View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15311_low_17 (Length: 394)

Name: NF15311_low_17
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15311_low_17
NF15311_low_17
[»] chr6 (14 HSPs)
chr6 (18-394)||(11314935-11315311)
chr6 (72-327)||(11196367-11196622)
chr6 (72-327)||(11199357-11199612)
chr6 (72-327)||(11160781-11161036)
chr6 (72-327)||(11155914-11156169)
chr6 (72-327)||(11241692-11241947)
chr6 (152-281)||(11209116-11209245)
chr6 (152-280)||(11170294-11170422)
chr6 (182-281)||(11275708-11275807)
chr6 (182-327)||(11132748-11132893)
chr6 (256-327)||(11199716-11199787)
chr6 (72-141)||(11275583-11275652)
chr6 (89-141)||(11209038-11209090)
chr6 (89-141)||(11170216-11170268)
[»] scaffold1207 (2 HSPs)
scaffold1207 (182-281)||(642-741)
scaffold1207 (101-141)||(546-586)


Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Complemental strand, 11315311 - 11314935
Alignment:
Q  18 ttttcaatcccagggacaaaggattgacctccctcaaaggaaacttttgcttaacactcaacatagcagcgtggacagcagcgccatatacaaccgcctt 117  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11315311 ttttcaatcccagggacaaaggaatgacctccctcaaaggaaacttctgcttaacactcaacatagcagcgtggacagcagcgccatatgcaaccgcctt 11315212  T
Q  118 atcagcattgatgcttttgcataatttcttctcaccaaagaaaccactcaaacgtcgatgcagctttacaatcctagtagagccgccaacaagcacaaca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11315211 atcagcattgatgcttttgcataatttcttctcaccaaagaaaccacttaaacgtcgatgcagctttacaatcctagtagagccgccaacaagcacaaca 11315112  T
Q  218 tcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatctccatgcactttttgatgtgatgctcgttgagttcttcaaactttg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  11315111 tcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatcttcatgcactttttgatgtgatgttcgttgagttcttcaaactttg 11315012  T
Q  318 cgcgactaatttttgattcgagattttcaccttgatttaaagattttatcacaatggtggtctcatatttagatgac 394  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||    
T  11315011 cgcgactaatttttgattcgagattttcacctcggtttaaagattttatcacaatggtggtctcatatttatatgac 11314935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 72 - 327
Target Start/End: Original strand, 11196367 - 11196622
Alignment:
Q  72 cactcaacatagcagcgtggacagcagcgccatatacaaccgccttatcagcattgatgcttttgcataatttcttctcaccaaagaaaccactcaaacg 171  Q
    ||||||| |||| ||| |||||||||||||||||| | ||||||| |||  |||||||||||||||||||   |||| | || |||||| ||||||        
T  11196367 cactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccat 11196466  T
Q  172 tcgatgcagctttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatc 271  Q
    | | ||||  ||||||||||||||||||||||||||||| |||||||||||||||  ||||||| |||||||||||||   || ||||||||| ||||||    
T  11196467 ttgttgcacttttacaatcctagtagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatc 11196566  T
Q  272 tccatgcactttttgatgtgatgctcgttgagttcttcaaactttgcgcgactaat 327  Q
    ||||||||||| | || ||||| || ||||||||| ||||||||||||||||||||    
T  11196567 tccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcgcgactaat 11196622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 72 - 327
Target Start/End: Original strand, 11199357 - 11199612
Alignment:
Q  72 cactcaacatagcagcgtggacagcagcgccatatacaaccgccttatcagcattgatgcttttgcataatttcttctcaccaaagaaaccactcaaacg 171  Q
    ||||||| |||| ||| |||||||||||||||||| | ||||||| |||  |||||||||||||||||||   |||| | || |||||| ||||||        
T  11199357 cactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccat 11199456  T
Q  172 tcgatgcagctttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatc 271  Q
    | | ||||  |||||||||||||||||||| |||||||| |||||||||||||||  ||||||| |||||||||||||   || ||||||||||||||||    
T  11199457 ttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttctacaatc 11199556  T
Q  272 tccatgcactttttgatgtgatgctcgttgagttcttcaaactttgcgcgactaat 327  Q
    ||||||||||| | || ||||| || ||||||||| ||||||||||||||||||||    
T  11199557 tccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcgcgactaat 11199612  T

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Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 72 - 327
Target Start/End: Original strand, 11160781 - 11161036
Alignment:
Q  72 cactcaacatagcagcgtggacagcagcgccatatacaaccgccttatcagcattgatgcttttgcataatttcttctcaccaaagaaaccactcaaacg 171  Q
    ||||||| |||| ||| |||||||||||||||||| | || |||| |||  |||||||||||||||||||   |||| | || |||||| ||||||        
T  11160781 cactcaatatagaagcatggacagcagcgccatatgccactgcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccat 11160880  T
Q  172 tcgatgcagctttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatc 271  Q
    | | ||||  |||||||||||||||||||| |||||||| |||||||||||||||  ||||||| |||||||||||||   || ||||||||||||||||    
T  11160881 ttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttctacaatc 11160980  T
Q  272 tccatgcactttttgatgtgatgctcgttgagttcttcaaactttgcgcgactaat 327  Q
    ||||||||||| | || ||||| || ||||||||| ||||||||||||||||||||    
T  11160981 tccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcgcgactaat 11161036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 72 - 327
Target Start/End: Original strand, 11155914 - 11156169
Alignment:
Q  72 cactcaacatagcagcgtggacagcagcgccatatacaaccgccttatcagcattgatgcttttgcataatttcttctcaccaaagaaaccactcaaacg 171  Q
    ||||||| |||| ||| |||||||||||||||||| | ||||||| |||  |||||||||||||||||||   |||| | || |||||| ||||||        
T  11155914 cactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccat 11156013  T
Q  172 tcgatgcagctttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatc 271  Q
    | | ||||  ||||||||||| |||||||| |||||||| |||||||||||||||  ||||||| |||||||||||||   || ||||||||| ||||||    
T  11156014 ttgttgcacttttacaatcctggtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatc 11156113  T
Q  272 tccatgcactttttgatgtgatgctcgttgagttcttcaaactttgcgcgactaat 327  Q
    ||||||||||| | || ||||| || ||||||||| ||||||||||| ||||||||    
T  11156114 tccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcacgactaat 11156169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 72 - 327
Target Start/End: Complemental strand, 11241947 - 11241692
Alignment:
Q  72 cactcaacatagcagcgtggacagcagcgccatatacaaccgccttatcagcattgatgcttttgcataatttcttctcaccaaagaaaccactcaaacg 171  Q
    ||||||| |||| ||| |||||| ||||||||||| | || |||| |||  |||||||||||||||||||   |||| | || |||||| ||||||        
T  11241947 cactcaatatagaagcatggacaacagcgccatatgccacagcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccat 11241848  T
Q  172 tcgatgcagctttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatc 271  Q
    | | ||||  |||||||||||| ||||||| |||||||| |||||||||||||||  ||||||| |||||||||||||   || ||||||||| ||||||    
T  11241847 ttgttgcacttttacaatcctaatagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatc 11241748  T
Q  272 tccatgcactttttgatgtgatgctcgttgagttcttcaaactttgcgcgactaat 327  Q
    ||||||||||| | || ||||| || ||||||||| ||||||||||||||||||||    
T  11241747 tccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcgcgactaat 11241692  T

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Target: chr6; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 152 - 281
Target Start/End: Original strand, 11209116 - 11209245
Alignment:
Q  152 ccaaagaaaccactcaaacgtcgatgcagctttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcct 251  Q
    ||||||||| || ||||| || | ||||  ||||||||||| ||||| |||||||||||||||||||||||||||| |||||| || ||||||||||| |    
T  11209116 ccaaagaaatcaatcaaaagttgttgcacttttacaatcctggtagacccgccaacaagcacaacatcatgaatgttactcttcactatcccactatctt 11209215  T
Q  252 ctagacacttttctacaatctccatgcact 281  Q
    ||| ||||||||||||||||||||||||||    
T  11209216 ctatacacttttctacaatctccatgcact 11209245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 152 - 280
Target Start/End: Original strand, 11170294 - 11170422
Alignment:
Q  152 ccaaagaaaccactcaaacgtcgatgcagctttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcct 251  Q
    ||||||||| || |||||||| | ||||  ||||||||||| |||||||||||||||||||||||||||||||| | |||||| || ||||||||||| |    
T  11170294 ccaaagaaatcaatcaaacgttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaattttactcttcactatcccactatctt 11170393  T
Q  252 ctagacacttttctacaatctccatgcac 280  Q
    ||| ||||||||||||| |||||||||||    
T  11170394 ctatacacttttctacactctccatgcac 11170422  T

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Target: chr6; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 11275708 - 11275807
Alignment:
Q  182 tttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatctccatgcact 281  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||   |||||||||||  ||| ||||||||||||||| ||||||||||    
T  11275708 tttacaatcctggtagacccgccaacaagcacaacatcatgaatgttactcttgtttatcccactatctgctatacacttttctacaatttccatgcact 11275807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 182 - 327
Target Start/End: Original strand, 11132748 - 11132893
Alignment:
Q  182 tttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatctccatgcact 281  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||   ||||||| ||| ||| |||||   ||||||||||||  |||||||||| ||||    
T  11132748 tttacaatcctcgtagacccgccaacaaggacaacatcatgaatactactcttgtccaacccgctatctattagacacttttccgcaatctccatacact 11132847  T
Q  282 ttttgatgtgatgctcgttgagttcttcaaactttgcgcgactaat 327  Q
    | |||| |||||  | ||||| ||||||||||||||| ||||||||    
T  11132848 tgttgaagtgattattgttgacttcttcaaactttgctcgactaat 11132893  T

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Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 11199716 - 11199787
Alignment:
Q  256 acacttttctacaatctccatgcactttttgatgtgatgctcgttgagttcttcaaactttgcgcgactaat 327  Q
    ||||||||||||||||||||||||||| | || || || || ||||||||| ||||||||||||||||||||    
T  11199716 acacttttctacaatctccatgcacttgtcgaagtcattcttgttgagttcctcaaactttgcgcgactaat 11199787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 11275583 - 11275652
Alignment:
Q  72 cactcaacatagcagcgtggacagcagcgccatatacaaccgccttatcagcattgatgcttttgcataa 141  Q
    ||||||| |||  ||| |||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  11275583 cactcaatataaaagcatggatagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataa 11275652  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 11209038 - 11209090
Alignment:
Q  89 tggacagcagcgccatatacaaccgccttatcagcattgatgcttttgcataa 141  Q
    |||||||||||||||||| |||| |||| ||| |||||||||||||| |||||    
T  11209038 tggacagcagcgccatatgcaactgcctcatctgcattgatgcttttacataa 11209090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 11170216 - 11170268
Alignment:
Q  89 tggacagcagcgccatatacaaccgccttatcagcattgatgcttttgcataa 141  Q
    |||||||||||||||||| ||||||||| |||  |||||||| |||| |||||    
T  11170216 tggacagcagcgccatatgcaaccgcctcatctacattgatgtttttacataa 11170268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 642 - 741
Alignment:
Q  182 tttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatctccatgcact 281  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| || |||||||   |||||||||||  ||| ||| ||||||||| ||||||||||||    
T  642 tttacaatccttgtagagccgccaacaaggacaacatcatgaaagttactcttgtttatcccactatctgctatacagttttctacactctccatgcact 741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 546 - 586
Alignment:
Q  101 ccatatacaaccgccttatcagcattgatgcttttgcataa 141  Q
    |||||| ||||||||| ||| ||||||||||||||||||||    
T  546 ccatatgcaaccgcctcatctgcattgatgcttttgcataa 586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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