View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15311_low_6 (Length: 507)
Name: NF15311_low_6
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 5e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 233 - 444
Target Start/End: Complemental strand, 26237356 - 26237144
Alignment:
| Q |
233 |
acccaaacccttacccccatgataacatcctcttcctcttactaaaacccaaaaccctat--ttcatttcaccatttctgtcttgtttgcaaagacatca |
330 |
Q |
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| T |
26237356 |
acccaaaccccaacccccatgataacatcctcttcctcttgctaaaacccaaaaccctatatttcatttcaccatttctgtcttgtttgcaaagacatca |
26237257 |
T |
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| Q |
331 |
acaaaatgaatgttactcgttctgctttgaagctccatcttcaaaattcacccattcgctaccatcaattcttctttttctctcgattcaacaatgctct |
430 |
Q |
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| T |
26237256 |
a-aaaatgaatgttactcgttctgctttgaagctccatcttcaaaattcacccattcgctaccatcaatttttcttcttctctcgattcaacaatgctct |
26237158 |
T |
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| Q |
431 |
tattcgcaatccca |
444 |
Q |
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|||||||||||||| |
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| T |
26237157 |
tattcgcaatccca |
26237144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 26237482 - 26237416
Alignment:
| Q |
15 |
aacaacatgtatcaacaacaatactcaaaagtggatctgctgaatcacgtttgaaactatccaaaca |
81 |
Q |
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| T |
26237482 |
aacaacatgcgtcaacaacaatactcaaaagtggatctgctgaatcacgtttgaaactatccaaaca |
26237416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 26237422 - 26237376
Alignment:
| Q |
147 |
ccaaacaggcacttaatctaacggttatgaaagcatgttaagttggt |
193 |
Q |
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| T |
26237422 |
ccaaacaggcacttaatctaacggttatgaaagcatgttaagttggt |
26237376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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