View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15311_high_6 (Length: 505)
Name: NF15311_high_6
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 20 - 461
Target Start/End: Complemental strand, 40749979 - 40749538
Alignment:
| Q |
20 |
cttgagatgatatcaatccatgggccaaactagtttgtgtgttcatcatattggactcttcattctggaaatttagagttgtaggagatgagtgtcttgc |
119 |
Q |
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| T |
40749979 |
cttgagatgatatcaatccatgggccaaactagtttgtgtgttcatcatattggactcttcattctggaaatttagagttgtaggagatgagtgtcttgc |
40749880 |
T |
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| Q |
120 |
actttctacggctaatgcgtcgcagaaagctctgtgtgtaataaagctatccttcctgtgaaataaaatgtaccattagaaacctaatcatttacactat |
219 |
Q |
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| T |
40749879 |
actttctacggctaatgcgtcgcagaaagctctgtgtgtaataaagctatccttcctgtgaaataaaatgtaccattagaaacctaatcatttacactat |
40749780 |
T |
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| Q |
220 |
gcagtagtactagatcattgtcttaatttgtgaataattaaattatgaggaagtatgcattaaattcatacataatgcaaatgagaagtaattgaaaaga |
319 |
Q |
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| T |
40749779 |
gcagtagtactagatcattgtcttaatttgtgaataattaaattatgaggaagtatgcattaaattcatacataatgcaaatgagaagtaattgaaaaga |
40749680 |
T |
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| Q |
320 |
aaaacagttttttcatccacatcaaaaacaataaattttcagaaacttctttatttataaaaaatcagtatgaaggaattgaatgtttaaatttgcatga |
419 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40749679 |
aaaacagttttttcatccacatcaaaaacaagaaattttcagaaacttctttatttataaaaaatcagtatgaaggaattgaatgtttaaatttgcatga |
40749580 |
T |
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| Q |
420 |
ctttggtctttgaaaccaaagtcacctaaattttttgatact |
461 |
Q |
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| T |
40749579 |
ctttggtctttgaaaccaaagtcacctaaatttttttatact |
40749538 |
T |
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