View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15312_high_6 (Length: 268)
Name: NF15312_high_6
Description: NF15312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15312_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 40355208 - 40355458
Alignment:
| Q |
1 |
caacaaatataagttgagaaaaggttgaaaaatcaaagggaggttagtaattttcggctttgaacgtgcaatgagtagacacagtagtcacagactgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
40355208 |
caacaaatataagttgagaaaaggttgaaaaatcaaagggaggttagtaattttcggctttgaatgtgcaatgagtagacacagtagtcacagactgctc |
40355307 |
T |
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| Q |
101 |
cccttgttggttaaaatagtctctgacgttaaaatatttcctttaacgccatgacctcagagctcttggagagttgaatcatggtcggttaacgtgcata |
200 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || |
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| T |
40355308 |
cccttgttagttaaaatagtctctgacgttaaaatgtttcctttaacgccatgacctcggagctcttggagagtttaatcatggtcggttaacgtgcgta |
40355407 |
T |
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| Q |
201 |
gggtcaaatcatggagtagacatgaaaggtgtaagcatttatggactattt |
251 |
Q |
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| T |
40355408 |
gggtcaaatcatggagtagacatgaaaggtgtaagcatttatggactattt |
40355458 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 37887487 - 37887568
Alignment:
| Q |
113 |
aaaatagtctctgacgttaaaatatttccttt-aacgccatgacctcagagctcttggagagttgaatcatggtcggttaacg |
194 |
Q |
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| T |
37887487 |
aaaatagtctctaatgttaaaatgattccttttaacgccatgaccttatagctcttggag-gttgaattgtggtcggttaacg |
37887568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 22319114 - 22319169
Alignment:
| Q |
123 |
ctgacgttaaaatatttcctttaacgccatgacctcagagctcttggagagttgaa |
178 |
Q |
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| T |
22319114 |
ctgacgttaaaatgcttcctttaacgccatgaccttggagcttttggagggttgaa |
22319169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 3859907 - 3859947
Alignment:
| Q |
113 |
aaaatagtctctgacgttaaaatatttcctttaacgccatg |
153 |
Q |
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| T |
3859907 |
aaaatagtatttgacgttaaaatgtttcctttaacgccatg |
3859947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 45058952 - 45058904
Alignment:
| Q |
130 |
taaaatatttcctttaacgccatgacctcagagctcttggagagttgaa |
178 |
Q |
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|||||| ||| ||||||| ||||||||| ||||||||||||| |||||| |
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| T |
45058952 |
taaaatgttttctttaaccccatgaccttagagctcttggagggttgaa |
45058904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 50457176 - 50457220
Alignment:
| Q |
113 |
aaaatagtctctgacgttaaaatatttcctttaacgccatgacct |
157 |
Q |
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|||||||| | ||| |||||||| ||||||||||||||||||||| |
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|
| T |
50457176 |
aaaatagtatttgatgttaaaatgtttcctttaacgccatgacct |
50457220 |
T |
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