View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15312_low_1 (Length: 792)

Name: NF15312_low_1
Description: NF15312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15312_low_1
NF15312_low_1
[»] chr4 (8 HSPs)
chr4 (15-233)||(13615249-13615468)
chr4 (529-774)||(13614905-13615148)
chr4 (365-415)||(14586672-14586722)
chr4 (365-415)||(6199548-6199598)
chr4 (420-462)||(13615215-13615257)
chr4 (365-415)||(34502578-34502628)
chr4 (420-454)||(47789510-47789544)
chr4 (173-210)||(39276338-39276375)
[»] chr7 (2 HSPs)
chr7 (529-774)||(9622097-9622340)
chr7 (421-463)||(29234695-29234737)
[»] chr1 (9 HSPs)
chr1 (233-416)||(13771310-13771492)
chr1 (668-743)||(7583677-7583753)
chr1 (684-743)||(7097665-7097724)
chr1 (420-463)||(10518265-10518308)
chr1 (172-225)||(7583417-7583470)
chr1 (420-463)||(20791963-20792006)
chr1 (420-454)||(22593647-22593681)
chr1 (741-774)||(7097597-7097630)
chr1 (426-463)||(7097735-7097772)
[»] scaffold0005 (1 HSPs)
scaffold0005 (365-415)||(230652-230702)
[»] chr5 (2 HSPs)
chr5 (365-415)||(1850918-1850968)
chr5 (420-464)||(6462392-6462436)
[»] chr3 (1 HSPs)
chr3 (420-463)||(38684763-38684806)
[»] chr2 (1 HSPs)
chr2 (426-464)||(27679114-27679152)
[»] chr8 (2 HSPs)
chr8 (150-211)||(27316720-27316781)
chr8 (425-454)||(28444783-28444812)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-108; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 13615468 - 13615249
Alignment:
Q  15 agatagagcatattccaaaactaaacattcgatagaatgaaaaaagcagagatgtttgaagaggattggatcaagttgttccctttt-cttcttccatca 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  13615468 agatagcgcatattccaaaactaaacattcgatagaatgaaaaaagcagagatgtttgaaaaggattggatcaagttgttccctttttcttcttccatca 13615369  T
Q  114 ccattgccgctcctttcggttgttgctcatattttgtatgattagaaaaagtcttttagtaactgtcattttctcacgagtttataccttatttttatga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13615368 ccattgccgctcctttcggttgttgctcatattttgtatgattagaaaaagtcgtttagtaactgtcattttctcacgagtttataccttatttttatga 13615269  T
Q  214 tattattgtgtttttcgata 233  Q
    ||||||||||||||||||||    
T  13615268 tattattgtgtttttcgata 13615249  T

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Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 529 - 774
Target Start/End: Complemental strand, 13615148 - 13614905
Alignment:
Q  529 gatacctatgtttatctcatagttattcaaannnnnnnatctcatatttataaaataaatataatttcttgtccaaacaatttcttgaagcctattttct 628  Q
    ||||||||| ||||||||||||||||||||        |||||||||||||||||||||| || ||||||||||||  | ||||||||||||||||||||    
T  13615148 gatacctatttttatctcatagttattcaa--ttttttatctcatatttataaaataaatctagtttcttgtccaacaagtttcttgaagcctattttct 13615051  T
Q  629 cataatcttttctagagttcaagtcctcaattaactggttttcattcaaaatttgttacatgttctcgttatggagtgatttttcaggctttagctgagt 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  13615050 cataatcttttctagagttcaagtcctcaattaactggttttcattcaaaatttgttacatcttctcgttatggagtgatttttcaggcttaagctgagt 13614951  T
Q  729 tctttggaaccctttactgtttattcgaaatatgcagagtttttac 774  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  13614950 tctttggaaccctttactgtttattcgaaatatgcagagtttttac 13614905  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 14586672 - 14586722
Alignment:
Q  365 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacatt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14586672 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaaggcatt 14586722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 365 - 415
Target Start/End: Complemental strand, 6199598 - 6199548
Alignment:
Q  365 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacatt 415  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  6199598 gtagtactattcttgtttttcgttgttaaagtattcgtggtaaaaggcatt 6199548  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 420 - 462
Target Start/End: Complemental strand, 13615257 - 13615215
Alignment:
Q  420 ttttcgataagctaatttaagtagcttatagcttaaagcttat 462  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13615257 ttttcgataagctaatttaagtagcttatagcttaaagcttat 13615215  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 365 - 415
Target Start/End: Complemental strand, 34502628 - 34502578
Alignment:
Q  365 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacatt 415  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  34502628 gtagtactattcttgtttttcgttgtaaaagtattcgtggtaaaaggcatt 34502578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 420 - 454
Target Start/End: Complemental strand, 47789544 - 47789510
Alignment:
Q  420 ttttcgataagctaatttaagtagcttatagctta 454  Q
    ||||||||||||||||| |||||||||||||||||    
T  47789544 ttttcgataagctaattcaagtagcttatagctta 47789510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 39276338 - 39276375
Alignment:
Q  173 taactgtcattttctcacgagtttataccttattttta 210  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  39276338 taactgtcattttctcacgagcttataacttattttta 39276375  T

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Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 529 - 774
Target Start/End: Original strand, 9622097 - 9622340
Alignment:
Q  529 gatacctatgtttatctcatagttattcaaannnnnnnatctcatatttataaaataaatataatttcttgtccaaacaatttcttgaagcctattttct 628  Q
    ||||||||| ||||||||||||||||||||        |||||||||||||||||||||| || ||||||||||||  | ||||||||||||||||||||    
T  9622097 gatacctatttttatctcatagttattcaa--ttttttatctcatatttataaaataaatctagtttcttgtccaacaagtttcttgaagcctattttct 9622194  T
Q  629 cataatcttttctagagttcaagtcctcaattaactggttttcattcaaaatttgttacatgttctcgttatggagtgatttttcaggctttagctgagt 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  9622195 cataatcttttctagagttcaagtcctcaattaactggttttcattcaaaatttgttacatcttctcgttatggagtgatttttcaggcttaagctgagt 9622294  T
Q  729 tctttggaaccctttactgtttattcgaaatatgcagagtttttac 774  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9622295 tctttggaaccctttactgtttattcgaaatatgcagagtttttac 9622340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 421 - 463
Target Start/End: Original strand, 29234695 - 29234737
Alignment:
Q  421 tttcgataagctaatttaagtagcttatagcttaaagcttata 463  Q
    |||||||||||||||| || |||||||||||||||| ||||||    
T  29234695 tttcgataagctaattcaattagcttatagcttaaatcttata 29234737  T

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Target: chr1 (Bit Score: 118; Significance: 9e-60; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 233 - 416
Target Start/End: Complemental strand, 13771492 - 13771310
Alignment:
Q  233 agagtggtgctatttaccacgaaacaggatttcacgggattcacgaaccttcacaatttaactataataaacatccttttgatattnnnnnnnnnnncat 332  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||    
T  13771492 agagtggtgctatttaccacgaaacaagatttcacgggattcacgaaccttcacaatttaactataataaacatccttttgatatt-aaaaaaaaaacat 13771394  T
Q  333 aaaagacattttttgcggaagaaacggcgagagtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacattt 416  Q
    ||||||||||||| || ||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  13771393 aaaagacatttttggcagaaaaaacagcgagagtagtactatttttgtttttcgttgtgaaagtattcgtggtaaaaggcattt 13771310  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 668 - 743
Target Start/End: Original strand, 7583677 - 7583753
Alignment:
Q  668 tttcattcaaaatttgttacatgttctcgttatggagtgattttt-caggctttagctgagttctttggaacccttt 743  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||||||||    
T  7583677 tttcattcaatatttgttacatattctcattatggagtgatttttccaggttttagctgagttctttggaacccttt 7583753  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 684 - 743
Target Start/End: Complemental strand, 7097724 - 7097665
Alignment:
Q  684 ttacatgttctcgttatggagtgatttttcaggctttagctgagttctttggaacccttt 743  Q
    |||||||||||| ||||| | ||||||||||||||||||||||| |||||||||||||||    
T  7097724 ttacatgttctcattatgtactgatttttcaggctttagctgagctctttggaacccttt 7097665  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 420 - 463
Target Start/End: Original strand, 10518265 - 10518308
Alignment:
Q  420 ttttcgataagctaatttaagtagcttatagcttaaagcttata 463  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  10518265 tttttgataagctaatttaagtagcttatagcttaaagcttata 10518308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 7583417 - 7583470
Alignment:
Q  172 gtaactgtcattttctcacgagtttataccttatttttatgatattattgtgtt 225  Q
    |||||||||||||||||||||| |||||  ||||||||||||  ||||||||||    
T  7583417 gtaactgtcattttctcacgagcttatagtttatttttatgagcttattgtgtt 7583470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 463
Target Start/End: Complemental strand, 20792006 - 20791963
Alignment:
Q  420 ttttcgataagctaatttaagtagcttatagcttaaagcttata 463  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||    
T  20792006 tttttgataagctaattcaagtagcttatagcttaaatcttata 20791963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 420 - 454
Target Start/End: Complemental strand, 22593681 - 22593647
Alignment:
Q  420 ttttcgataagctaatttaagtagcttatagctta 454  Q
    ||||||||||||||||| |||||||||||||||||    
T  22593681 ttttcgataagctaattcaagtagcttatagctta 22593647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 741 - 774
Target Start/End: Complemental strand, 7097630 - 7097597
Alignment:
Q  741 tttactgtttattcgaaatatgcagagtttttac 774  Q
    ||||||| ||||||||||||||||||||||||||    
T  7097630 tttactggttattcgaaatatgcagagtttttac 7097597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 463
Target Start/End: Complemental strand, 7097772 - 7097735
Alignment:
Q  426 ataagctaatttaagtagcttatagcttaaagcttata 463  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  7097772 ataagctaattcaagtatcttatagcttaaagcttata 7097735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 365 - 415
Target Start/End: Complemental strand, 230702 - 230652
Alignment:
Q  365 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacatt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  230702 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaaggcatt 230652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 365 - 415
Target Start/End: Complemental strand, 1850968 - 1850918
Alignment:
Q  365 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacatt 415  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  1850968 gtagtactattcttgtttttcgttgtaaaagtattcgtggtaaaaggcatt 1850918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 464
Target Start/End: Complemental strand, 6462436 - 6462392
Alignment:
Q  420 ttttcgataagctaatttaagtagcttatagcttaaagcttatag 464  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||    
T  6462436 tttttgataagctaattcaagtagcttatatcttaaagcttatag 6462392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 420 - 463
Target Start/End: Complemental strand, 38684806 - 38684763
Alignment:
Q  420 ttttcgataagctaatttaagtagcttatagcttaaagcttata 463  Q
    |||| |||||||||||| ||||||||||||||||||||||||||    
T  38684806 tttttgataagctaattcaagtagcttatagcttaaagcttata 38684763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 426 - 464
Target Start/End: Original strand, 27679114 - 27679152
Alignment:
Q  426 ataagctaatttaagtagcttatagcttaaagcttatag 464  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  27679114 ataagctaattcaagtagcttatggcttaaagcttatag 27679152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 27316781 - 27316720
Alignment:
Q  150 tatgattagaaaaagtcttttagtaactgtcattttctcacgagtttataccttatttttat 211  Q
    ||||||||||||| ||| ||| ||||   ||||| ||||||||||||||| |||||||||||    
T  27316781 tatgattagaaaaggtcgtttggtaataatcattctctcacgagtttatatcttatttttat 27316720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 28444812 - 28444783
Alignment:
Q  425 gataagctaatttaagtagcttatagctta 454  Q
    ||||||||||||||||||||||||||||||    
T  28444812 gataagctaatttaagtagcttatagctta 28444783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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