View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15312_low_10 (Length: 262)
Name: NF15312_low_10
Description: NF15312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15312_low_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 262
Target Start/End: Complemental strand, 41067036 - 41066777
Alignment:
| Q |
4 |
agaatacttatgtgtaattggttttaccgtaccttcacaatattagtattatttcacaacaaagaatatacctttatttatatatacaacccaactaact |
103 |
Q |
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| T |
41067036 |
agaatacttatgtgtaattggttttaccgtacctttacaatattagtattatttcacaacaaagaatatacctttatttatatatataacccaactaact |
41066937 |
T |
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| Q |
104 |
acatcggtggacattgatgagtgatgacttataaggagagacaccgaagcctaactaaagaagaagaaaaatgcagctcaatttcaacccttaacaccta |
203 |
Q |
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| T |
41066936 |
acatcggtggacattgatgagtgatgacttataaggagagacaccgaagcctaactaaagaagaagaaaaatgcagctcaatttcaactcttaacaccta |
41066837 |
T |
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| Q |
204 |
gcatcac-tactccctcattaattgtcccaactttctgttttacaacatcctttctttct |
262 |
Q |
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| T |
41066836 |
gcatcacttactccctcattaattgtcccaactttctgttttacaacatcctttctttct |
41066777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 33 - 242
Target Start/End: Complemental strand, 43220350 - 43220147
Alignment:
| Q |
33 |
taccttcacaatattagtattatttcacaacaaagaatatacctttatttatatatacaacccaactaactacatcggtggacattgatgagtgatgact |
132 |
Q |
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| T |
43220350 |
taccttcacaatattagtatc---tcacaacaa-gaatatacctttatt---atatacatcc-aactaactacatcagtggacattgatgagtgatgact |
43220259 |
T |
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| Q |
133 |
tataaggagagacaccgaagcctaactaaaga-agaagaa-aaatgcagctcaatttcaacccttaacacctagcatcacta-ctccctcattaattgtc |
229 |
Q |
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| T |
43220258 |
tataaggagagacaccgaagcctaaccaaacagggaagaacaaatgcagctcagtttcaacac-taacacctagcatctctacctctctcattaattgtt |
43220160 |
T |
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| Q |
230 |
ccaactttctgtt |
242 |
Q |
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| T |
43220159 |
tcaactttctgtt |
43220147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 33 - 242
Target Start/End: Original strand, 695966 - 696169
Alignment:
| Q |
33 |
taccttcacaatattagtattatttcacaacaaagaatatacctttatttatatatacaacccaactaactacatcggtggacattgatgagtgatgact |
132 |
Q |
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| T |
695966 |
taccttcacaatattagtatc---tcacaacaa-gaatatacctttatt---atatacatcc-aactaactacatcagtggacattgatgagtgatgact |
696057 |
T |
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| Q |
133 |
tataaggagagacaccgaagcctaactaaaga-agaagaa-aaatgcagctcaatttcaacccttaacacctagcatcacta-ctccctcattaattgtc |
229 |
Q |
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| T |
696058 |
tataaggagagacaccgaagcctaaccaaacagggaagaacaaatgcagctcagtttcaacac-taacacctagcatctctacctctctcattaattgtt |
696156 |
T |
|
| Q |
230 |
ccaactttctgtt |
242 |
Q |
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|||||||||||| |
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| T |
696157 |
tcaactttctgtt |
696169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 33 - 242
Target Start/End: Complemental strand, 39723946 - 39723743
Alignment:
| Q |
33 |
taccttcacaatattagtattatttcacaacaaagaatatacctttatttatatatacaacccaactaactacatcggtggacattgatgagtgatgact |
132 |
Q |
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| T |
39723946 |
taccttcacaatattagtatc---tcacaacaa-gaatatacctttatt---atatacatcc-aactaactacatcagtggacattgatgagtgatgact |
39723855 |
T |
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| Q |
133 |
tataaggagagacaccgaagcctaactaaaga-agaagaa-aaatgcagctcaatttcaacccttaacacctagcatcacta-ctccctcattaattgtc |
229 |
Q |
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|||||||||||||||||||||||||| ||| | |||||| |||||||||||| ||||||| | |||||||||||||| ||| ||| |||||||||||| |
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| T |
39723854 |
tataaggagagacaccgaagcctaaccaaacagggaagaacaaatgcagctcagtttcaacac-taacacctagcatctctacctctctcattaattgtt |
39723756 |
T |
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| Q |
230 |
ccaactttctgtt |
242 |
Q |
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| T |
39723755 |
tcaactttctgtt |
39723743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 5391282 - 5391409
Alignment:
| Q |
21 |
ttggttttaccgtaccttcacaatattagtattatttcacaacaaagaatatacctttatttatatatacaacccaactaactacatcggtggacattga |
120 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||||||| ||||| ||| |
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| T |
5391282 |
ttggttttacagtaccttcacaatattagtatc---tcacaacaaagaatataccttttattatatacag---ccaactaactacatcggcggacaatga |
5391375 |
T |
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| Q |
121 |
tgagtgatgacttataaggagagacaccgaagcc |
154 |
Q |
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| T |
5391376 |
tgagtgataacttataaggagagacaccgaagcc |
5391409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 5391662 - 5391731
Alignment:
| Q |
170 |
aaaaatgcagctcaatttcaacccttaacacctagcatcactac-tccctcattaattgtcccaactttct |
239 |
Q |
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|||||||||||||| ||||||| | |||||||||||||| |||| || |||| |||||||| ||||||||| |
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| T |
5391662 |
aaaaatgcagctcagtttcaacac-taacacctagcatctctacttctctcactaattgtctcaactttct |
5391731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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