View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15311_low_39 (Length: 262)
Name: NF15311_low_39
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_low_39 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 5141258 - 5141501
Alignment:
| Q |
19 |
attcttacaatatcaaagaattggattcatgggttgatgatagagatagcaattgttgtgtttggaatagagtcaagtgcttttctggtcaaatagttga |
118 |
Q |
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| T |
5141258 |
attcttacaatatcaaagaattggattcatgggttgatgatagagatagcaattgttgtgtttggaatagagtcaagtgcttttctggtcaaatagttga |
5141357 |
T |
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| Q |
119 |
attatccatctatagtttaataaatgatttccctgatcctattatgttaaatgtttcattgttccgtccatttgaagagctacgcctcctcgacttgtcc |
218 |
Q |
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| T |
5141358 |
attatccatctatagtttaataaatgatttccctgatcctattatgttaaatgtttcattgttccgtccgtttgaagagctacgcctcctcaacttatcc |
5141457 |
T |
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| Q |
219 |
aagaaccatattcaaggctggattgacaacgaaggtactacttt |
262 |
Q |
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| T |
5141458 |
tccaaccatattcaaggctggattggcaacgaaggtactacttt |
5141501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 5178601 - 5178844
Alignment:
| Q |
19 |
attcttacaatatcaaagaattggattcatgggttgatgatagagatagcaattgttgtgtttggaatagagtcaagtgcttttctggtcaaatagttga |
118 |
Q |
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||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| |
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| T |
5178601 |
attcttataataacaaagaattgggttcatggattgatgatagagatagcaattgttgtgtttggaatagagtcaagtgctcttttggtcacatagttga |
5178700 |
T |
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| Q |
119 |
attatccatctatagtttaataaatgatttccctgatcctattatgttaaatgtttcattgttccgtccatttgaagagctacgcctcctcgacttgtcc |
218 |
Q |
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| T |
5178701 |
attatccatctatagtttactatatttgttccctgatcctaatatgttaaatgtttcattgttccgtccatttgaagagttacgtctcctcgacttgtcc |
5178800 |
T |
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| Q |
219 |
aagaaccatattcaaggctggattgacaacgaaggtactacttt |
262 |
Q |
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| T |
5178801 |
aagaacaatattcaaggttggattgacaacgaaggtactacttt |
5178844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 4846537 - 4846298
Alignment:
| Q |
19 |
attcttacaatatcaaagaattggattcatgggttgatgatagagatagcaattgttgtgtttggaatagagtcaagtgcttttctggtcaaatagttga |
118 |
Q |
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| T |
4846537 |
attcttataatgacaaagaattgggttcatgggttgatgatagagatagcaattgttgtgtttgggatagagtcgagtgctcttctggtcacataactga |
4846438 |
T |
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| Q |
119 |
attatccatctatagtttaataaatgatttccctgatcctattatgttaaatgtttcattgttccgtccatttgaagagctacgcctcctcgacttgtcc |
218 |
Q |
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| T |
4846437 |
attattctttgatcggttactattttggacctctgatcctaagatgttaaatgtttcactgttctgtccatttaaagagctacgcctcctcgacttgtcc |
4846338 |
T |
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| Q |
219 |
aagaaccatattcaaggctggattgacaacgaaggtacta |
258 |
Q |
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| ||| |||||||||||||||||| |||||||||||||| |
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| T |
4846337 |
gacaacgatattcaaggctggattggcaacgaaggtacta |
4846298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 5165412 - 5165661
Alignment:
| Q |
19 |
attcttacaatatcaaagaattggattcatgggttgatgatagagatagcaattgttgtgtttggaatagagtcaagtg---------cttttctggtca |
109 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||| |
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| T |
5165412 |
attcttataatatcaaagaattgggttcatgggttgatgatagagatagcaattgttgttcttggaaaagagtcaagtgctctaacacctcttctggtca |
5165511 |
T |
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| Q |
110 |
aatagttgaattatccatctatagtttaataaatgatttccctgatcctattatgttaaatgtttcattgttccgtccatttgaagagctacgcctcctc |
209 |
Q |
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| T |
5165512 |
cataactgaattatccctttacttgttactatttgagacccctgattctaagatgttaaatgtttcattgttccgtccatttgaagagctacgcctcctt |
5165611 |
T |
|
| Q |
210 |
gacttgtccaagaaccatattcaaggctggattgacaacgaaggtactac |
259 |
Q |
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| T |
5165612 |
gacttgtcctataactcctttcaaggttggattggcaatgaaggtactac |
5165661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 5192886 - 5192981
Alignment:
| Q |
164 |
gttaaatgtttcattgttccgtccatttgaagagctacgcctcctcgacttgtccaagaaccatattcaaggctggattgacaacgaaggtactac |
259 |
Q |
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| T |
5192886 |
gttaaatgtttcactattccgtccatttaaagagctacggctcctcgacttgtcctacaactcctttctaggctggattggcaacgaaggtactac |
5192981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 5192750 - 5192790
Alignment:
| Q |
37 |
aattggattcatgggttgatgatagagatagcaattgttgt |
77 |
Q |
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| T |
5192750 |
aattgggttcatgggttgatgatagagatagcaattgttgt |
5192790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 5205460 - 5205529
Alignment:
| Q |
33 |
aaagaattggattcatgggttgatgatagag---atagcaattgttgtgtttggaatagagtcaagtgct |
99 |
Q |
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| T |
5205460 |
aaagaattgagttcatgggttgatgatagagatcatagcaattgttgttcttggaaaagagtcaagtgct |
5205529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 5205600 - 5205657
Alignment:
| Q |
161 |
tatgttaaatgtttcattgttccgtccatttgaagagctacgcctcctcgacttgtcc |
218 |
Q |
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|||||||||| ||||| |||||||||||||||||||| |||| || ||||| |||||| |
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| T |
5205600 |
tatgttaaatatttcactgttccgtccatttgaagagttacgtcttctcgatttgtcc |
5205657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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