View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15311_low_14 (Length: 430)
Name: NF15311_low_14
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 14 - 409
Target Start/End: Complemental strand, 41000706 - 41000314
Alignment:
| Q |
14 |
caaagggaaggtgtttattcatggtgctaatgagagcacagccaatgcctacaagagacagttcaaaacagatttggcaagcttcttgagtgcaaggtca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41000706 |
caaagggaaggtgtttattcatggtgctaatgagagcacagccaatgcctacaagagacagttcaaaacagatttggcaagcttcttgagtgcaaggtca |
41000607 |
T |
|
| Q |
114 |
gtggaaatgaagagagaggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggaccc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41000606 |
gtggaaatgaagagagaggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggaccc |
41000507 |
T |
|
| Q |
214 |
actttcaggatgcttgggatgaccttgtacaagaggtataataataataattagaaacatttttatgcatgctttgtgttttttgaacagtagtcacttc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41000506 |
actttcaggatgcttgggatgaccttgtacaagaggtataataa---taattagaaacatttttatgcatgctttgtgttttttgaacagtagtcacttc |
41000410 |
T |
|
| Q |
314 |
acaatcacatatatatagcctctatttacaattggcagaccaaaaaggagttgtagatagacactattgagataaatatcaatagaaaaacacaat |
409 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41000409 |
acaatcacatatatttagcctctatttacaattggcagaccaaaaaggagttgtagatagacactattgagataaatatcaataaaaaaacacaat |
41000314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 14 - 409
Target Start/End: Complemental strand, 20853045 - 20852653
Alignment:
| Q |
14 |
caaagggaaggtgtttattcatggtgctaatgagagcacagccaatgcctacaagagacagttcaaaacagatttggcaagcttcttgagtgcaaggtca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20853045 |
caaagggaaggtgtttattcatggtgctaatgagagcacagccaatgcctacaagagacagttcaaaacagatttggcaagcttcttgagtgcaaggtca |
20852946 |
T |
|
| Q |
114 |
gtggaaatgaagagagaggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggaccc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20852945 |
gtggaaatgaagagagaggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggaccc |
20852846 |
T |
|
| Q |
214 |
actttcaggatgcttgggatgaccttgtacaagaggtataataataataattagaaacatttttatgcatgctttgtgttttttgaacagtagtcacttc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20852845 |
actttcaggatgcttgggatgaccttgtacaagaggtataataa---taattagaaacatttttatgcatgctttgtgttttttgaacagtagtcacttc |
20852749 |
T |
|
| Q |
314 |
acaatcacatatatatagcctctatttacaattggcagaccaaaaaggagttgtagatagacactattgagataaatatcaatagaaaaacacaat |
409 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20852748 |
acaatcacatatatttagcctctatttacaattggcagaccaaaaaggagttgtagatagacactattgagataaatatcaataaaaaaacacaat |
20852653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 130 - 251
Target Start/End: Complemental strand, 21556886 - 21556765
Alignment:
| Q |
130 |
aggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggacccactttcaggatgcttg |
229 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||| || || |||||||| ||||| | || |||||||||||||||||||||||||| |
|
|
| T |
21556886 |
aggggtccatgttcttggtttgtttaggcagaacttcagtggaccctactgaccaaggtggggctggtctcctctttgggacccactttcaggatgcttg |
21556787 |
T |
|
| Q |
230 |
ggatgaccttgtacaagaggta |
251 |
Q |
| |
|
|||||| ||||| ||||||||| |
|
|
| T |
21556786 |
ggatgatcttgtccaagaggta |
21556765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 37129008 - 37128925
Alignment:
| Q |
64 |
acaagagacagttcaaaacagatttggcaa-gcttcttgagtgcaaggtcagtggaaatgaagagagaggggtccatgttctta |
146 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
37129008 |
acaagagacaattcaaaacagatttggcaaagcttcttgggtgcaaggtcaatggaaatgaagagagagggatccatgttctta |
37128925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 37128805 - 37128871
Alignment:
| Q |
287 |
ttgtgttttttgaacagtagtcacttcacaatcacatatatatagcctctatttacaattggcagaccaaa |
357 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
37128805 |
ttgtgttttttgaacagtagtcatttcacaatcac----atatagcctctatttacaattggcataccaaa |
37128871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University