View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15311_low_10 (Length: 444)
Name: NF15311_low_10
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_low_10 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 23 - 444
Target Start/End: Complemental strand, 14727684 - 14727263
Alignment:
| Q |
23 |
gtcggacaagataatgtctctggccttttcctatccagacgattccgctttttagatctgaaaataaaaaataagggagcatattcttgataacagaatt |
122 |
Q |
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| T |
14727684 |
gtcggactagattatatctctggccttttcctctccagaagattccgctttatacatatgaaaataaaaaataaggcagcatattcttgataacagaatt |
14727585 |
T |
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| Q |
123 |
aagaaaagattnnnnnnnntcaagaaagaatcaattatgaatttactagaatcttccgccacaaatggtaaaatgaaatacaatagttcagtcaaatcag |
222 |
Q |
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| T |
14727584 |
aagaaaagattaaaaaaaatcaagaaagaatcaattatgaatttactagaatcttccgccacaaatggtaaaatgaaatacaatagttcagtcaaatcag |
14727485 |
T |
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| Q |
223 |
tccaagaaggatacaacccaaatgaaaggtgtgtttaaaggattgcaaaagcagggcagagcttacaatcatttctaatgcaggagactgaactggtttt |
322 |
Q |
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| T |
14727484 |
tccaggaaggatacaacccaaatgaaaggtgtgtttaaaggattgcaaaagcagggcagagcttacaatcatttctaatgcaggagactgaactggtttt |
14727385 |
T |
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| Q |
323 |
ggcaatgcaacttcatgaaatggaagaaaagaagtttgatctctgtcatcttccccatttgaatcaatgataacattttgacaggacataccagtaattt |
422 |
Q |
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| T |
14727384 |
ggcaatgcaacttcatgaaatggaagaaaagaagtttgatctctgtcatcttccccatttgaatcaatgataacattttgacaggacataccagtaactt |
14727285 |
T |
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| Q |
423 |
tttcattttccatgttgggagt |
444 |
Q |
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| T |
14727284 |
tctcattttccatgttgggagt |
14727263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 14727243 - 14727167
Alignment:
| Q |
368 |
tcatcttccccatttgaatcaatgataacattttgacaggacataccagtaattttttcattttccatgttgggagt |
444 |
Q |
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| T |
14727243 |
tcatcttcctcatctgaatcgatgataacattttgacaggacaaaccagtaactttttcattttccatgttgggagt |
14727167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 444
Target Start/End: Complemental strand, 14727056 - 14726969
Alignment:
| Q |
357 |
tttgatctctgtcatcttccccatttgaatcaatgataacattttgacaggacataccagtaattttttcattttccatgttgggagt |
444 |
Q |
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| T |
14727056 |
tttgatccctatcatcttcctcatttgaatcaatggtaacattttcataggacataccagcagctttttcactttcaatgtagggagt |
14726969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 13956509 - 13956552
Alignment:
| Q |
269 |
aaaagcagggcagagcttacaatcatttctaatgcaggagactg |
312 |
Q |
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| T |
13956509 |
aaaagcagggcaaagcttacaatcatttttaatgcaggagactg |
13956552 |
T |
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