View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15311_low_23 (Length: 373)
Name: NF15311_low_23
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 46019386 - 46019746
Alignment:
| Q |
1 |
aggaccttaaaaggttcgcttctaccttcccgaatgcacgctccaattgaattagattgaactattttaacccctagccgaaattgaccggttcttctct |
100 |
Q |
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| T |
46019386 |
aggaccttaaaaggttcgcttctaccttcccgaatgcacgctccaattgaattagattgaactattttaacccctagccgaaattgaccggttcttctct |
46019485 |
T |
|
| Q |
101 |
ttgatatatctgtaaactcaatctctatgttgatatcagcaactccatttcttagtgtaatgattttatttcctttcagtagttgtccttttccaactct |
200 |
Q |
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| T |
46019486 |
ttgatatatctgtaaactcaatctctatgttgatatcagcaactccatttcttagtgtaatgattttatttcctttcagtagttgtccttttccaactct |
46019585 |
T |
|
| Q |
201 |
tggaggtacaatttgagtattaaactcctcagctgtccaatcctctttttcaaagtcaccatataggacacataattggatcttcatcgaggaaccttct |
300 |
Q |
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| T |
46019586 |
tggaggtacaatttgagtattaaactcctcagctgtccaatcctctttttcaaagtcaccatataggacacataattggatcttcatcgaggaaccttct |
46019685 |
T |
|
| Q |
301 |
tccctgactatgcgttgctgatttccagcatcacgcagttcaatttgaagcggttcatctc |
361 |
Q |
| |
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| T |
46019686 |
tccctgactatgcgttgctgatttccagcatcacgcagttcaatttgaagcggttcatctc |
46019746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 46032058 - 46032418
Alignment:
| Q |
1 |
aggaccttaaaaggttcgcttctaccttcccgaatgcacgctccaattgaattagattgaactattttaacccctagccgaaattgaccggttcttctct |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
46032058 |
aggaccttaaaaggttcgcttctaccttctcgaatgcacactccaattgaattagattgaactattttaacccctagccgaaattgaccgtttcttccct |
46032157 |
T |
|
| Q |
101 |
ttgatatatctgtaaactcaatctctatgttgatatcagcaactccatttcttagtgtaatgattttatttcctttcagtagttgtccttttccaactct |
200 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || |||||||||| |||| | ||||||| |||| |
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| T |
46032158 |
ttgatatatctgtaaactcaatctctttgtcgatatcagcaactccatttcttagtgtaatgaattcgtttcctttcaacagttcttcttttccctctct |
46032257 |
T |
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| Q |
201 |
tggaggtacaatttgagtattaaactcctcagctgtccaatcctctttttcaaagtcaccatataggacacataattggatcttcatcgaggaaccttct |
300 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
46032258 |
tggaggtgcaatttgagtattaaattcctcagctgtccaatcctctttttcaaagtcaccatataggacacataattggatcttcatggaggaaccctct |
46032357 |
T |
|
| Q |
301 |
tccctgactatgcgttgctgatttccagcatcacgcagttcaatttgaagcggttcatctc |
361 |
Q |
| |
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||| |||||| ||||||||||||| || |||||||||||||||||||||| |||||||||| |
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|
| T |
46032358 |
tccatgactacgcgttgctgattttcaacatcacgcagttcaatttgaagtggttcatctc |
46032418 |
T |
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