View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15311_low_12 (Length: 433)

Name: NF15311_low_12
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15311_low_12
NF15311_low_12
[»] chr6 (20 HSPs)
chr6 (19-405)||(32055741-32056125)
chr6 (178-376)||(15035805-15036005)
chr6 (230-380)||(31234805-31234954)
chr6 (230-372)||(31243942-31244083)
chr6 (337-384)||(30915383-30915430)
chr6 (339-380)||(57690-57731)
chr6 (339-380)||(628116-628157)
chr6 (339-380)||(2618357-2618398)
chr6 (290-380)||(3748589-3748680)
chr6 (339-380)||(12614737-12614778)
chr6 (296-380)||(1327554-1327636)
chr6 (338-380)||(31861002-31861044)
chr6 (339-380)||(21946109-21946150)
chr6 (339-379)||(6360762-6360802)
chr6 (338-380)||(1093061-1093103)
chr6 (339-380)||(6754208-6754249)
chr6 (339-368)||(7525199-7525228)
chr6 (339-380)||(14893438-14893479)
chr6 (339-368)||(29149405-29149434)
chr6 (339-380)||(29401142-29401183)
[»] chr2 (26 HSPs)
chr2 (138-380)||(12072295-12072541)
chr2 (292-380)||(36059926-36060015)
chr2 (337-380)||(39081398-39081441)
chr2 (338-380)||(15457501-15457543)
chr2 (339-380)||(19367440-19367481)
chr2 (337-380)||(1418909-1418952)
chr2 (338-380)||(18916075-18916117)
chr2 (338-372)||(21747259-21747293)
chr2 (339-380)||(2063807-2063848)
chr2 (339-380)||(6530661-6530702)
chr2 (339-380)||(13020425-13020466)
chr2 (339-380)||(18172961-18173002)
chr2 (339-380)||(26151768-26151809)
chr2 (337-378)||(27302551-27302592)
chr2 (337-380)||(38599402-38599445)
chr2 (294-380)||(33280303-33280388)
chr2 (338-380)||(38985730-38985772)
chr2 (339-380)||(4855995-4856036)
chr2 (339-380)||(7993634-7993675)
chr2 (339-380)||(18676332-18676373)
chr2 (339-380)||(25222325-25222366)
chr2 (339-368)||(41096571-41096600)
chr2 (339-380)||(42411579-42411620)
chr2 (339-368)||(45042391-45042420)
chr2 (339-368)||(45618979-45619008)
chr2 (338-370)||(18482538-18482570)
[»] chr3 (28 HSPs)
chr3 (149-368)||(4207387-4207608)
chr3 (113-368)||(35202751-35203009)
chr3 (285-380)||(13401406-13401502)
chr3 (276-405)||(21660434-21660560)
chr3 (337-380)||(7767063-7767106)
chr3 (337-380)||(42009283-42009326)
chr3 (337-380)||(46904742-46904785)
chr3 (339-380)||(51939577-51939618)
chr3 (292-386)||(54430506-54430601)
chr3 (337-380)||(27303187-27303230)
chr3 (337-380)||(36538207-36538250)
chr3 (337-380)||(50677335-50677378)
chr3 (339-377)||(18408193-18408231)
chr3 (339-380)||(28132756-28132797)
chr3 (339-380)||(41707076-41707117)
chr3 (339-380)||(52655144-52655185)
chr3 (338-386)||(40152145-40152193)
chr3 (338-385)||(21596336-21596383)
chr3 (337-380)||(43905864-43905907)
chr3 (338-380)||(1649852-1649894)
chr3 (287-386)||(19965895-19965995)
chr3 (338-380)||(48627050-48627092)
chr3 (339-368)||(8364174-8364203)
chr3 (339-380)||(21784805-21784846)
chr3 (339-368)||(24252622-24252651)
chr3 (339-380)||(25599107-25599148)
chr3 (339-380)||(29387775-29387816)
chr3 (339-368)||(46791730-46791759)
[»] chr7 (20 HSPs)
chr7 (244-372)||(2445805-2445930)
chr7 (285-380)||(40738012-40738108)
chr7 (337-380)||(26633363-26633406)
chr7 (285-380)||(9479074-9479170)
chr7 (338-380)||(26282563-26282605)
chr7 (338-380)||(40001717-40001759)
chr7 (336-386)||(30739122-30739172)
chr7 (339-380)||(4099970-4100011)
chr7 (339-380)||(7636347-7636388)
chr7 (339-380)||(18895418-18895459)
chr7 (339-380)||(33910066-33910107)
chr7 (337-373)||(36438379-36438415)
chr7 (339-374)||(8358321-8358356)
chr7 (340-386)||(42312012-42312058)
chr7 (339-380)||(773905-773946)
chr7 (339-368)||(11672588-11672617)
chr7 (339-380)||(18015603-18015644)
chr7 (339-380)||(44894050-44894091)
chr7 (339-380)||(46221724-46221765)
chr7 (338-386)||(44876170-44876218)
[»] chr5 (21 HSPs)
chr5 (247-380)||(524870-525001)
chr5 (138-380)||(37029053-37029294)
chr5 (339-380)||(19099335-19099376)
chr5 (337-380)||(138144-138187)
chr5 (338-380)||(43511619-43511661)
chr5 (338-379)||(931381-931422)
chr5 (339-380)||(29156192-29156233)
chr5 (327-380)||(13423852-13423907)
chr5 (341-380)||(7390421-7390460)
chr5 (337-371)||(5829385-5829419)
chr5 (338-380)||(17513957-17513999)
chr5 (338-380)||(20975986-20976028)
chr5 (338-380)||(42291902-42291944)
chr5 (339-380)||(13656212-13656253)
chr5 (340-380)||(33281677-33281717)
chr5 (339-374)||(13474632-13474667)
chr5 (338-380)||(10591294-10591336)
chr5 (339-380)||(12661311-12661352)
chr5 (339-380)||(18873459-18873500)
chr5 (113-177)||(525035-525104)
chr5 (338-386)||(40956314-40956362)
[»] chr4 (19 HSPs)
chr4 (285-386)||(43154803-43154905)
chr4 (339-380)||(45172666-45172707)
chr4 (337-380)||(35654001-35654044)
chr4 (339-386)||(53011714-53011761)
chr4 (339-380)||(19661381-19661422)
chr4 (339-380)||(23256596-23256637)
chr4 (339-380)||(23426187-23426228)
chr4 (339-380)||(32130811-32130852)
chr4 (338-386)||(5545330-5545378)
chr4 (336-380)||(21791568-21791612)
chr4 (337-380)||(10575544-10575587)
chr4 (337-380)||(24449126-24449169)
chr4 (285-377)||(27632345-27632438)
chr4 (338-380)||(34982225-34982267)
chr4 (338-380)||(55134209-55134251)
chr4 (339-380)||(16072596-16072637)
chr4 (339-380)||(28463609-28463650)
chr4 (339-368)||(41038252-41038281)
chr4 (339-380)||(44478041-44478082)
[»] chr8 (23 HSPs)
chr8 (183-350)||(7773418-7773586)
chr8 (338-380)||(12531560-12531602)
chr8 (338-380)||(34523972-34524014)
chr8 (339-380)||(3471602-3471643)
chr8 (338-386)||(30915303-30915351)
chr8 (338-380)||(5971777-5971819)
chr8 (249-350)||(7790126-7790226)
chr8 (249-350)||(7810712-7810812)
chr8 (339-376)||(18420634-18420671)
chr8 (339-372)||(27074576-27074609)
chr8 (339-380)||(42951790-42951831)
chr8 (339-380)||(43926344-43926385)
chr8 (292-368)||(32098211-32098288)
chr8 (337-380)||(35874926-35874969)
chr8 (339-373)||(1004060-1004094)
chr8 (338-380)||(5869343-5869385)
chr8 (338-368)||(23567307-23567337)
chr8 (339-380)||(3628768-3628809)
chr8 (339-368)||(7858087-7858116)
chr8 (339-380)||(13585301-13585342)
chr8 (339-368)||(18112118-18112147)
chr8 (337-378)||(42076108-42076149)
chr8 (339-380)||(43968091-43968132)
[»] chr1 (24 HSPs)
chr1 (339-380)||(12884158-12884199)
chr1 (338-380)||(5560484-5560526)
chr1 (338-380)||(12971407-12971449)
chr1 (292-405)||(32810349-32810459)
chr1 (292-386)||(15441244-15441339)
chr1 (339-380)||(18127958-18127999)
chr1 (337-380)||(44836742-44836785)
chr1 (338-380)||(27703550-27703592)
chr1 (343-380)||(14084722-14084759)
chr1 (339-380)||(25930606-25930647)
chr1 (339-380)||(33124651-33124692)
chr1 (339-380)||(48722391-48722432)
chr1 (339-380)||(51110122-51110163)
chr1 (337-373)||(50371134-50371170)
chr1 (337-380)||(17674375-17674418)
chr1 (338-380)||(30004928-30004970)
chr1 (339-368)||(9-38)
chr1 (339-380)||(6150723-6150764)
chr1 (339-368)||(10109722-10109751)
chr1 (339-380)||(13120887-13120928)
chr1 (339-380)||(28885692-28885733)
chr1 (339-380)||(30899658-30899699)
chr1 (339-380)||(50552497-50552538)
chr1 (285-358)||(31369432-31369506)
[»] scaffold0482 (1 HSPs)
scaffold0482 (249-350)||(1687-1787)
[»] scaffold0126 (1 HSPs)
scaffold0126 (339-380)||(16712-16753)
[»] scaffold0181 (1 HSPs)
scaffold0181 (339-380)||(17153-17194)


Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 405
Target Start/End: Original strand, 32055741 - 32056125
Alignment:
Q  19 aggtcagtaatgcctttatattttgtgtgactatcaataaccagacccgttcttgagggg-tgcaaacagttcaatcgaattggaccatcaataacaata 117  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  32055741 aggtcagtaatgcctctatattttgtgcgactatcaataaccagatccgttcttgagggggtgcaaacagttcaaccgaattggaccatcaataacaata 32055840  T
Q  118 cccaccccataatcaaagggaaaaaacatgctcttgtttcttctttcctccaacaacaacactgctttctt--tttctaaacctctctcatgttccaccc 215  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||| ||    
T  32055841 cccaccccacaatcaaagggaaaaaacatgctcttgtttcttctttcctccaacaacaacactgcttctttcttttctaaacctctctcatgttccatcc 32055940  T
Q  216 cgacctccatcttgcagccgctcgcctccacacaccggtaaccaccacctattcaactttcatctatcctctaaattctagttctcctttttggacaaaa 315  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||| |||| |    
T  32055941 cgacctccatcttgcagccgcgcgcctccacacacgggtaaccaccacctattcaacatccatctatcctctaaactctagttctcatttttgaacaaga 32056040  T
Q  316 attcaatgttaatcaaaccattcaatttgtataatcacttaatcagtcaatttaaaaagctatttaattaataatcataataatcctttc 405  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||    
T  32056041 attcaatgtt-atcaaaccatccaa-ttgtataatcacttaatcactcaatttaaaaagctatttaat---taatcataataatcctttc 32056125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 178 - 376
Target Start/End: Complemental strand, 15036005 - 15035805
Alignment:
Q  178 actgctttctttttctaaacctctctcatgttccaccccgacctccatcttgcagccgctcgcctccaca--caccggtaaccaccacctattcaacttt 275  Q
    ||||||||| | |||| ||||||||||  |||||   |||||||||||||  ||||||  | || |||||  |||| |||||||||||| || |||| ||    
T  15036005 actgctttcatcttctcaacctctctcgcgttcccttccgacctccatctctcagccgtccaccgccacatgcacctgtaaccaccaccaatccaacatt 15035906  T
Q  276 catctatcctctaaattctagttctcctttttggacaaaaattcaatgttaatcaaaccattcaa-tttgtataatcacttaatcagtcaatttaaaaag 374  Q
    |||||||||| || | | |||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||||| |||| |||||||||| |||||    
T  15035905 catctatcctatagactttagttctcctttttggacaagaattcaatgct-atcaaaccattcaattttgtataatcatttaaccagtcaatttgaaaag 15035807  T
Q  375 ct 376  Q
    ||    
T  15035806 ct 15035805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 230 - 380
Target Start/End: Original strand, 31234805 - 31234954
Alignment:
Q  230 cagccgctcgcctccacacaccggtaaccaccacctattcaactttcatctatcctctaaattctagttctcctttttggacaaaaattcaatgttaatc 329  Q
    ||||||| |||| |||||||| ||||||||||||  || |||| | ||| |||||| || | ||||||||| |||||| ||||| ||||||||| || ||    
T  31234805 cagccgcgcgccgccacacactggtaaccaccacaaatccaacatacatttatcctttagactctagttctactttttagacaagaattcaatgcta-tc 31234903  T
Q  330 aaaccattcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  31234904 aaaccatccaatttgtataatcacttaatcaatcaatttgaaaagctattt 31234954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 230 - 372
Target Start/End: Original strand, 31243942 - 31244083
Alignment:
Q  230 cagccgctcgcctccacacaccggtaaccaccacctattcaactttcatctatcctctaaattctagttctcctttttggacaaaaattcaatgttaatc 329  Q
    ||||||| |||| |||||||| ||||||||||||  || |||| | ||| |||||| || | ||||||||| |||||| ||||| ||||||||| | |||    
T  31243942 cagccgcgcgccgccacacactggtaaccaccacaaatccaacatacatttatcctttagactctagttctactttttagacaagaattcaatgct-atc 31244040  T
Q  330 aaaccattcaatttgtataatcacttaatcagtcaatttaaaa 372  Q
    ||||||| ||||||||||||||||||||||| |||||| ||||    
T  31244041 aaaccatccaatttgtataatcacttaatcaatcaattgaaaa 31244083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 30915430 - 30915383
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctatttaatt 384  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||    
T  30915430 tcaatttgtataattacttaatcagtcaatttgaaaagctatttaatt 30915383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 57690 - 57731
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  57690 aatttgtataatcacttaatcagtcaatttagaaagctattt 57731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 628157 - 628116
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  628157 aatttgtataatcacttaatcagtcaatttgaaaagctattt 628116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 2618357 - 2618398
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  2618357 aatttgtataatcacttaatcagtcaatttgaaaagctattt 2618398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 380
Target Start/End: Complemental strand, 3748680 - 3748589
Alignment:
Q  290 attctagttctcctttttggacaaaaattcaatgttaatcaaaccat--tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||| ||||||||||| |||||  ||| || |||||||    |||||||||||||||||||||||| ||||||| |||||||||||    
T  3748680 attctagttctactttttggacataaatttgatgcta-tcaaaccgccatcaatttgtataatcacttaatcaatcaatttgaaaagctattt 3748589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 12614778 - 12614737
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  12614778 aatttgtataatcacttaatcagtcaatttgaaaagctattt 12614737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 380
Target Start/End: Original strand, 1327554 - 1327636
Alignment:
Q  296 gttctcctttttggacaaaaattcaatgttaatcaaaccattcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||| ||||||||| || |||  | || ||||||||||||||||||||||| |||||||| ||| ||||||    
T  1327554 gttctcctttttggacaataattcaatgcta-tcattc-atccaatttgtataatcacttaatcaatcaatttagaaaactattt 1327636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 31861002 - 31861044
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  31861002 caatttgtataattacttaatcagtcaatttgaaaagctattt 31861044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 21946109 - 21946150
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  21946109 aatttgtataatcacttaatcagtctatttgaaaagctattt 21946150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 6360762 - 6360802
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctatt 379  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  6360762 aatttgtataatcacttaatcagtcaatttgaaaagttatt 6360802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 1093103 - 1093061
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||    
T  1093103 caattggtataatgactaaatcagtcaatttaaaaagctattt 1093061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 6754208 - 6754249
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||| |||||||||||||||||||  ||||||||||    
T  6754208 aatttgtatagtcacttaatcagtcaatttggaaagctattt 6754249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Complemental strand, 7525228 - 7525199
Alignment:
Q  339 aatttgtataatcacttaatcagtcaattt 368  Q
    ||||||||||||||||||||||||||||||    
T  7525228 aatttgtataatcacttaatcagtcaattt 7525199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 14893479 - 14893438
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||| ||||||||||||||||| |||| ||||||    
T  14893479 aatttgtataattacttaatcagtcaatttgaaaaactattt 14893438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Original strand, 29149405 - 29149434
Alignment:
Q  339 aatttgtataatcacttaatcagtcaattt 368  Q
    ||||||||||||||||||||||||||||||    
T  29149405 aatttgtataatcacttaatcagtcaattt 29149434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 29401142 - 29401183
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||| ||||||||||||||||||||||||| ||||| |||||    
T  29401142 aattagtataatcacttaatcagtcaatttgaaaagttattt 29401183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 138 - 380
Target Start/End: Original strand, 12072295 - 12072541
Alignment:
Q  138 aaaaaacatgctcttgtttcttctttcctccaacaacaacactgctttctttt---tctaaacctctctcatgttccaccccgacctccatcttgcagcc 234  Q
    |||||||||| ||||||||||| |||| |||||||||||| || |||| || |   ||| || ||||| | ||||||  ||||||||||||||  |||||    
T  12072295 aaaaaacatgttcttgtttcttatttcttccaacaacaacgctacttttttctccttctcaaactctcgcgtgttccctcccgacctccatctctcagcc 12072394  T
Q  235 --gctcgcctccacacaccggtaaccaccacctattcaactttcatctatcctctaaattctagttctcctttttggacaaaaattcaatgttaatcaaa 332  Q
      || |  |  ||||||| | ||||||||||| || |||| | |||||||||| || | | |||||||||||||||||||| |||||||||||| |||||    
T  12072395 atgcactaccacacacactgataaccaccaccaatccaacatacatctatcctttagactgtagttctcctttttggacaagaattcaatgtta-tcaaa 12072493  T
Q  333 ccattcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||| |||||||||||||||| ||||||||||||| |||||    
T  12072494 ccattcaatttatataatcacttaatcaatcaatttaaaaagttattt 12072541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 36060015 - 36059926
Alignment:
Q  292 tctagttctcctttttggacaaaaattcaatgttaatcaaaccat--tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||| |||||| ||||||||||  ||| || ||||||||   |||||||||||||||||||||||||| |||||||||||||||||    
T  36060015 tctagttctactttttagacaaaaatttgatgcta-tcaaaccaccatcaatttgtataatcacttaatcagttaatttaaaaagctattt 36059926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 39081398 - 39081441
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  39081398 tcaatttgtataatcacttaatcagtcaatttgaaaagctattt 39081441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 15457501 - 15457543
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  15457501 caatttgtataatcacttaatcagtcaatttgaaaagctattt 15457543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 19367481 - 19367440
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  19367481 aatttgtataatcacttaatcagtcaatttgaaaagctattt 19367440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 1418909 - 1418952
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||||  ||||||||||    
T  1418909 tcaatttgtataatcacttaatcagtcaatttgtaaagctattt 1418952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 18916117 - 18916075
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||| ||||||| |||||||||||    
T  18916117 caatttgtataatcacttaatcaatcaatttgaaaagctattt 18916075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 372
Target Start/End: Complemental strand, 21747293 - 21747259
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaa 372  Q
    |||||||||||||||||||||||||||||||||||    
T  21747293 caatttgtataatcacttaatcagtcaatttaaaa 21747259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 2063807 - 2063848
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  2063807 aatttgtataatcacttaatcagtcaatttggaaagctattt 2063848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 6530661 - 6530702
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||| ||||| |||||    
T  6530661 aatttgtataatcacttaatcagtcaatttgaaaaggtattt 6530702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 13020425 - 13020466
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  13020425 aatttgtataatcacttaatcagtcaatttggaaagctattt 13020466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 18173002 - 18172961
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||| ||||||| |||||||||||    
T  18173002 aatttgtataatcacttaatcactcaatttgaaaagctattt 18172961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 26151809 - 26151768
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  26151809 aatttgtataatcacttaatcagtcaatttggaaagctattt 26151768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 27302592 - 27302551
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctat 378  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  27302592 tcaatttgtataatcacttaatcggtcaatttgaaaagctat 27302551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 38599402 - 38599445
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||| ||||||| |||| ||||||    
T  38599402 tcaatttgtataatcacttaatcaatcaatttgaaaaactattt 38599445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 380
Target Start/End: Complemental strand, 33280388 - 33280303
Alignment:
Q  294 tagttctcctttttggacaaaaattcaatgttaatcaaaccattcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||| |||||| ||||||| ||||||| | || ||||| ||| |||||| |||||| |||| |||| |||||||||||| ||||||    
T  33280388 tagttatcctttctggacaagaattcaacgcta-tcaaatcatccaatttctataattacttgatcaatcaatttaaaaaactattt 33280303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 38985772 - 38985730
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||    
T  38985772 caatttgtataatcatttaatcaatcaatttgaaaagctattt 38985730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 4855995 - 4856036
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||| |||||  ||||||||||    
T  4855995 aatttgtataatcacttaatcagtgaatttggaaagctattt 4856036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 7993634 - 7993675
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||| ||||||  ||||||||||    
T  7993634 aatttgtataatcacttaatcagccaatttggaaagctattt 7993675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 18676373 - 18676332
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||| |||||||||||||||||  ||||||||||    
T  18676373 aatttgtataataacttaatcagtcaatttggaaagctattt 18676332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 25222325 - 25222366
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||| |||||||||| |||| |||||    
T  25222325 aatttgtataatcacttaattagtcaatttagaaagttattt 25222366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Complemental strand, 41096600 - 41096571
Alignment:
Q  339 aatttgtataatcacttaatcagtcaattt 368  Q
    ||||||||||||||||||||||||||||||    
T  41096600 aatttgtataatcacttaatcagtcaattt 41096571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 42411620 - 42411579
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||| |||||||||  ||||||||||    
T  42411620 aatttgtataatcacttaattagtcaatttggaaagctattt 42411579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Original strand, 45042391 - 45042420
Alignment:
Q  339 aatttgtataatcacttaatcagtcaattt 368  Q
    ||||||||||||||||||||||||||||||    
T  45042391 aatttgtataatcacttaatcagtcaattt 45042420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Original strand, 45618979 - 45619008
Alignment:
Q  339 aatttgtataatcacttaatcagtcaattt 368  Q
    ||||||||||||||||||||||||||||||    
T  45618979 aatttgtataatcacttaatcagtcaattt 45619008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 370
Target Start/End: Complemental strand, 18482570 - 18482538
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaa 370  Q
    |||||||||||||| ||||||||||||||||||    
T  18482570 caatttgtataatcgcttaatcagtcaatttaa 18482538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 149 - 368
Target Start/End: Complemental strand, 4207608 - 4207387
Alignment:
Q  149 tcttgtttcttctttcctccaacaacaa---cactgctttctttttctaaacctctctcatgttccaccccgacctccatcttgcagccgctcgcctcca 245  Q
    |||||||||||||||| |||||||||||   |||| ||||||| |||| ||||||||||  |||||  |||||||||| |||  |||  || |||| |||    
T  4207608 tcttgtttcttctttcttccaacaacaaaaccacttctttcttcttctcaacctctctcgcgttccctcccgacctccgtctctcagttgcgcgccacca 4207509  T
Q  246 cacaccggtaaccaccacctattcaactttcatctatcctctaaattctagttctcctttttggacaaaaattcaatgttaatcaaaccattcaatttgt 345  Q
    ||||| ||||||||||||| ||  ||| | ||| |||| | |  | |||||||||||||||||||||| ||||||||| || ||||||||| ||||||||    
T  4207508 cacactggtaaccaccaccaatcgaacatgcatatatcatttcgactctagttctcctttttggacaagaattcaatgcta-tcaaaccatccaatttgt 4207410  T
Q  346 ataatcacttaatcagtcaattt 368  Q
    ||||||||||||||| |||||||    
T  4207409 ataatcacttaatcattcaattt 4207387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 113 - 368
Target Start/End: Complemental strand, 35203009 - 35202751
Alignment:
Q  113 caatacccaccccataatcaaagggaaaaaacatgctcttgtttcttctttcctccaacaacaacactgctttctttttctaaacctctctcatgttcca 212  Q
    ||||||||||||||  |||||||| |||||| ||| |||| | ||||||||| ||||||| ||  ||| ||||||| ||||| |||||||||  ||||||    
T  35203009 caatacccacccca--atcaaaggaaaaaaaaatgttcttatctcttctttcttccaaca-cactacttctttcttcttctacacctctctcgcgttcca 35202913  T
Q  213 ccccgacctccatcttgcagccgctcgcctccacacaccggtaa-------ccaccacctattcaactttcatctatcctctaaattctagttctccttt 305  Q
     |   |||||||||| |||| ||| ||||||||||||| |||||       |||||||| || |||| |||||||||||| || | | ||||| ||||||    
T  35202912 tcataacctccatctcgcagtcgcgcgcctccacacactggtaagtggtaaccaccaccaatccaacattcatctatcctatagactttagttatccttt 35202813  T
Q  306 ttggacaaaaattcaatgttaatcaaaccattcaatttgtataatcacttaatcagtcaattt 368  Q
    ||||| || |||| ||| ||| ||||||||| ||||||||||||| |||||||||||||||||    
T  35202812 ttggataagaatttaatttta-tcaaaccatccaatttgtataattacttaatcagtcaattt 35202751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 380
Target Start/End: Original strand, 13401406 - 13401502
Alignment:
Q  285 tctaaattctagttctcctttttggacaaaaattcaatgttaatcaaaccattc--aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||| ||||||||||||||||| ||| | |||| ||  || |||||||| ||  |||||||||||||||||||||||||||||| |||||||||||    
T  13401406 tctaaactctagttctcctttttgtacatacattcgatccta-tcaaaccactcttaatttgtataatcacttaatcagtcaatttgaaaagctattt 13401502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 405
Target Start/End: Original strand, 21660434 - 21660560
Alignment:
Q  276 catctatcctctaaattctagttctcctttttggacaaaaattcaatgttaatcaaaccattcaatttgtataatcacttaatcagtcaatttaaaaagc 375  Q
    |||||||||| || | | || ||||||||||||||||| |||| |||| || |||||||||  ||| |||||||||||||||||| ||||||||||||      
T  21660434 catctatcctttagactatatttctcctttttggacaagaatttaatgcta-tcaaaccatcaaatctgtataatcacttaatcaatcaatttaaaaaat 21660532  T
Q  376 tatttaattaataatcataataatcctttc 405  Q
    ||||| |  || ||||| ||||||||||||    
T  21660533 tatttca--aagaatcacaataatcctttc 21660560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 7767063 - 7767106
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  7767063 tcaatttgtataatcacttaatcagtcaatttgaaaagctattt 7767106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 42009326 - 42009283
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  42009326 tcaatttgtataatcacttaatcagtcaatttaaaaagttattt 42009283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 46904742 - 46904785
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  46904742 tcaatttgtataatcacttaatcagtcaatttaaaaaactattt 46904785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 51939618 - 51939577
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  51939618 aatttgtataatcacttaatcagtcaatttgaaaagctattt 51939577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 386
Target Start/End: Original strand, 54430506 - 54430601
Alignment:
Q  292 tctagttctcctttttggacaaaaattcaatgttaatcaaaccattc--aatttgtataatcacttaatcagtcaatttaaaaagctatttaattaa 386  Q
    ||||||||||||||||| ||| ||||   |||||| ||||||||  |  |||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  54430506 tctagttctcctttttgtacataaatctgatgtta-tcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagttatttcattaa 54430601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 27303187 - 27303230
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||| ||||||| |||||||||||    
T  27303187 tcaatttgtataatcacttaatcaatcaatttgaaaagctattt 27303230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 36538250 - 36538207
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||||| |||| ||||||    
T  36538250 tcaatttgtataatcacttaatcagtcaatttgaaaaactattt 36538207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 50677378 - 50677335
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||||| |||| ||||||    
T  50677378 tcaatttgtataatcacttaatcagtcaatttgaaaaactattt 50677335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 18408193 - 18408231
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagcta 377  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  18408193 aatttgtataatcacttaatcagtcaatttgaaaagcta 18408231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 28132797 - 28132756
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  28132797 aatttgtataatcacttaatcagtcaatttggaaagctattt 28132756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 41707117 - 41707076
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||| ||||||||||||||||||||||| |||||||||||    
T  41707117 aatttgcataatcacttaatcagtcaatttgaaaagctattt 41707076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 52655185 - 52655144
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  52655185 aatttgtataatcacttaatcagtcaatttggaaagctattt 52655144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 40152193 - 40152145
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctatttaattaa 386  Q
    |||||||||||||||||||||| |||||||| |||| |||||| |||||    
T  40152193 caatttgtataatcacttaatcggtcaatttgaaaaactatttcattaa 40152145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 385
Target Start/End: Original strand, 21596336 - 21596383
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctatttaatta 385  Q
    |||||||||||||||||||||||||| ||||  |||||||||| ||||    
T  21596336 caatttgtataatcacttaatcagtcgatttggaaagctatttcatta 21596383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 43905907 - 43905864
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||    
T  43905907 tcaatttgtataatcactcaatcagtcaatttgaaaagttattt 43905864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 1649894 - 1649852
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||    
T  1649894 caatttgtataatcacttaatcattcaatttgaaaatctattt 1649852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 386
Target Start/End: Complemental strand, 19965995 - 19965895
Alignment:
Q  287 taaattctagttctcctttttggacaaaaattcaatgttaatcaaaccatt--caatttgtataatcacttaatcagtcaatttaaaaagctatttaatt 384  Q
    |||| |||| |||||||||||||||| ||||   ||| || |||||||| |  ||||||||||||||||||||| ||| || || ||||||||||| |||    
T  19965995 taaactctaattctcctttttggacataaatctgatgcta-tcaaaccactgccaatttgtataatcacttaattagttaaattgaaaagctatttcatt 19965897  T
Q  385 aa 386  Q
    ||    
T  19965896 aa 19965895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 48627092 - 48627050
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||| |||||||||||| |||| ||||||    
T  48627092 caatttgtataatcacttgatcagtcaatttgaaaatctattt 48627050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Original strand, 8364174 - 8364203
Alignment:
Q  339 aatttgtataatcacttaatcagtcaattt 368  Q
    ||||||||||||||||||||||||||||||    
T  8364174 aatttgtataatcacttaatcagtcaattt 8364203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 21784846 - 21784805
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||| |||||  ||||||||||    
T  21784846 aatttgtataatcacttaatcagttaatttggaaagctattt 21784805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Original strand, 24252622 - 24252651
Alignment:
Q  339 aatttgtataatcacttaatcagtcaattt 368  Q
    ||||||||||||||||||||||||||||||    
T  24252622 aatttgtataatcacttaatcagtcaattt 24252651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 25599148 - 25599107
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||| |||||||||||||||||||||||| |||| ||||||    
T  25599148 aatttatataatcacttaatcagtcaatttgaaaaactattt 25599107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 29387816 - 29387775
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||| ||||||| ||||| |||||    
T  29387816 aatttgtataatcacttaatcaatcaatttgaaaagttattt 29387775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Complemental strand, 46791759 - 46791730
Alignment:
Q  339 aatttgtataatcacttaatcagtcaattt 368  Q
    ||||||||||||||||||||||||||||||    
T  46791759 aatttgtataatcacttaatcagtcaattt 46791730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 244 - 372
Target Start/End: Complemental strand, 2445930 - 2445805
Alignment:
Q  244 cacacaccggtaaccaccacctattcaactttcatctatcctctaaattctagttctcctttttggacaaaaattcaatgttaatcaaaccattcaattt 343  Q
    ||||||||||||||||||||| || |||||| ||||||||||||| | ||||||  ||||||||  |||| ||||  ||| | |||||||||||||||||    
T  2445930 cacacaccggtaaccaccaccaatccaacttacatctatcctctagactctagt--tcctttttttacaagaatttgatgct-atcaaaccattcaattt 2445834  T
Q  344 gtataatcacttaatcagtcaatttaaaa 372  Q
    ||||||||||||||||  |||| ||||||    
T  2445833 gtataatcacttaatctatcaaattaaaa 2445805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 380
Target Start/End: Complemental strand, 40738108 - 40738012
Alignment:
Q  285 tctaaattctagttctcctttttggacaaaaattcaatgttaatcaaaccat--tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||| ||||||||| |||||| |||| |||||  ||| || ||||||||   |||||||||||||| |||||||||||||||||||||||||||||    
T  40738108 tctaaactctagttctacttttttgacataaatttgatgcta-tcaaaccaccatcaatttgtataattacttaatcagtcaatttaaaaagctattt 40738012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 26633363 - 26633406
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  26633363 tcaatttgtataatcacttaatcagtcaatttgaaaagctattt 26633406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 380
Target Start/End: Original strand, 9479074 - 9479170
Alignment:
Q  285 tctaaattctagttctcctttttggacaaaaattcaatgttaatcaaaccat--tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||| ||||||||| |||| |||||| |||||  ||| || ||||||||   |||||||||||||| |||||||||||||||||||||| ||||||    
T  9479074 tctaaactctagttctactttctggacataaatttgatgcta-tcaaaccaccatcaatttgtataattacttaatcagtcaatttaaaaaactattt 9479170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 26282605 - 26282563
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  26282605 caatttgtataatcacttaatcagtcaatttgaaaagctattt 26282563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 40001759 - 40001717
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  40001759 caatttgtataatcacttaatcagtcaatttgaaaagctattt 40001717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 30739122 - 30739172
Alignment:
Q  336 ttcaatttgtataatcacttaatcagtcaatttaaaaagctatttaattaa 386  Q
    |||||||| |||||||||||||||||||||||| ||||| ||||| |||||    
T  30739122 ttcaatttttataatcacttaatcagtcaatttgaaaagttatttcattaa 30739172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 4099970 - 4100011
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||| ||||||| |||||||||||    
T  4099970 aatttgtataatcacttaatcaatcaatttgaaaagctattt 4100011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 7636388 - 7636347
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  7636388 aatttgtataattacttaatcagtcaatttgaaaagctattt 7636347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 18895459 - 18895418
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  18895459 aatttgtataatcaattaatcagtcaatttaaaaagttattt 18895418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 33910066 - 33910107
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||| |||||||||||||||| |||||||||||    
T  33910066 aatttgtataatcgcttaatcagtcaatttgaaaagctattt 33910107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 373
Target Start/End: Complemental strand, 36438415 - 36438379
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaa 373  Q
    |||||||||||||||||||||||||||||||| ||||    
T  36438415 tcaatttgtataatcacttaatcagtcaatttgaaaa 36438379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 374
Target Start/End: Complemental strand, 8358356 - 8358321
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaag 374  Q
    ||||| ||||||||||||||||||||||||||||||    
T  8358356 aatttatataatcacttaatcagtcaatttaaaaag 8358321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 386
Target Start/End: Original strand, 42312012 - 42312058
Alignment:
Q  340 atttgtataatcacttaatcagtcaatttaaaaagctatttaattaa 386  Q
    |||||||||||||||| || ||||||||| ||||||||||| |||||    
T  42312012 atttgtataatcacttgattagtcaatttgaaaagctatttcattaa 42312058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 773946 - 773905
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  773946 aatttgtataattactttatcagtcaatttgaaaagctattt 773905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Original strand, 11672588 - 11672617
Alignment:
Q  339 aatttgtataatcacttaatcagtcaattt 368  Q
    ||||||||||||||||||||||||||||||    
T  11672588 aatttgtataatcacttaatcagtcaattt 11672617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 18015644 - 18015603
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||| |||||||  ||||||||||    
T  18015644 aatttgtataatcacttaatcaatcaatttggaaagctattt 18015603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 44894091 - 44894050
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||| |||||||  ||||||||||    
T  44894091 aatttgtataatcacttaatcaatcaatttggaaagctattt 44894050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 46221765 - 46221724
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||| |||||||||||||||||||||  ||||||||||    
T  46221765 aatttgtagaatcacttaatcagtcaatttggaaagctattt 46221724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 44876218 - 44876170
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctatttaattaa 386  Q
    |||||| || ||||| |||||||||||||||| |||||||||| |||||    
T  44876218 caatttttaaaatcatttaatcagtcaatttagaaagctatttcattaa 44876170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 247 - 380
Target Start/End: Complemental strand, 525001 - 524870
Alignment:
Q  247 acaccggtaaccaccacctattcaactttcatctatcctctaaattctagttctcctttttggacaaaaattcaatgttaatcaaaccattcaatttgta 346  Q
    |||||||||||||||||| || ||||   |||||||||| || | ||||||||||||||||||| || ||||||||| |  |||||||||  ||||| ||    
T  525001 acaccggtaaccaccaccaatccaacacacatctatcctttagactctagttctcctttttggaaaagaattcaatgct-ctcaaaccatctaattt-ta 524904  T
Q  347 taatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||| |||||||||||| ||||||    
T  524903 taatcacttaatcaatcaatttaaaaaactattt 524870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 138 - 380
Target Start/End: Complemental strand, 37029294 - 37029053
Alignment:
Q  138 aaaaaacatgctcttgtttcttctttcctccaacaacaac---actgctttctttttctaaacctctctcatgttccaccccgacctccatcttgcagcc 234  Q
    |||||||||| |||||||||| ||||| || |||| |||    ||| ||||||| |||| |||||||||  |||| |  || |||||||||||  ||| |    
T  37029294 aaaaaacatgttcttgtttctcctttcttctaacagcaaggctacttctttcttcttctcaacctctcttgtgtttcctcctgacctccatctctcagtc 37029195  T
Q  235 gctcgcctccacacaccggtaaccaccacctattcaactttcatctatcctctaaattctagttctcctttttggacaaaaattcaatgtta---atcaa 331  Q
    || ||||||||||||||||||||||||||| || || | | |       || || | |||||||||||||||| ||  ||||||||||  |    |||||    
T  37029194 gcacgcctccacacaccggtaaccaccaccaatccaccatac-------ctttagactctagttctcctttttagatcaaaattcaattcttgctatcaa 37029102  T
Q  332 accattcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    | ||| ||||||||||||||||||||||| |||||||||||||||||||    
T  37029101 atcatccaatttgtataatcacttaatcaatcaatttaaaaagctattt 37029053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 19099376 - 19099335
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19099376 aatttgtataatcacttaatcagtcaatttaaaaagctattt 19099335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 138144 - 138187
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  138144 tcaatttgtataatcacttaatcagtcaatttgaaaagctattt 138187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 43511619 - 43511661
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  43511619 caatttgtataatcacttaatcagtcaatttgaaaagctattt 43511661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 931381 - 931422
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctatt 379  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  931381 caatttgtataatcacttaatcagtcaatttagaaagctatt 931422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 29156192 - 29156233
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  29156192 aatttgtataatcacttaatcagtcaatttaaaaagttattt 29156233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 13423852 - 13423907
Alignment:
Q  327 atcaaaccattc--aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||  |||||||||||||||||||||| |||||||| ||||||||||    
T  13423852 atcaaaccattcctaatttgtataatcacttaatcaatcaatttagaaagctattt 13423907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 7390460 - 7390421
Alignment:
Q  341 tttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  7390460 tttgtataatcacttaatcagtcaatttaaaaagttattt 7390421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 371
Target Start/End: Original strand, 5829385 - 5829419
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaa 371  Q
    |||||||||||||||||||||||||||||||||||    
T  5829385 tcaatttgtataatcacttaatcagtcaatttaaa 5829419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 17513999 - 17513957
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  17513999 caatttgtataatcacttaatcagtcaatttgaaaagttattt 17513957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 20975986 - 20976028
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||| ||||||||||||||| |||||||||||    
T  20975986 caatttgtataatcatttaatcagtcaatttgaaaagctattt 20976028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 42291944 - 42291902
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  42291944 caatttgtataatcacttaatcagtcaatttgaaaatctattt 42291902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 13656212 - 13656253
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||| ||||| |||||    
T  13656212 aatttgtataatcacttaatcagtcaatttgaaaagttattt 13656253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 33281677 - 33281717
Alignment:
Q  340 atttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||| ||||||||||||||| |||||    
T  33281677 atttgtataatcacttaattagtcaatttaaaaagttattt 33281717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 374
Target Start/End: Original strand, 13474632 - 13474667
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaag 374  Q
    |||||||||||||||||||||||||||||| |||||    
T  13474632 aatttgtataatcacttaatcagtcaatttgaaaag 13474667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 10591336 - 10591294
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||    
T  10591336 caatttgtataatcacttaatcagttaatttgaaaagttattt 10591294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 12661311 - 12661352
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||| ||||||||||  ||||||||||    
T  12661311 aatttgtataatcacttaaccagtcaatttggaaagctattt 12661352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 18873459 - 18873500
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||| ||||||||||| |||||| |||||||||||    
T  18873459 aatttgtataaccacttaatcagccaatttgaaaagctattt 18873500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 525104 - 525035
Alignment:
Q  113 caatacccaccccat-aatcaaagggaaaaaa----catgctcttgtttcttctttcctccaacaacaac 177  Q
    ||||||||||||| | ||||||||||||||||    |||| |||||||||||||||| ||||||| ||||    
T  525104 caatacccaccccctcaatcaaagggaaaaaaaaagcatgttcttgtttcttctttcttccaacagcaac 525035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 40956314 - 40956362
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctatttaattaa 386  Q
    ||||||||||||||||||||||| | ||||| |||| |||||| |||||    
T  40956314 caatttgtataatcacttaatcatttaatttgaaaaactatttcattaa 40956362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 285 - 386
Target Start/End: Complemental strand, 43154905 - 43154803
Alignment:
Q  285 tctaaattctagttctcctttttggacaaaaattcaatgttaatcaaaccat--tcaatttgtataatcacttaatcagtcaatttaaaaagctatttaa 382  Q
    |||| ||||||||||| ||||||||||| |||||  ||| || ||||||||   |||||||||||||||||||||||||||||||||||||| ||||| |    
T  43154905 tctagattctagttctactttttggacataaatttgatgcta-tcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaagttatttca 43154807  T
Q  383 ttaa 386  Q
    ||||    
T  43154806 ttaa 43154803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 45172707 - 45172666
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  45172707 aatttgtataatcacttaatcagtcaatttgaaaagctattt 45172666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 35654044 - 35654001
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||| ||||||| |||||||||||    
T  35654044 tcaatttgtataatcacttaatcaatcaatttgaaaagctattt 35654001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 386
Target Start/End: Original strand, 53011714 - 53011761
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctatttaattaa 386  Q
    ||||||||||||||||||||||||||||||  |||||||||| |||||    
T  53011714 aatttgtataatcacttaatcagtcaatttggaaagctatttcattaa 53011761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 19661381 - 19661422
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  19661381 aatttgtataatcacttaatcagtcaatttggaaagctattt 19661422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 23256596 - 23256637
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  23256596 aatttgtataaccacttaatcagtcaatttagaaagctattt 23256637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 23426228 - 23426187
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  23426228 aatttgtataatcacttaatcagtcaatttggaaagctattt 23426187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 32130852 - 32130811
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  32130852 aatttgtataatcacttaatcagtcaatttgaaaaactattt 32130811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 5545330 - 5545378
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctatttaattaa 386  Q
    |||||||||||||||||||||| ||||||||  |||||||||| |||||    
T  5545330 caatttgtataatcacttaatcggtcaatttggaaagctatttcattaa 5545378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 380
Target Start/End: Complemental strand, 21791612 - 21791568
Alignment:
Q  336 ttcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||| |||||||||||||||||||||||||| ||||| |||||    
T  21791612 ttcaatgtgtataatcacttaatcagtcaatttgaaaagttattt 21791568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 10575587 - 10575544
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||| |||||||||||||||||||||||||||| |||| |||||    
T  10575587 tcaacttgtataatcacttaatcagtcaatttagaaagttattt 10575544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 24449126 - 24449169
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||    
T  24449126 tcaatttgtataatcacttaatcggtcaatttgaaaaactattt 24449169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 377
Target Start/End: Original strand, 27632345 - 27632438
Alignment:
Q  285 tctaaattctagttctcctttttggacaaaaattcaatgttaatcaaaccattc--aatttgtataatcacttaatcagtcaatttaaaaagcta 377  Q
    |||| ||||||||||||||||||| ||| |||||  ||  || ||||||||  |  |||||||||||||||||||| ||||||||| ||||||||    
T  27632345 tctagattctagttctcctttttgtacataaatttgatccta-tcaaaccacccctaatttgtataatcacttaattagtcaatttgaaaagcta 27632438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 34982225 - 34982267
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||  |||| ||||||    
T  34982225 caatttgtataatcacttaatcagtcaattggaaaaactattt 34982267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 55134209 - 55134251
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||    
T  55134209 caattggtataatgacttaatcagtcaatttgaaaagctattt 55134251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 16072596 - 16072637
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||| ||||||||||||||| |||| ||||||    
T  16072596 aatttgtataatcatttaatcagtcaatttgaaaaactattt 16072637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 28463650 - 28463609
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||| |||| || |||||||||||    
T  28463650 aatttgtataatcacttaatcaatcaagttgaaaagctattt 28463609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Original strand, 41038252 - 41038281
Alignment:
Q  339 aatttgtataatcacttaatcagtcaattt 368  Q
    ||||||||||||||||||||||||||||||    
T  41038252 aatttgtataatcacttaatcagtcaattt 41038281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 44478041 - 44478082
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||| |||||||||||||  ||||||||||    
T  44478041 aatttgtataatcactaaatcagtcaatttggaaagctattt 44478082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 350
Target Start/End: Original strand, 7773418 - 7773586
Alignment:
Q  183 tttctttttctaaacctctctcatgttccaccccgacctccatcttgcagccgctcgcctccacaca--ccggtaaccaccacctattcaactttcatct 280  Q
    |||||| |||| ||||||| |  ||||||  ||| ||||||||||  ||||||| | || ||||| |  ||| ||||||||||| || |||| | |||||    
T  7773418 tttcttcttctcaacctctattgtgttccctcccaacctccatctctcagccgcgcaccaccacataaaccgctaaccaccaccaatccaacatacatct 7773517  T
Q  281 atcctctaaattctagttctcctttttggacaaaaattcaatgttaatcaaaccattcaatttgtataat 350  Q
    ||||| || | |||||||||||||||||||||| ||||  ||| | |||||||||| |||||||||||||    
T  7773518 atcctttatactctagttctcctttttggacaagaattttatgct-atcaaaccatccaatttgtataat 7773586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 12531560 - 12531602
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  12531560 caatttgtataatcacttaatcagtcaatttaaaaatctattt 12531602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 34524014 - 34523972
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  34524014 caatttgtataatcacttaatcagtcaatttgaaaagctattt 34523972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 3471602 - 3471643
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  3471602 aatttgtataatcacttaatcagtcaatttgaaaagctattt 3471643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 30915351 - 30915303
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctatttaattaa 386  Q
    |||| |||||||||||||||||||||||||| ||||||||||| |||||    
T  30915351 caatatgtataatcacttaatcagtcaatttgaaaagctatttcattaa 30915303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 5971819 - 5971777
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||| ||| ||||||||||||||||||||||||||||||||    
T  5971819 caatttctatcatcacttaatcagtcaatttaaaaagctattt 5971777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 350
Target Start/End: Original strand, 7790126 - 7790226
Alignment:
Q  249 accggtaaccaccacctattcaactttcatctatcctctaaattctagttctcctttttggacaaaaattcaatgttaatcaaaccattcaatttgtata 348  Q
    |||| ||||||||||| || |||| | |||||||||| || | | |||||||||||| ||||||||||||  || |  |||||||||| |||||||||||    
T  7790126 accgctaaccaccaccaatccaacatacatctatcctttatactgtagttctcctttgtggacaaaaattttat-tctatcaaaccatccaatttgtata 7790224  T
Q  349 at 350  Q
    ||    
T  7790225 at 7790226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 350
Target Start/End: Original strand, 7810712 - 7810812
Alignment:
Q  249 accggtaaccaccacctattcaactttcatctatcctctaaattctagttctcctttttggacaaaaattcaatgttaatcaaaccattcaatttgtata 348  Q
    |||| ||||||||||| || |||| | |||||||||| || | | |||||||||||| ||||||||||||  || |  |||||||||| |||||||||||    
T  7810712 accgctaaccaccaccaatccaacatacatctatcctttatactgtagttctcctttgtggacaaaaattttat-tctatcaaaccatccaatttgtata 7810810  T
Q  349 at 350  Q
    ||    
T  7810811 at 7810812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 18420671 - 18420634
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagct 376  Q
    |||||||||||||||||||||||||||||| |||||||    
T  18420671 aatttgtataatcacttaatcagtcaatttgaaaagct 18420634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 372
Target Start/End: Original strand, 27074576 - 27074609
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaa 372  Q
    ||||||||||||||||||||||||||||||||||    
T  27074576 aatttgtataatcacttaatcagtcaatttaaaa 27074609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 42951831 - 42951790
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||| ||||| |||||    
T  42951831 aatttgtataatcacttaatcagtcaatttgaaaagttattt 42951790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 43926385 - 43926344
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  43926385 aatttgtataattacttaatcagtcaatttgaaaagctattt 43926344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 368
Target Start/End: Complemental strand, 32098288 - 32098211
Alignment:
Q  292 tctagttctcctttttggacaaaaattcaatgttaatcaaaccattc--aatttgtataatcacttaatcagtcaattt 368  Q
    ||||||| ||||||||||||| |||||  ||| || |||||||| ||  ||||||||| ||||||||||||||||||||    
T  32098288 tctagttatcctttttggacataaatttgatgcta-tcaaaccactcttaatttgtatgatcacttaatcagtcaattt 32098211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 35874926 - 35874969
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||    
T  35874926 tcaatttgtataatcacttaatcggtcaatttgaaaaactattt 35874969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 373
Target Start/End: Original strand, 1004060 - 1004094
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaa 373  Q
    |||||||||||||||||||||||||||||| ||||    
T  1004060 aatttgtataatcacttaatcagtcaatttgaaaa 1004094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 5869385 - 5869343
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||| || ||||||||||||||||||||| |||||||||||    
T  5869385 caatttttaaaatcacttaatcagtcaatttgaaaagctattt 5869343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 368
Target Start/End: Complemental strand, 23567337 - 23567307
Alignment:
Q  338 caatttgtataatcacttaatcagtcaattt 368  Q
    |||||||||||||||||||||||||||||||    
T  23567337 caatttgtataatcacttaatcagtcaattt 23567307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 3628809 - 3628768
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||| |||||||||||||| ||||| |||||    
T  3628809 aatttgtataatcacataatcagtcaatttgaaaagttattt 3628768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Original strand, 7858087 - 7858116
Alignment:
Q  339 aatttgtataatcacttaatcagtcaattt 368  Q
    ||||||||||||||||||||||||||||||    
T  7858087 aatttgtataatcacttaatcagtcaattt 7858116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 13585301 - 13585342
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||| |||||||||||||||  ||||||||||    
T  13585301 aatttgtataatcaattaatcagtcaatttggaaagctattt 13585342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Original strand, 18112118 - 18112147
Alignment:
Q  339 aatttgtataatcacttaatcagtcaattt 368  Q
    ||||||||||||||||||||||||||||||    
T  18112118 aatttgtataatcacttaatcagtcaattt 18112147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 378
Target Start/End: Original strand, 42076108 - 42076149
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctat 378  Q
    |||||||||||||| ||||||||| ||||||| |||||||||    
T  42076108 tcaatttgtataataacttaatcaatcaatttgaaaagctat 42076149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 43968132 - 43968091
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||| ||||||| ||||| |||||    
T  43968132 aatttgtataatcacttaatcaatcaatttgaaaagttattt 43968091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 12884199 - 12884158
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12884199 aatttgtataatcacttaatcagtcaatttaaaaagctattt 12884158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 5560484 - 5560526
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  5560484 caatttgtataatcacttaatcagtcaatttaaaaagttattt 5560526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 12971407 - 12971449
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  12971407 caatttgtataatcacttaatcagtcaatttgaaaagctattt 12971449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 405
Target Start/End: Complemental strand, 32810459 - 32810349
Alignment:
Q  292 tctagttctcctttttggacaaaaattcaatgttaatcaaaccattcaatttgtataatcacttaatcagtcaatttaaaaagctatttaattaataatc 391  Q
    ||||||||| |||||||||||| |||| |||| || | |||| ||  |||||| ||||||||||||||| ||||||| ||||||||||| |  || ||||    
T  32810459 tctagttcttctttttggacaagaatttaatgctatt-aaactatctaatttgaataatcacttaatcaatcaatttgaaaagctatttca--aagaatc 32810363  T
Q  392 ataataatcctttc 405  Q
     |||||||||||||    
T  32810362 ctaataatcctttc 32810349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 386
Target Start/End: Original strand, 15441244 - 15441339
Alignment:
Q  292 tctagttctcctttttggacaaaaattcaatgttaatcaaacca--ttcaatttgtataatcacttaatcagtcaatttaaaaagctatttaattaa 386  Q
    |||||||||||||| | |||| ||||  |||| || ||||||||  | ||||||||||||||||||||||| |||||||| |||||||||| |||||    
T  15441244 tctagttctcctttctagacataaatataatgcta-tcaaaccacctacaatttgtataatcacttaatcactcaatttataaagctatttcattaa 15441339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 18127999 - 18127958
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  18127999 aatttgtataatcacttaatcagtcaatttgaaaagctattt 18127958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 44836785 - 44836742
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||||| |||| ||||||    
T  44836785 tcaatttgtataatcacttaatcagtcaatttgaaaaactattt 44836742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 27703592 - 27703550
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||||  ||||||||||    
T  27703592 caatttgtataatcacttaatcagtcaatttggaaagctattt 27703550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 14084759 - 14084722
Alignment:
Q  343 tgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  14084759 tgtataatcacttaatcagtcaatttagaaagctattt 14084722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 25930606 - 25930647
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  25930606 aatttgtataatcacttaatcagtcaacttgaaaagctattt 25930647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 33124692 - 33124651
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  33124692 aatttgtataatcacttaataagtcaatttgaaaagctattt 33124651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 48722432 - 48722391
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  48722432 aatttgtataatcacttaatcagtcaatttggaaagctattt 48722391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 51110163 - 51110122
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  51110163 aatttctataatcacttaatcagtcaatttagaaagctattt 51110122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 373
Target Start/End: Original strand, 50371134 - 50371170
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaa 373  Q
    |||||||||||||||||||||||||||||||| ||||    
T  50371134 tcaatttgtataatcacttaatcagtcaatttgaaaa 50371170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 17674418 - 17674375
Alignment:
Q  337 tcaatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||| ||||||||||||||||||||||| |||| ||||||    
T  17674418 tcaatttgaataatcacttaatcagtcaatttgaaaaactattt 17674375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 30004970 - 30004928
Alignment:
Q  338 caatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||| | ||||| |||||||||||    
T  30004970 caatttgtataatcacttaatcaattaatttgaaaagctattt 30004928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Original strand, 9 - 38
Alignment:
Q  339 aatttgtataatcacttaatcagtcaattt 368  Q
    ||||||||||||||||||||||||||||||    
T  9 aatttgtataatcacttaatcagtcaattt 38  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 6150723 - 6150764
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||| |||||||| ||||||||||||||| |||||||||||    
T  6150723 aatttatataatcatttaatcagtcaatttgaaaagctattt 6150764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Original strand, 10109722 - 10109751
Alignment:
Q  339 aatttgtataatcacttaatcagtcaattt 368  Q
    ||||||||||||||||||||||||||||||    
T  10109722 aatttgtataatcacttaatcagtcaattt 10109751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 13120928 - 13120887
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||| ||||||||||||||||||||||| |||| ||||||    
T  13120928 aatttgaataatcacttaatcagtcaatttgaaaaactattt 13120887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 28885733 - 28885692
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||| |||||||  ||||||||||    
T  28885733 aatttgtataatcacttaatcaatcaattttgaaagctattt 28885692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 30899658 - 30899699
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||| |||||||||  ||||||||||    
T  30899658 aatttgtataatcacttaattagtcaatttggaaagctattt 30899699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 50552497 - 50552538
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||| |||||||| ||||| |||||    
T  50552497 aatttgtataatcacttaatcggtcaatttgaaaagttattt 50552538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 358
Target Start/End: Complemental strand, 31369506 - 31369432
Alignment:
Q  285 tctaaattctagttctcctttttggacaaaaattcaatgttaatcaaacca--ttcaatttgtataatcacttaat 358  Q
    |||||| |||| ||||||||| |||||| ||||   |||||| ||||||||  |||||||||||||||||||||||    
T  31369506 tctaaactctaattctcctttctggacataaatctgatgtta-tcaaaccactttcaatttgtataatcacttaat 31369432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 350
Target Start/End: Complemental strand, 1787 - 1687
Alignment:
Q  249 accggtaaccaccacctattcaactttcatctatcctctaaattctagttctcctttttggacaaaaattcaatgttaatcaaaccattcaatttgtata 348  Q
    |||| ||||||||||| || |||| | |||||||||| || ||| |||||||||||| ||||||||||||  || |  |||||||||| |||||||||||    
T  1787 accgctaaccaccaccaatccaacatacatctatcctttatattgtagttctcctttgtggacaaaaattttat-tctatcaaaccatccaatttgtata 1689  T
Q  349 at 350  Q
    ||    
T  1688 at 1687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 16712 - 16753
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  16712 aatttgtataatcacttaatcagtcaatttgaaaagctattt 16753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 17194 - 17153
Alignment:
Q  339 aatttgtataatcacttaatcagtcaatttaaaaagctattt 380  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  17194 aatttgtataatcacttaatcagtcaatttggaaagctattt 17153  T

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