View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15311_low_28 (Length: 327)
Name: NF15311_low_28
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 45274045 - 45273918
Alignment:
| Q |
16 |
atacagtctacataaccacaaaagaggtttcattcccaatatcacaccatggctgcttccctcttcaccactctcttcttcactgctttccttatcgcat |
115 |
Q |
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| T |
45274045 |
atacagtctacataaccacaaaagaggtttcattcccaatatcacaccatggctgcttccctcttcaccactctcttcttcactgctttccttatcgcat |
45273946 |
T |
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| Q |
116 |
acactccaggtattcattattttcctcc |
143 |
Q |
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| T |
45273945 |
acactccaggtattcattattttcctcc |
45273918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 45273811 - 45273734
Alignment:
| Q |
250 |
acagtagtgaaggtatcagcagcatcagtagtattttgcagcaagtgtccccacccagtgtggccagcaatccaaccc |
327 |
Q |
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| T |
45273811 |
acagtagtgaaggtatcagcagcatcagtagtattttacaacaagtgtccccacccagtgtggccagcaattcaaccc |
45273734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 45273899 - 45273866
Alignment:
| Q |
162 |
cacagaaagcggtttgggtgggatatatagtaca |
195 |
Q |
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| T |
45273899 |
cacagaaagcggtttgggagggatatatagtaca |
45273866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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