View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15311_high_7 (Length: 482)
Name: NF15311_high_7
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 3 - 478
Target Start/End: Complemental strand, 35428903 - 35428431
Alignment:
| Q |
3 |
gatgagtttacacccggtgatcacacctgttcaatattttgagatttccttcgatcaggaaagtattaatttttgaaatatatatacacggaaagattgg |
102 |
Q |
| |
|
|||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35428903 |
gatgagattacatccggtcatcacacctcttcaatattttgagatttccttcgatcaggaaagtattaatttttgaaatatatatacacggaaagattgg |
35428804 |
T |
|
| Q |
103 |
agaaaaataatgatgagaaagataccaaaattatacttatatctttttctataaatatcctt-gatggaagattattttagctctataattcggtgcaag |
201 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
35428803 |
agaaaaataataatgagaaagataccaaaattatacttatatctttttctacaaatatcctttgatggaaaattattttagctctataattcggcgcaag |
35428704 |
T |
|
| Q |
202 |
atcttgaacaaaaagtatggaaaaattgaggaaaatttaaactatttcaagatacatctattttgtttcgaggattctcccacaaaattaccatcagaaa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35428703 |
atcttgaacaaaaagtatggaaaaattgaggaaaatttaaactatttcaagatacatctattttgtttcgaggattctcccacaaaattaccaacagaaa |
35428604 |
T |
|
| Q |
302 |
attatttgtttaaaaataaattaattgtgacccattgtgtgnnnnnnnagataaactaatgagacaatttcacctctagctcttcatggaatgtcaatgg |
401 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35428603 |
attatttctttaaaaagaaattaattgtgacccattgtgtgtttttttagataaactaatgagacaatttcacct----ctcttcatggaatgtcaatgg |
35428508 |
T |
|
| Q |
402 |
tcataataggtttggtttgattctcatttaggtgtcgtttttaattcacatgattatagaagtattttttcatttca |
478 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35428507 |
tcataataggtttggtttggttctcatttaggtgtcgtttttaattcacatgattatagaagtattttttcatttca |
35428431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 3 - 461
Target Start/End: Complemental strand, 35419770 - 35419314
Alignment:
| Q |
3 |
gatgagtttacacccggtgatcacacctgttcaatattttgagatttccttcgatcaggaaagtattaatttttgaaatatatatacacggaaagattgg |
102 |
Q |
| |
|
|||||| ||||| ||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
35419770 |
gatgagattacatccggtcatcacacctcttcaatattttgagatttccttctatcagggaagtattaattattgaaatatatatacacggaaaggttgg |
35419671 |
T |
|
| Q |
103 |
agaaaaataatgatgagaaagataccaaaattatacttatatctttttctataaatatccttgatggaagattattttagctctataattcggtgcaaga |
202 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| ||||||||||||| || |||||| |
|
|
| T |
35419670 |
agaaaaataataatgagacagataccaaaattatacttatacctttttctacaaatatccttgatggcagattattctagctctataatttggcgcaaga |
35419571 |
T |
|
| Q |
203 |
tcttgaacaaaaagtatggaaaaattgaggaaaatttaaactatttcaagatacatctattttgtttcgaggattctcc-cacaaaattaccatcagaaa |
301 |
Q |
| |
|
||||| | |||| ||||||||||| ||||||||||| ||||||||| |||||| |||||||||||||||||| |||||| ||||||||||||| | ||| |
|
|
| T |
35419570 |
tcttg-ataaaatgtatggaaaaactgaggaaaattaaaactattttaagatagatctattttgtttcgaggtttctccacacaaaattaccaataaaaa |
35419472 |
T |
|
| Q |
302 |
attatttgtttaaaaataaattaattgtgacccat--tgtgtgnnnnnnnagataaactaatgagacaatttcacctctagctcttcatggaatgtcaat |
399 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||| | | ||| |||| |||||||||||||| | ||||||||||||||||| |
|
|
| T |
35419471 |
attatttgtttaaaaataaatcaattgtgacccattgtgtgtgattttttatacaaaataattagacaatttcacct----cacttcatggaatgtcaat |
35419376 |
T |
|
| Q |
400 |
ggtcataataggtttggtttgattctcatttaggtgtcgtttttaattcacatgattataga |
461 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35419375 |
ggtcaaaataacattggtttgattctcatttaggtgtcgtttttaattcacatgattctaga |
35419314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 456
Target Start/End: Complemental strand, 16436406 - 16436312
Alignment:
| Q |
358 |
taatgagacaatttcacctctagctcttcatggaatgtcaatggtcataataggtttggtttgattctcatttaggtgtcgtttttaattcacatgatt |
456 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||||| |||||| | ||||| ||||||| |||| ||||||||| || |||||||| ||||||| |
|
|
| T |
16436406 |
taatgagacaatttcac----acctctttatggaatgtcattggtcaaagtaggtatggtttgcttcttctttaggtgtggtatttaattcgcatgatt |
16436312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University