View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15311_low_29 (Length: 315)
Name: NF15311_low_29
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_low_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 44657422 - 44657723
Alignment:
| Q |
1 |
acgcacttaatctccaacggagtgatgagtatcttttataaatacgatgagagagtaatatttatccttggtatttgttacgttaatttgtctttattca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44657422 |
acgcacttaatctgggacggagtgatgagtatcttttataaatactatgagagagtaatatttatccttggtatttgttacgttaatttgtctttattca |
44657521 |
T |
|
| Q |
101 |
cgtacgtcccaacgtgttattgaactccaaacttagatgcttagttcgaattgcataatttcactaaccatcagtccgaagttccgttcttataagcatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44657522 |
cgtacgtcccaacgtgttattgaactccaaacttagatgcttagttcgaattgcgtaatttcactaaccatcagtccgaagttccgttcttataagcatt |
44657621 |
T |
|
| Q |
201 |
gcaatgaatctcatccgagttccgccggatacctctgatagcaataacacaatctatttcgatgaaacattggatcacttgcttcaccaggagcttaatg |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44657622 |
gcaatgaatctcatcggagttccgccggatacctctgatagcaataacaccatctatttcgatgaaacattggatcacttgcttcaccaggagtttaatg |
44657721 |
T |
|
| Q |
301 |
at |
302 |
Q |
| |
|
|| |
|
|
| T |
44657722 |
at |
44657723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University