtg 38988081  T
Q  301 agtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcgg 400  Q
    | | |||||||| |||||||| ||||||||||||| |||||||||  ||  ||||  |  || ||    |||| |||  | |  |||| || ||||||||    
T  38988080 actagatcatccgtcaagcaagtcctccaatggatcaaaaggtctggtaggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcgg 38987981  T
Q  401 tagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactc 500  Q
    |||  |||| ||   | |||||| |||| || ||||||||||||||| || ||||||||||||||||||||||||||||||||||  |||||||||||||    
T  38987980 taggctgctgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactc 38987881  T
Q  501 taccattc 508  Q
    ||||||||    
T  38987880 taccattc 38987873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 1163164 - 1163288
Alignment:
Q  54 ggtgaaatgtactttatatgccgaatataattaatgacatgcatggtttgggaagcac---------acataacttgttctaataaacataaatatcaaa 144  Q
    ||||||| | |||||||||||||||||||||    |||| ||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  1163164 ggtgaaaggaactttatatgccgaatataat----gacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatatcaaa 1163259  T
Q  145 cagaaattgcaaattgcaacagagtaagt 173  Q
    ||||||||||||||||||||| |||||||    
T  1163260 cagaaattgcaaattgcaacaaagtaagt 1163288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 205 - 508
Target Start/End: Complemental strand, 39726906 - 39726592
Alignment:
Q  205 aaatagaaaaaagctaataaatgaaaagcatcttccttgttt-------tggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagctt 297  Q
    ||||||||| || |||||||||||||||||||||||||| ||       |  |||||||||  ||||||||||||| | | ||||| ||||||||||||     
T  39726906 aaatagaaagaacctaataaatgaaaagcatcttccttgattgttgttgttattattggaacaaacaaaacatcaacaaaggtgatttttgtttaagcta 39726807  T
Q  298 gtaagtgg----atcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcg 393  Q
    |||| | |    ||||||| |||||||| ||||||||||||| |||||||||  ||  ||||  |  || ||    |||| |||  | |  |||| || |    
T  39726806 gtaactagctagatcatccgtcaagcaagtcctccaatggatcaaaaggtctgataggggggtctacgaagggcccgtcatatgtgtagtggttgtttgg 39726707  T
Q  394 atttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagca 493  Q
    ||||||||||  |||| ||   | |||||| |||| || ||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||    
T  39726706 atttcggtagggtgctgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagca 39726607  T
Q  494 acaactctaccattc 508  Q
    |||||||||||||||    
T  39726606 acaactctaccattc 39726592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 1850444 - 1850346
Alignment:
Q  119 ttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaac--------tagttgttcttgttatcggaataaata 209  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||        || ||||||||||||||||||||||||    
T  1850444 ttgttctaataaacataaatatcaaacagaaattgtaaattgcaacaaagtaagtgaaaagaaccttttaagtatttgttcttgttatcggaataaata 1850346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 430 - 498
Target Start/End: Complemental strand, 39169101 - 39169033
Alignment:
Q  430 agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaac 498  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||||    
T  39169101 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttaccctcaacaacaacaac 39169033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 39880540 - 39880491
Alignment:
Q  13 agtgcaacacatggaagacaggaaagtaaatggaagggtgaggtgaaatg 62  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  39880540 agtgcaacatatggaagacaggaaagtaaatggtagggtgaggtgaaatg 39880491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 39880405 - 39880327
Alignment:
Q  126 aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaactagttgttcttgttatcggaataaa 207  Q
    |||||||||||||||||||||||||||||||| |||| ||   ||||||||||| ||   |||||||||| || ||||||||    
T  39880405 aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaagcac---ttgttcttgtcattggaataaa 39880327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 40418860 - 40418782
Alignment:
Q  126 aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaactagttgttcttgttatcggaataaa 207  Q
    |||||||||||||||||||||||||||||||| |||| ||   ||||||||||| ||   |||||||||| || ||||||||    
T  40418860 aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaagcac---ttgttcttgtcattggaataaa 40418782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 484
Target Start/End: Complemental strand, 39400084 - 39400042
Alignment:
Q  442 tagatcttttaagaagagttgataatcagattcccacttatcc 484  Q
    |||||||| ||||||||||||||||||||||| ||||||||||    
T  39400084 tagatcttctaagaagagttgataatcagattgccacttatcc 39400042  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 38988282 - 38988229
Alignment:
Q  126 aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaag 179  Q
    |||||||||||||||||||||||||||||||| |||| ||   |||||||||||    
T  38988282 aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaag 38988229  T

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Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 425 - 510
Target Start/End: Original strand, 25912122 - 25912207
Alignment:
Q  425 agtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctc 510  Q
    ||||||| |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25912122 agtttagggtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctc 25912207  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 205 - 349
Target Start/End: Original strand, 44444395 - 44444543
Alignment:
Q  205 aaatagaaaaaagctaataaatgaaaagcatcttccttg----ttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgta 300  Q
    ||||||||| || ||||||||||||| |||| |||||||    |||| |||||||||   ||||||||||||| | ||||||| ||||||||||||||||    
T  44444395 aaatagaaataacctaataaatgaaaggcatattccttgattgttttcgttattggagtaaacaaaacatcaacaaaagtgatttttgtttaagcttgta 44444494  T
Q  301 agtggatcatccatcaagcaaatcctccaatggataaaaaggtcttcta 349  Q
    | | |||||||| |||||||| ||||| ||||||  ||||| |||||||    
T  44444495 actagatcatccgtcaagcaagtcctctaatggaacaaaagatcttcta 44444543  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 345
Target Start/End: Original strand, 25911951 - 25912046
Alignment:
Q  250 ttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtct 345  Q
    |||||||||  ||||||||||||| | ||||||| |||||||||||| |||| | |||||||| |||||||| ||||||||||||  |||||||||    
T  25911951 ttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtaactagatcatccgtcaagcaagtcctccaatggaacaaaaggtct 25912046  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 25911657 - 25911698
Alignment:
Q  20 cacatggaagacaggaaagtaaatggaagggtgaggtgaaat 61  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  25911657 cacatggaagacaggaaagtaaatggtagggtgaggtgaaat 25911698  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 495
Target Start/End: Original strand, 44444614 - 44444674
Alignment:
Q  435 cttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaac 495  Q
    |||||| ||||| ||||||||| |||| ||||||||||||| | |||||||||||| ||||    
T  44444614 cttgttttagatattttaagaaaagtttataatcagattccaatttatcctgaacaacaac 44444674  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 25911785 - 25911821
Alignment:
Q  126 aataaacataaatatcaaacagaaattgcaaattgca 162  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  25911785 aataaacataagtatcaaacagaaattgcaaactgca 25911821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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