View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15311_low_22 (Length: 377)

Name: NF15311_low_22
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15311_low_22
NF15311_low_22
[»] chr3 (20 HSPs)
chr3 (19-373)||(1360830-1361184)
chr3 (110-157)||(31788999-31789046)
chr3 (109-154)||(3054993-3055038)
chr3 (110-155)||(10499140-10499185)
chr3 (109-158)||(16991541-16991590)
chr3 (110-155)||(26871535-26871580)
chr3 (112-157)||(42799776-42799821)
chr3 (110-146)||(8051214-8051250)
chr3 (110-157)||(31520634-31520681)
chr3 (110-157)||(34844371-34844418)
chr3 (110-157)||(53863896-53863943)
chr3 (110-156)||(9832497-9832543)
chr3 (110-144)||(24459990-24460024)
chr3 (110-156)||(40268489-40268535)
chr3 (110-168)||(47079701-47079759)
chr3 (104-157)||(40286886-40286939)
chr3 (117-157)||(2667869-2667909)
chr3 (110-146)||(27923083-27923119)
chr3 (110-146)||(36720381-36720417)
chr3 (109-157)||(42430334-42430381)
[»] chr4 (13 HSPs)
chr4 (110-157)||(37720243-37720290)
chr4 (110-157)||(29195095-29195142)
chr4 (110-157)||(51250551-51250598)
chr4 (109-146)||(9241065-9241102)
chr4 (109-146)||(19238617-19238654)
chr4 (110-155)||(55427231-55427276)
chr4 (109-157)||(37109380-37109428)
chr4 (110-157)||(21344817-21344864)
chr4 (110-157)||(27965539-27965586)
chr4 (114-157)||(37980176-37980219)
chr4 (110-157)||(56409951-56409998)
chr4 (109-158)||(37443701-37443750)
chr4 (113-157)||(39030142-39030186)
[»] chr1 (10 HSPs)
chr1 (109-157)||(15581170-15581218)
chr1 (109-157)||(9165224-9165272)
chr1 (110-146)||(19528367-19528403)
chr1 (110-157)||(37046985-37047032)
chr1 (110-157)||(40257399-40257446)
chr1 (110-156)||(24857860-24857906)
chr1 (109-146)||(52116821-52116858)
chr1 (110-158)||(5711469-5711517)
chr1 (110-146)||(31794304-31794340)
chr1 (107-155)||(37310007-37310055)
[»] chr8 (14 HSPs)
chr8 (110-157)||(22268962-22269009)
chr8 (110-157)||(26688865-26688912)
chr8 (109-157)||(6530806-6530854)
chr8 (110-158)||(18540298-18540346)
chr8 (110-157)||(968362-968409)
chr8 (110-157)||(16852340-16852387)
chr8 (112-157)||(2203494-2203539)
chr8 (112-157)||(3624582-3624627)
chr8 (109-146)||(23874422-23874459)
chr8 (110-155)||(32157191-32157236)
chr8 (110-146)||(6436595-6436631)
chr8 (110-146)||(8484999-8485035)
chr8 (110-146)||(19703527-19703563)
chr8 (110-146)||(29431011-29431047)
[»] chr7 (23 HSPs)
chr7 (110-157)||(31835192-31835239)
chr7 (107-157)||(25021364-25021414)
chr7 (108-157)||(26459439-26459488)
chr7 (112-157)||(44628212-44628257)
chr7 (109-157)||(5579263-5579311)
chr7 (109-157)||(25956321-25956369)
chr7 (110-146)||(41487362-41487398)
chr7 (109-157)||(42836030-42836078)
chr7 (109-157)||(45559199-45559247)
chr7 (109-157)||(48771937-48771985)
chr7 (110-157)||(5273619-5273666)
chr7 (110-157)||(30579335-30579382)
chr7 (110-157)||(48125203-48125250)
chr7 (109-155)||(39631843-39631889)
chr7 (110-160)||(47274147-47274197)
chr7 (109-146)||(43590906-43590943)
chr7 (110-155)||(48039678-48039723)
chr7 (109-145)||(6426093-6426129)
chr7 (109-157)||(7801179-7801227)
chr7 (113-157)||(15905702-15905746)
chr7 (109-157)||(22760862-22760910)
chr7 (110-146)||(23301642-23301678)
chr7 (110-146)||(39499759-39499795)
[»] chr5 (5 HSPs)
chr5 (110-157)||(16457810-16457857)
chr5 (101-155)||(21589279-21589333)
chr5 (110-157)||(21549166-21549213)
chr5 (108-157)||(32670656-32670705)
chr5 (109-157)||(29075780-29075828)
[»] chr2 (11 HSPs)
chr2 (110-158)||(342395-342443)
chr2 (109-157)||(32106565-32106613)
chr2 (110-146)||(37480075-37480111)
chr2 (110-157)||(42327424-42327471)
chr2 (110-157)||(42602554-42602601)
chr2 (246-301)||(43963866-43963921)
chr2 (108-146)||(23052563-23052601)
chr2 (110-154)||(3697431-3697475)
chr2 (110-146)||(7799075-7799111)
chr2 (109-157)||(16525177-16525225)
chr2 (113-157)||(30359657-30359701)
[»] scaffold0258 (1 HSPs)
scaffold0258 (110-157)||(15352-15399)
[»] chr6 (5 HSPs)
chr6 (110-157)||(12188332-12188379)
chr6 (110-157)||(33549104-33549151)
chr6 (114-146)||(6776647-6776679)
chr6 (110-146)||(21418470-21418506)
chr6 (109-145)||(30127399-30127435)
[»] scaffold0417 (1 HSPs)
scaffold0417 (110-156)||(10219-10265)
[»] scaffold0026 (1 HSPs)
scaffold0026 (253-302)||(97367-97416)


Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 1360830 - 1361184
Alignment:
Q  19 atgcatttattgaataagataagcgcttgttgaagaagtgcttaattaagtttaaaaggaagtaatacgattaaatattcacttgtgaagtaacccactt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1360830 atgcatttattgaataagataagcgcttgttgaagaagtgcttaattaagtttaaaaggaagtaatacgattaaatattcacttgtgaagtaacccactt 1360929  T
Q  119 gggttggcctggtgttattggcttgggagcttggagtgtattactcttaaagtatactatcaaggtccgattcccaccggtgcgtagagcttttctccag 218  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1360930 gggttggcctggtgttattggcttgggagcttagagtgtattactcttaaagtatactatcaaggtccgattcccaccggtgcgtagagcttttctccag 1361029  T
Q  219 ctctagctttaaatggcaccttacaaatggacgatgggattggacctctccgattagttggtttttggactggataccgagtttagaaacaaacnnnnnn 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||          
T  1361030 ctctagctttaaatggcaccttacaaatggacgatgggattggacctctccaattagttggtttttggactggataccgagtttagaaacaaacaaaaaa 1361129  T
Q  319 nnntattgaaaagtccaaagatttaagttcagcactacctgttccatcgcaccta 373  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1361130 atatattgaaaagtccaaagatttaagttcagcactacctgttccatcgcaccta 1361184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 31789046 - 31788999
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||    
T  31789046 aacccacttgggttggcctagtgttattggcttgggatctgggagtgt 31788999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 3054993 - 3055038
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggag 154  Q
    |||||||||||||||||||||||| | ||||||||||| |||||||    
T  3054993 taacccacttgggttggcctggtggtgttggcttgggaccttggag 3055038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 10499185 - 10499140
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagt 155  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||    
T  10499185 aacccacttgggttggcctggtggtattggcttgggatctgggagt 10499140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 16991541 - 16991590
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgta 158  Q
    ||||||| |||||||||||||||| ||||||||||||| || ||||||||    
T  16991541 taacccatttgggttggcctggtggtattggcttgggatctgggagtgta 16991590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 26871580 - 26871535
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagt 155  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||||    
T  26871580 aacccacttgggttggcctggtggtgttggcttgggaccttggagt 26871535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 42799821 - 42799776
Alignment:
Q  112 cccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||||| | ||||||||||| ||||||||||    
T  42799821 cccacttgggttggcctggtggtgttggcttgggaccttggagtgt 42799776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 8051214 - 8051250
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||||||||||||||||||| |||||||||||||    
T  8051214 aacccacttgggttggcctggtggtattggcttggga 8051250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 31520681 - 31520634
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||||||||||  |||||||||||| || |||||||    
T  31520681 aacccacttgggttggcctggtggcattggcttgggatctgggagtgt 31520634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 34844371 - 34844418
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  34844371 aacccacttgggttgccctggtgttgttggcttgagaccttggagtgt 34844418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 53863943 - 53863896
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||| ||||||| | ||||||||||| ||||||||||    
T  53863943 aacccacttgggttgtcctggtgatgttggcttgggaccttggagtgt 53863896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 9832497 - 9832543
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtg 156  Q
    |||||||||||||||||| |||| ||||||||||||| || ||||||    
T  9832497 aacccacttgggttggcccggtggtattggcttgggacctgggagtg 9832543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 24459990 - 24460024
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgg 144  Q
    ||||||||||||||||||||||| |||||||||||    
T  24459990 aacccacttgggttggcctggtggtattggcttgg 24460024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 40268489 - 40268535
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtg 156  Q
    |||||||||||||| |||||||| | ||||||||||| |||||||||    
T  40268489 aacccacttgggtttgcctggtggtgttggcttgggaccttggagtg 40268535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 47079701 - 47079759
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgtattactcttaa 168  Q
    |||||||||||||||| |||||| | ||||||||||| |||||| ||| || |||||||    
T  47079701 aacccacttgggttggtctggtggtgttggcttgggatcttggaatgtgttcctcttaa 47079759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 40286939 - 40286886
Alignment:
Q  104 tgaagtaacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||||||||| |||||| | || ||||| || ||||||||||    
T  40286939 tgaagtaacccacttgggttggtctggtggtgttcgcttgagatcttggagtgt 40286886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 2667869 - 2667909
Alignment:
Q  117 ttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||| ||||||||||||| || |||||||    
T  2667869 ttgggttggcctggtggtattggcttgggatctgggagtgt 2667909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 27923119 - 27923083
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  27923119 aacccacttaggttggcctggtggtattggcttggga 27923083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 36720381 - 36720417
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttggga 146  Q
    |||||||||||||||| |||||| |||||||||||||    
T  36720381 aacccacttgggttggtctggtggtattggcttggga 36720417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 42430334 - 42430381
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||| |||||| ||||| ||||||| ||||||||||    
T  42430334 taacccacttgggttgg-ctggtggtattgacttgggatcttggagtgt 42430381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 37720290 - 37720243
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||    
T  37720290 aacccacttgggttggcctggtgttattggcttgggacctgggagtgt 37720243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 29195095 - 29195142
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  29195095 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgt 29195142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 51250598 - 51250551
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||||    
T  51250598 aacccacttgggttggcctggtggtattggcttgggatctgggagtgt 51250551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 9241102 - 9241065
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttggga 146  Q
    |||||||||||||||||||||||| |||||||||||||    
T  9241102 taacccacttgggttggcctggtggtattggcttggga 9241065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 19238654 - 19238617
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttggga 146  Q
    |||||||||||||||||||||||| |||||||||||||    
T  19238654 taacccacttgggttggcctggtggtattggcttggga 19238617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 55427276 - 55427231
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagt 155  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||    
T  55427276 aacccacttgggttggcctggtggtattggcttgggacctgggagt 55427231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 37109428 - 37109380
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  37109428 taacccacttgggttggcctagtggtattggcttgggacctgggagtgt 37109380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 21344817 - 21344864
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||||||| || | ||||||||||| ||||||||||    
T  21344817 aacccacttgggttggcctgatgatgttggcttgggaccttggagtgt 21344864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 27965586 - 27965539
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  27965586 aacccacttgggttggcctagtggtattggcttgggatctgggagtgt 27965539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 37980219 - 37980176
Alignment:
Q  114 cacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||    
T  37980219 cacttgggttggcctggtgatgttggcttgggaccttggagtgt 37980176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 56409951 - 56409998
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||| |||||||||| | ||||||||||| ||||||||||    
T  56409951 aacccacttgggctggcctggtgctgttggcttgggaccttggagtgt 56409998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 37443701 - 37443750
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgta 158  Q
    |||||||||||||||| ||| ||| ||||||||||||| || ||||||||    
T  37443701 taacccacttgggttgacctagtggtattggcttgggatctgggagtgta 37443750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 39030186 - 39030142
Alignment:
Q  113 ccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||| |||||||||||||| | ||||||||||| ||||||||||    
T  39030186 ccactggggttggcctggtggtgttggcttgggaccttggagtgt 39030142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 15581218 - 15581170
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  15581218 taacccacttgggttggcctggtggtgttggcttgggaccttggagtgt 15581170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 9165272 - 9165224
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  9165272 taacccacttgggttggcctagtggtattggcttgggacctgggagtgt 9165224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 19528403 - 19528367
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||||||||||||||||||| |||||||||||||    
T  19528403 aacccacttgggttggcctggtggtattggcttggga 19528367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 37046985 - 37047032
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||| |||||| | ||||||||||| ||||||||||    
T  37046985 aacccacttgggttggtctggtggtgttggcttgggaccttggagtgt 37047032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 40257399 - 40257446
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||||||| |||||||||| || || |||||||    
T  40257399 aacccacttgggttggcctggtggtattggcttgagacctgggagtgt 40257446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 24857906 - 24857860
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtg 156  Q
    ||||||||||||||||||||||| | |||||| |||| |||||||||    
T  24857906 aacccacttgggttggcctggtggtgttggctagggaccttggagtg 24857860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 52116858 - 52116821
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  52116858 taacccagttgggttggcctggtggtattggcttggga 52116821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 5711517 - 5711469
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgta 158  Q
    ||||||||||||||  ||||||| | || ||||||||||||||||||||    
T  5711517 aacccacttgggttcacctggtggtgttagcttgggagcttggagtgta 5711469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 31794340 - 31794304
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  31794340 aacccacttgggttggcctagtggtattggcttggga 31794304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 37310055 - 37310007
Alignment:
Q  107 agtaacccacttgggttggcctggtgttattggcttgggagcttggagt 155  Q
    |||||||||||||||||||||||||| |||| |||| ||| || |||||    
T  37310055 agtaacccacttgggttggcctggtggtattagcttcggatctgggagt 37310007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 22269009 - 22268962
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  22269009 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgt 22268962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 26688865 - 26688912
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  26688865 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgt 26688912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 6530806 - 6530854
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||||||||||| | ||||||||||| || |||||||    
T  6530806 taacccacttgggttggcctggtggtgttggcttgggacctaggagtgt 6530854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 18540298 - 18540346
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgta 158  Q
    ||||||||||||||||||| ||| ||||||||||||| || ||||||||    
T  18540298 aacccacttgggttggcctagtggtattggcttgggacctgggagtgta 18540346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 968362 - 968409
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||| |||||||||||| ||||||||||||| || |||||||    
T  968362 aacccacttgagttggcctggtggtattggcttgggacctgggagtgt 968409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 16852340 - 16852387
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  16852340 aacccacttgggttggcctagtggtattggcttgggacctgggagtgt 16852387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 2203494 - 2203539
Alignment:
Q  112 cccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||| ||| ||||||||||||| || |||||||    
T  2203494 cccacttgggttggcctagtggtattggcttgggacctgggagtgt 2203539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 3624582 - 3624627
Alignment:
Q  112 cccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||| ||| ||||||||||||| || |||||||    
T  3624582 cccacttgggttggcctagtggtattggcttgggacctgggagtgt 3624627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 23874459 - 23874422
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttggga 146  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  23874459 taacccacttgggttggcctagtggtattggcttggga 23874422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 32157191 - 32157236
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagt 155  Q
    |||||| |||||||||||||||| ||||| ||||||| ||||||||    
T  32157191 aacccatttgggttggcctggtggtattgacttgggaccttggagt 32157236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 6436631 - 6436595
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  6436631 aacccacttgggttgccctggtggtattggcttggga 6436595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 8484999 - 8485035
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  8484999 aacccacttgggttggcctggtggtatttgcttggga 8485035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 19703563 - 19703527
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  19703563 aacccacttgggttggcctagtggtattggcttggga 19703527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 29431011 - 29431047
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||||||||||||||||| | |||||||||||||    
T  29431011 aacccacttgggttggcctggcggtattggcttggga 29431047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 31835192 - 31835239
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||||    
T  31835192 aacccacttgggttggcctggtggtgttggcttgggtgcttggagtgt 31835239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 25021414 - 25021364
Alignment:
Q  107 agtaacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  25021414 agtaacccacttgggttggcctagtggtattggcttgggacctgggagtgt 25021364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 26459488 - 26459439
Alignment:
Q  108 gtaacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  26459488 gtaacccacttgggttggcctagtggtattggcttgggacctgggagtgt 26459439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 44628257 - 44628212
Alignment:
Q  112 cccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||    
T  44628257 cccacttgggttggcctggtgttgttagcttgggaccttggagtgt 44628212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 5579311 - 5579263
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||| ||||||| | ||||||||||| ||||||||||    
T  5579311 taacccacttgggttgacctggtggtgttggcttgggaccttggagtgt 5579263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 25956369 - 25956321
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||| |||||||||||| ||| ||||||||||||| ||||||||||    
T  25956369 taacccatttgggttggcctagtggtattggcttgggaccttggagtgt 25956321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 41487362 - 41487398
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||||||||||||||||||| |||||||||||||    
T  41487362 aacccacttgggttggcctggtggtattggcttggga 41487398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 42836078 - 42836030
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  42836078 taacccacttgggttggcctagtggtattggcttgggacctgggagtgt 42836030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 45559199 - 45559247
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||||||| ||| ||||||||||| | ||||||||||    
T  45559199 taacccacttgggttggcctagtggtattggcttggaaccttggagtgt 45559247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 48771937 - 48771985
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||||| ||||| ||||||||||||| || |||||||    
T  48771937 taacccacttgggttggcttggtggtattggcttgggatctgggagtgt 48771985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 5273666 - 5273619
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||||||| | ||||||||||| ||| ||||||    
T  5273666 aacccacttgggttggcctggtggtgttggcttgggaccttagagtgt 5273619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 30579335 - 30579382
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||||||| |||||||||| || || |||||||    
T  30579335 aacccacttgggttggcctggtggtattggcttgagacctgggagtgt 30579382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 48125250 - 48125203
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||| |||||| | ||||||||||| ||||||||||    
T  48125250 aacccacttgggttggtctggtggtgttggcttgggaccttggagtgt 48125203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 39631843 - 39631889
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagt 155  Q
    |||||||||||||||||||| ||| ||||||||||||| || |||||    
T  39631843 taacccacttgggttggcctagtggtattggcttgggacctgggagt 39631889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 47274147 - 47274197
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgtatt 160  Q
    |||||||||||||||| |||||||| || |||||||  |||||||||||||    
T  47274147 aacccacttgggttggtctggtgttgttagcttgggttcttggagtgtatt 47274197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 43590906 - 43590943
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  43590906 taacccagttgggttggcctggtggtattggcttggga 43590943  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 48039723 - 48039678
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagt 155  Q
    ||||||||||||||||||||||| | |||||||| || ||||||||    
T  48039723 aacccacttgggttggcctggtggtgttggcttgcgatcttggagt 48039678  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 6426129 - 6426093
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttggg 145  Q
    |||||||||||||||||||||||| | ||||||||||    
T  6426129 taacccacttgggttggcctggtggtgttggcttggg 6426093  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 7801179 - 7801227
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||| ||||||||||| ||||| ||||||| || |||||||    
T  7801179 taacccacttggtttggcctggtggtattgacttgggacctgggagtgt 7801227  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 15905746 - 15905702
Alignment:
Q  113 ccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||||| | ||||||||||||| || |||||||    
T  15905746 ccacttgggttggcctggcggtattggcttgggacctgggagtgt 15905702  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 22760862 - 22760910
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||| |||||| ||||| ||||||| || |||||||    
T  22760862 taacccacttgggttggtctggtggtattgacttgggacctgggagtgt 22760910  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 23301678 - 23301642
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  23301678 aacccacttgggttggcctggtggtattgacttggga 23301642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 39499795 - 39499759
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  39499795 aacccacttgggttggcctagtggtattggcttggga 39499759  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 16457810 - 16457857
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||||    
T  16457810 aacccacttaggttggcctggtggtattggcttgggaccttggagtgt 16457857  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 21589279 - 21589333
Alignment:
Q  101 ttgtgaagtaacccacttgggttggcctggtgttattggcttgggagcttggagt 155  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||| || |||||    
T  21589279 ttgttaaggaacccacttgggttggcctggtggtattggcttgggacctgggagt 21589333  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 21549213 - 21549166
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  21549213 aacccacttgggttggcctagtggtattggcttgggacctgggagtgt 21549166  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 32670705 - 32670656
Alignment:
Q  108 gtaacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||| ||||||||||||||| ||||||||| |||  |||||||||    
T  32670705 gtaacccacctgggttggcctggtggtattggcttaggattttggagtgt 32670656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 29075780 - 29075828
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||| |||| ||| ||||||||||||| || |||||||    
T  29075780 taacccacttgggtttgcctagtggtattggcttgggatctgggagtgt 29075828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 342395 - 342443
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgta 158  Q
    ||||||||||||||||||||||| | |||||||| || |||||||||||    
T  342395 aacccacttgggttggcctggtggtgttggcttgtgaccttggagtgta 342443  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 32106565 - 32106613
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||||||||||| | ||| ||||||| ||||||||||    
T  32106565 taacccacttgggttggcctggtggtgttgacttgggaccttggagtgt 32106613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 37480075 - 37480111
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||||||||||||||||||| |||||||||||||    
T  37480075 aacccacttgggttggcctggtggtattggcttggga 37480111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 42327471 - 42327424
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  42327471 aacccacttgggttggcctagtggtattggcttgggacctgggagtgt 42327424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 42602554 - 42602601
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  42602554 aacccacttgggttggcctagtggtattggcttgggacctgggagtgt 42602601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 43963921 - 43963866
Alignment:
Q  246 tggacgatgggattggacctctccgattagttggtttttggactggataccgagtt 301  Q
    |||||| |||||||||||| ||| |||||||||||  |||| ||||||||||||||    
T  43963921 tggacggtgggattggacccctcagattagttggtccttgggctggataccgagtt 43963866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 23052601 - 23052563
Alignment:
Q  108 gtaacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  23052601 gtaacccacttaggttggcctggtggtattggcttggga 23052563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 3697475 - 3697431
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggag 154  Q
    |||||||||||||||| ||| || ||||||||||||| |||||||    
T  3697475 aacccacttgggttggtctgatggtattggcttgggaccttggag 3697431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 7799111 - 7799075
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttggga 146  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  7799111 aacccacttgggttgtcctggtggtattggcttggga 7799075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 16525177 - 16525225
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||||| || | |||||||||||  |||||||||    
T  16525177 taacccacttgggttggcctgatggtgttggcttgggacgttggagtgt 16525225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 30359657 - 30359701
Alignment:
Q  113 ccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||| ||||| | ||||||||||| ||||||||||    
T  30359657 ccacttgggttggcttggtggtgttggcttgggaccttggagtgt 30359701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 15399 - 15352
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||| |||||| ||||||||||||| || |||||||    
T  15399 aacccacttgggttggtctggtggtattggcttgggacctgggagtgt 15352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 12188379 - 12188332
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  12188379 aacccacttgggttggcctagtggtattggcttgggacctgggagtgt 12188332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 33549104 - 33549151
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtgt 157  Q
    |||||||||||||||| |||||| ||||||||||||| || |||||||    
T  33549104 aacccacttgggttggtctggtggtattggcttgggacctgggagtgt 33549151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 6776679 - 6776647
Alignment:
Q  114 cacttgggttggcctggtgttattggcttggga 146  Q
    ||||||||||||||||||| |||||||||||||    
T  6776679 cacttgggttggcctggtggtattggcttggga 6776647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 21418470 - 21418506
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttggga 146  Q
    |||||| |||||||||||||||| |||||||||||||    
T  21418470 aacccagttgggttggcctggtggtattggcttggga 21418506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 30127399 - 30127435
Alignment:
Q  109 taacccacttgggttggcctggtgttattggcttggg 145  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  30127399 taacccacttgggttggtctggtggtattggcttggg 30127435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 10219 - 10265
Alignment:
Q  110 aacccacttgggttggcctggtgttattggcttgggagcttggagtg 156  Q
    |||||||||||||||||||| || ||||||||||||| || ||||||    
T  10219 aacccacttgggttggcctgatgatattggcttgggatctgggagtg 10265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 97416 - 97367
Alignment:
Q  253 tgggattggacctctccgattagttggtttttggactggataccgagttt 302  Q
    ||||||||| ||||||  |||||| ||||||||||| |||||||||||||    
T  97416 tgggattggtcctctcgtattagtcggtttttggaccggataccgagttt 97367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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