View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15311_low_9 (Length: 464)
Name: NF15311_low_9
Description: NF15311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15311_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 14 - 446
Target Start/End: Complemental strand, 41445266 - 41444834
Alignment:
| Q |
14 |
agaggaaagaaagtgtgttcttatgggaagaaaaaggtggtgtgtaagattgaagattttgcctttgtttgattcaaaaccgtcaaagacaaaaatgtca |
113 |
Q |
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| T |
41445266 |
agaggaaagaaggtgtgttcttatgggaagaaaaaggtggtgtgtaagattgaagattttgcctttgtttgattcaaaaccgtcaaagacaaaaatgtca |
41445167 |
T |
|
| Q |
114 |
agtgtagccttgcctttattcttttcgcactttctctctccttctcaccatttgctttcggttctaaaataaaatgctttgtctagagctttagatcatt |
213 |
Q |
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| T |
41445166 |
agtgtagccttgcctttattcttttggtactttctctctccttctcaccatttgctttcggttctaaaataaaatgctttgtctagagctttagatcatt |
41445067 |
T |
|
| Q |
214 |
tatagatcaatagcttcctcctatggttaagtggaatctgataacataatgcactaggtcataaaagttctttttggtttgttttctcataaattttctc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41445066 |
tatagatcaatagcttcctcctatggttaagtggaatctgataacataatgcactaggtcataaaagttctttttggtttgttttctcatcaattttctc |
41444967 |
T |
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| Q |
314 |
ctatcaggtaatcttatttaagaaactatcactaattaaatatgaaatctctctcagcaattcgaacattggttcgacacgtgttccacaacattgtaaa |
413 |
Q |
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| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41444966 |
ccatcaggtaatcttatttaagaaactatcactaattaaacatgaaatctctctcaacaattcgaacattggttcgacacgtgttccacaacattgtaaa |
41444867 |
T |
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| Q |
414 |
ccaatagttatgcatcgaatcgtaaaccatgac |
446 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
41444866 |
ccaatagttatgcatcgagtcgtaaaccatgac |
41444834 |
T |
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