View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15311_low_15 (Length: 427)
Name: NF15311_low_15
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 79 - 411
Target Start/End: Original strand, 54197984 - 54198316
Alignment:
| Q |
79 |
ggacacatgaagaatcagtcaatctaagattaatatatgtttcggccgcggtgtctcctatggtctttgtttgcccatcttcagattatgtcatccatca |
178 |
Q |
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| T |
54197984 |
ggacacatgaagaatcagtcaatctaagattaatatatgtttcggccgcggtgtctcctatggtctttgtttgcccatcttcagattatgtcatccatca |
54198083 |
T |
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| Q |
179 |
ataatcacattgaggaccaaagttcatgaacaattatacagaatgatcaagttaaactttcttggtcgatgatgacgataattaatttataaaattttgc |
278 |
Q |
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| T |
54198084 |
ataatcacattgaggaccaaagttcatgaacaattatacagaatgatcaagttaaactttcttggtcgatgatgacgataattaatttataaaattttgc |
54198183 |
T |
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| Q |
279 |
tatagtatacatataagttgtcatgggaccaagaattatgtaacaaaaattgtatgatataattagtcnnnnnnncaattgtatcatataaattgtgttt |
378 |
Q |
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| T |
54198184 |
tatagtatacatataagttgtcatgggaccaagaattatgtaacaaaaattgtatgatataattagtcaaaaaaacaattgtatcatataaattgtgttt |
54198283 |
T |
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| Q |
379 |
cttaaaaaactaataataatgcacaaaccatgt |
411 |
Q |
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| T |
54198284 |
cttaaaaaactaataataatgcacaaaccatgt |
54198316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 54197925 - 54197970
Alignment:
| Q |
8 |
agagatgaacacacttttgaagtttgcacttttttgtagtattact |
53 |
Q |
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| T |
54197925 |
agagaagaacacacttttgaagtttgcacttttttgtagtattact |
54197970 |
T |
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