View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15311_low_18 (Length: 392)
Name: NF15311_low_18
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 21 - 377
Target Start/End: Complemental strand, 25671487 - 25671131
Alignment:
| Q |
21 |
agcagcaacactagttggtttacaaagcatgccaggactagtaattctctatgcaagcatagtgaaaaagaaatgggcagtgaattcagctttcatggca |
120 |
Q |
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| T |
25671487 |
agcagcaacactagttggtttacaaagcatgccaggactagtaattctctatgcaagcatagtgaaaaagaaatgggcagtgaattcagctttcatggca |
25671388 |
T |
|
| Q |
121 |
ctatatgcttttgcagcagttttaatctgttgggttcttgttgcttatagaatggcttttggtgacgaacttttaccgttctggggtaaaggtgcaccgg |
220 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
25671387 |
ctatatgcttttgcagcagtattaatctgttgggttcttgttgcttatagaatggcttttggtgatgaacttttacctttctggggtaaaggtgcaccgg |
25671288 |
T |
|
| Q |
221 |
ctttaggacaaaaatttcttgttgctagagcgaaagtacctgcaagtactcactattacaagaatggtgttgatattgaaacacctatggaagaaccnnn |
320 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25671287 |
ctttaggacaaaaatttcttgttgctagagcaaaagtacctgcaagtactcactattacaagaatggtgttgatattgaaacacctatggaagaaccttt |
25671188 |
T |
|
| Q |
321 |
nnnncctatggcttcacttgtttattttcagtttacttttgctgctattactatgat |
377 |
Q |
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| T |
25671187 |
ttttcctatggcttcacttgtttattttcagtttacttttgctgctattactatgat |
25671131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 5625695 - 5625476
Alignment:
| Q |
21 |
agcagcaacactagttggtttacaaagcatgccaggactagtaattctctatgcaagcatagtgaaaaagaaatgggcagtgaattcagctttcatggca |
120 |
Q |
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| T |
5625695 |
agcatcaaccctagttggtctacaaagcatgccaggtcttgtaattctctatgcaagtatggtcaaaaagaaatgggctatgaattcagctttcatggca |
5625596 |
T |
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| Q |
121 |
ctatatgcttttgcagcagttttaatctgttgggttcttgttgcttatagaatggcttttggtgacgaacttttaccgttctggggtaaaggtgcaccgg |
220 |
Q |
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|| ||||||| |||| |||| |||| |||||||||||| | ||| | |||||||||||||| |||||||| || || ||||||||||||||||| |
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| T |
5625595 |
ctttatgcttatgcatcagtgctaatatgttgggttcttttatgttaccgtatggcttttggtgatgaactttttccattttggggtaaaggtgcacctt |
5625496 |
T |
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| Q |
221 |
ctttaggacaaaaatttctt |
240 |
Q |
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| T |
5625495 |
cattaggtcaaaaatttctt |
5625476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 5625394 - 5625347
Alignment:
| Q |
325 |
cctatggcttcacttgtttattttcagtttacttttgctgctattact |
372 |
Q |
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|||||||||||||||||||||||||| || | |||||||||||||||| |
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| T |
5625394 |
cctatggcttcacttgtttattttcaattcaattttgctgctattact |
5625347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 39726926 - 39726730
Alignment:
| Q |
43 |
caaagcatgccaggactagtaattctctatgcaagcatagtgaaaaagaaatgggcagtgaattcagctttcatggcactatatgcttttgcagcagttt |
142 |
Q |
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|||||||||||||||||||| || ||||||| ||||||||||||||||||||||| || || || ||||||||||| || || ||||| || || ||| |
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| T |
39726926 |
caaagcatgccaggactagttatcctctatggcagcatagtgaaaaagaaatgggctgtaaactctgctttcatggctctctacgctttcgcggcggtta |
39726827 |
T |
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| Q |
143 |
taatctgttgggtt-cttgttgcttatagaatggcttttggtgacgaacttttaccgttctggggtaaaggtgcaccggctttaggacaaaaatttct |
239 |
Q |
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| T |
39726826 |
taatctgttgggttacatg-ggcttataagatgtcatttggtgaaaaacttttacccttttggggtaaagctggccctgctttaggccagaaatttct |
39726730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 13350291 - 13350166
Alignment:
| Q |
85 |
aaaaagaaatgggcagtgaattcagctttcatggcactatatgcttttgcagcagttttaatctgttgggttcttgttgcttatagaatggcttttggtg |
184 |
Q |
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|||||||||||||||||||||||||| |||||| |||| ||||| |||||| || || ||||||||||| || |||||||||||| | ||||||| |
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| T |
13350291 |
aaaaagaaatgggcagtgaattcagcattcatgtcactctatgcatttgcatgtgtatttttctgttgggttttttgggcttatagaatgtcatttggtg |
13350192 |
T |
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| Q |
185 |
acgaacttttaccgttctggggtaaa |
210 |
Q |
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| T |
13350191 |
atacactttttccattttggggtaaa |
13350166 |
T |
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