View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15312_low_12 (Length: 249)

Name: NF15312_low_12
Description: NF15312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15312_low_12
NF15312_low_12
[»] chr4 (25 HSPs)
chr4 (1-131)||(7908828-7908958)
chr4 (1-134)||(7878909-7879048)
chr4 (4-138)||(7779327-7779461)
chr4 (4-134)||(7773182-7773318)
chr4 (2-128)||(7801170-7801295)
chr4 (3-100)||(7766206-7766303)
chr4 (3-128)||(7787028-7787152)
chr4 (20-128)||(7823520-7823627)
chr4 (50-129)||(7905153-7905232)
chr4 (41-110)||(7814049-7814118)
chr4 (66-145)||(48871157-48871235)
chr4 (66-145)||(48876461-48876539)
chr4 (66-145)||(48886843-48886921)
chr4 (39-128)||(7237153-7237240)
chr4 (139-185)||(7879465-7879511)
chr4 (58-130)||(37826394-37826465)
chr4 (56-130)||(45384291-45384364)
chr4 (66-130)||(45365621-45365684)
chr4 (66-110)||(48863856-48863900)
chr4 (148-183)||(50670089-50670124)
chr4 (60-130)||(49040559-49040628)
chr4 (1-110)||(7771921-7772030)
chr4 (1-110)||(7790606-7790715)
chr4 (201-233)||(7778868-7778900)
chr4 (66-110)||(48903549-48903593)
[»] chr8 (3 HSPs)
chr8 (66-130)||(4030189-4030252)
chr8 (66-107)||(12200930-12200971)
chr8 (66-107)||(12445358-12445399)
[»] chr5 (1 HSPs)
chr5 (66-130)||(9120360-9120423)
[»] chr3 (1 HSPs)
chr3 (66-109)||(11014915-11014958)
[»] chr2 (1 HSPs)
chr2 (44-143)||(29350997-29351095)
[»] chr1 (2 HSPs)
chr1 (58-130)||(24341000-24341071)
chr1 (58-130)||(24353365-24353436)
[»] chr7 (1 HSPs)
chr7 (57-109)||(30166082-30166134)


Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 7908828 - 7908958
Alignment:
Q  1 ataaaggacagttattaaggcatcgatccttctctaatagtccatccgaagttgtcgtgtatatggagtctctgctttcactccctggtgacagtgagca 100  Q
    ||||||||||| |||||||||||||  |||||| |||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||| ||||||    
T  7908828 ataaaggacagctattaaggcatcgcaccttctttaatagtccatccgaagttgtcatgtataccgagtctctgctttcactccctggtgacaatgagca 7908927  T
Q  101 agtttaagaaagattacacaaacaagaagac 131  Q
    |||||||||||||| |||||| |||||||||    
T  7908928 agtttaagaaagatcacacaatcaagaagac 7908958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 7878909 - 7879048
Alignment:
Q  1 ataaaggacagttattaaggcatcgatccttctctaatagtccatccgaagttgtcgtgtatatggagtctctgctttcac------tccctggtgacag 94  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||| ||||||||| |||||||      ||||||||||||     
T  7878909 ataaaggacagttattaaggcatcgctccttctgtaatagtccatccgaagttgtcatgtatacggagtctctactttcactccctgtccctggtgacaa 7879008  T
Q  95 tgagcaagtttaagaaagattacacaaacaagaagaccga 134  Q
     ||||||||||||||||||| |||||||||||||||||||    
T  7879009 cgagcaagtttaagaaagatcacacaaacaagaagaccga 7879048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 7779461 - 7779327
Alignment:
Q  4 aaggacagttattaaggcatcgatccttctctaatagtccatccgaagttgtcgtgtatatggagtctctgctttcactccctggtgacagtgagcaagt 103  Q
    |||||||| ||||||||||||| ||||||| ||||||||||| |||||||||| |||||| ||||||||||||||| |||||| |||||| |  ||||||    
T  7779461 aaggacagctattaaggcatcgctccttctgtaatagtccattcgaagttgtcatgtatacggagtctctgctttcgctccctagtgacaatccgcaagt 7779362  T
Q  104 ttaagaaagattacacaaacaagaagaccgaggtt 138  Q
    |||| ||||||| ||||||||||||||||||||||    
T  7779361 ttaataaagattgcacaaacaagaagaccgaggtt 7779327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 7773318 - 7773182
Alignment:
Q  4 aaggacagttattaaggcatcgatccttctctaatagtccatccgaagttgtcgtgtatatggagtctctgctttcactcc------ctggtgacagtga 97  Q
    |||||||||||||||||||||   |||||| |||||||||||||||||||||| ||||||  |||||||||||||||||||      |||||||||   |    
T  7773318 aaggacagttattaaggcatcacgccttctgtaatagtccatccgaagttgtcatgtatactgagtctctgctttcactccctggccctggtgacaacaa 7773219  T
Q  98 gcaagtttaagaaagattacacaaacaagaagaccga 134  Q
    |||| |||||||||||| |||||||||||||||||||    
T  7773218 gcaaatttaagaaagatcacacaaacaagaagaccga 7773182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 7801170 - 7801295
Alignment:
Q  2 taaaggacagttattaaggcatcgatccttctctaatagtccatccgaagttgtcgtgtatatggagtctctgctttcactccctggtgacagtgagcaa 101  Q
    |||||| ||| | |||| ||||| ||| |||| ||| ||||||||| |||||||| ||||||  ||||||||||||||||||||||| |||| |||| ||    
T  7801170 taaagggcagctgttaaagcatcaatcattctgtaacagtccatccaaagttgtcatgtataccgagtctctgctttcactccctggggacaatgagtaa 7801269  T
Q  102 gtttaagaaagattacacaaacaagaa 128  Q
    ||||||| ||||| ||| |||||||||    
T  7801270 gtttaag-aagatgacaaaaacaagaa 7801295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 7766206 - 7766303
Alignment:
Q  3 aaaggacagttattaaggcatcgatccttctctaatagtccatccgaagttgtcgtgtatatggagtctctgctttcactccctggtgacagtgagca 100  Q
    ||||||||||| ||| ||||||  |||||||  || |||||||||||||||||||||||||  |||||||| ||||||||| ||||||||| ||||||    
T  7766206 aaaggacagtttttagggcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactctctggtgacaatgagca 7766303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 7787028 - 7787152
Alignment:
Q  3 aaaggacagttattaaggcatcgatccttctctaatagtccatccgaagttgtcgtgtatatggagtctctgctttcactccctggtgacagtgagcaag 102  Q
    ||||||||||| ||| ||||||  |||||||  || |||||||||||||||||||||||||  |||||||| ||||||||| | ||||||  |||||| |    
T  7787028 aaaggacagtttttagggcatcactccttctgcaacagtccatccgaagttgtcgtgtatacagagtctctactttcactctccggtgacgatgagcatg 7787127  T
Q  103 tttaagaaagattacacaaacaagaa 128  Q
    |||||| ||||| ||||| |||||||    
T  7787128 tttaag-aagatgacacagacaagaa 7787152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 7823520 - 7823627
Alignment:
Q  20 gcatcgatccttctctaatagtccatccgaagttgtcgtgtatatggagtctctgctttcactccctggtgacagtgagcaagtttaagaaagattacac 119  Q
    ||||| ||| |||| ||| ||||||||| |||||||| ||||||  ||||||||||||||||||||||| |||| |||| ||||||||| ||||| |||     
T  7823520 gcatcaatcattctgtaacagtccatccaaagttgtcatgtataccgagtctctgctttcactccctggggacaatgagtaagtttaag-aagatgacaa 7823618  T
Q  120 aaacaagaa 128  Q
    |||||||||    
T  7823619 aaacaagaa 7823627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 7905153 - 7905232
Alignment:
Q  50 agttgtcgtgtatatggagtctctgctttcactccctggtgacagtgagcaagtttaagaaagattacacaaacaagaag 129  Q
    ||||||| |||||| ||||||||||||||||||||| ||||| |  |||||||||||||||||||  |||||||||||||    
T  7905153 agttgtcatgtatacggagtctctgctttcactccccggtgataacgagcaagtttaagaaagatcgcacaaacaagaag 7905232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 7814049 - 7814118
Alignment:
Q  41 tccatccgaagttgtcgtgtatatggagtctctgctttcactccctggtgacagtgagcaagtttaagaa 110  Q
    ||||||| |||||||| ||||||  ||||||||||||||||||||||| |||| |||| |||||||||||    
T  7814049 tccatccaaagttgtcatgtataccgagtctctgctttcactccctggggacaatgagtaagtttaagaa 7814118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 48871157 - 48871235
Alignment:
Q  66 gagtctctgctttcactccctggtgacagtgagcaagtttaagaaagattacacaaacaagaagaccgaggttatgaatt 145  Q
    |||||| ||||||||||||||||||||| |||||| ||||||| ||| | |||||||||||||||  |||||| ||||||    
T  48871157 gagtctttgctttcactccctggtgacaatgagcaggtttaag-aaggtgacacaaacaagaagaatgaggttttgaatt 48871235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 48876461 - 48876539
Alignment:
Q  66 gagtctctgctttcactccctggtgacagtgagcaagtttaagaaagattacacaaacaagaagaccgaggttatgaatt 145  Q
    |||||| ||||||||||||||||||||| |||||| ||||||| ||| | |||||||||||||||  |||||| ||||||    
T  48876461 gagtctttgctttcactccctggtgacaatgagcaggtttaag-aaggtgacacaaacaagaagaatgaggttttgaatt 48876539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 48886843 - 48886921
Alignment:
Q  66 gagtctctgctttcactccctggtgacagtgagcaagtttaagaaagattacacaaacaagaagaccgaggttatgaatt 145  Q
    |||||| ||||||||||||||||||||| |||||| ||||||| ||| | |||||||||||||||  |||||| ||||||    
T  48886843 gagtctttgctttcactccctggtgacaatgagcaggtttaag-aaggtgacacaaacaagaagaatgaggttttgaatt 48886921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 7237240 - 7237153
Alignment:
Q  39 agtccatccgaagttgtcgtgtatatggagtctctgctttcactccctggtgacagtgagcaagtttaagaaagattacacaaacaagaa 128  Q
    |||| ||| ||||||||| ||||||  ||||||||||||||||||| |||||||| |||||| | |||  |||||| |||||||||||||    
T  7237240 agtcaatctgaagttgtcatgtatacagagtctctgctttcactccttggtgacaatgagcatgctta--aaagatgacacaaacaagaa 7237153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 7879465 - 7879511
Alignment:
Q  139 atgaattcatgaatttataagactttagatcagaagaaacatcaata 185  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||    
T  7879465 atgaattcatgaatttataagacgttagatcagaagacacatcaata 7879511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 37826465 - 37826394
Alignment:
Q  58 tgtatatggagtctctgctttcactccctggtgacagtgagcaagtttaagaaagattacacaaacaagaaga 130  Q
    |||||| |||||||||||||||| |||||| |||| | ||||||||||||| ||||| | |||||||||||||    
T  37826465 tgtatacggagtctctgctttcattccctgttgacggagagcaagtttaag-aagatgatacaaacaagaaga 37826394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 45384364 - 45384291
Alignment:
Q  56 cgtgtatatggagtctctgctttcactccctggtgacagtgagcaagtttaagaaagattacacaaacaagaaga 130  Q
    ||||||||  |||||||| ||||||||  ||||||||| |||||||| ||||||| ||| |||||||||||||||    
T  45384364 cgtgtatacagagtctctcctttcactttctggtgacaatgagcaagcttaagaa-gatgacacaaacaagaaga 45384291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 45365684 - 45365621
Alignment:
Q  66 gagtctctgctttcactccctggtgacagtgagcaagtttaagaaagattacacaaacaagaaga 130  Q
    |||||| |||| ||||| |||||||||| |||||||| ||||||| ||| |||||||||||||||    
T  45365684 gagtctttgctgtcacttcctggtgacaatgagcaagcttaagaa-gatgacacaaacaagaaga 45365621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 48863856 - 48863900
Alignment:
Q  66 gagtctctgctttcactccctggtgacagtgagcaagtttaagaa 110  Q
    |||||||||||||||||||||  |||||||||||||| |||||||    
T  48863856 gagtctctgctttcactccctaatgacagtgagcaagcttaagaa 48863900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 50670089 - 50670124
Alignment:
Q  148 tgaatttataagactttagatcagaagaaacatcaa 183  Q
    |||||||||||||||||||||||| |||||||||||    
T  50670089 tgaatttataagactttagatcagtagaaacatcaa 50670124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 49040628 - 49040559
Alignment:
Q  60 tatatggagtctctgctttcactccctggtgacagtgagcaagtttaagaaagattacacaaacaagaaga 130  Q
    |||| |||||||||||||||||||||   ||||||| |||||| ||||| |||||  ||||||||||||||    
T  49040628 tatacggagtctctgctttcactccccaatgacagttagcaagcttaag-aagatggcacaaacaagaaga 49040559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 7771921 - 7772030
Alignment:
Q  1 ataaaggacagttattaaggcatcgatccttctctaatagtccatccgaagttgtcgtgtatatggagtctctgctttcactccctggtgacagtgagca 100  Q
    ||||||||||  ||||| | || || ||||||| ||| |||| ||| ||| ||||| ||||||  || |||||||||||||| | |||||||| ||||||    
T  7771921 ataaaggacaactattaggacagcgctccttctgtaacagtcaatctgaaattgtcatgtatacagaatctctgctttcactacttggtgacaatgagca 7772020  T
Q  101 agtttaagaa 110  Q
     | |||||||    
T  7772021 tgattaagaa 7772030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 7790606 - 7790715
Alignment:
Q  1 ataaaggacagttattaaggcatcgatccttctctaatagtccatccgaagttgtcgtgtatatggagtctctgctttcactccctggtgacagtgagca 100  Q
    ||||||||||  ||||| | || || ||||||| ||| |||| ||| |||||| || ||||||  || |||||||||||||| | |||||||| ||||||    
T  7790606 ataaaggacaactattaggacagcgctccttctgtaacagtcaatctgaagttttcatgtatacagaatctctgctttcactacttggtgacaatgagca 7790705  T
Q  101 agtttaagaa 110  Q
     | |||||||    
T  7790706 tgattaagaa 7790715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 7778900 - 7778868
Alignment:
Q  201 ctctctttggtttccatgtataagtcaagcttg 233  Q
    ||||||||||| |||||||||||||||||||||    
T  7778900 ctctctttggtctccatgtataagtcaagcttg 7778868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 48903549 - 48903593
Alignment:
Q  66 gagtctctgctttcactccctggtgacagtgagcaagtttaagaa 110  Q
    ||||||||  |||||||||||||||||| | ||||||||||||||    
T  48903549 gagtctctattttcactccctggtgacattaagcaagtttaagaa 48903593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 4030252 - 4030189
Alignment:
Q  66 gagtctctgctttcactccctggtgacagtgagcaagtttaagaaagattacacaaacaagaaga 130  Q
    |||||||||||||||||||||||| ||| |||||||| ||||| ||||| || ||||||||||||    
T  4030252 gagtctctgctttcactccctggtaacaatgagcaagcttaag-aagatgactcaaacaagaaga 4030189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 12200930 - 12200971
Alignment:
Q  66 gagtctctgctttcactccctggtgacagtgagcaagtttaa 107  Q
    ||||||||||||||||||||||||||  ||||||| ||||||    
T  12200930 gagtctctgctttcactccctggtgatcgtgagcaggtttaa 12200971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 12445358 - 12445399
Alignment:
Q  66 gagtctctgctttcactccctggtgacagtgagcaagtttaa 107  Q
    ||||||||||||||||||||||||||  ||||||| ||||||    
T  12445358 gagtctctgctttcactccctggtgatcgtgagcaggtttaa 12445399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 9120360 - 9120423
Alignment:
Q  66 gagtctctgctttcactccctggtgacagtgagcaagtttaagaaagattacacaaacaagaaga 130  Q
    |||||||||||||||||||||||||||| ||| |||| |||||  |||| |||||||||||||||    
T  9120360 gagtctctgctttcactccctggtgacaatgaacaagcttaag-gagatgacacaaacaagaaga 9120423  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 11014958 - 11014915
Alignment:
Q  66 gagtctctgctttcactccctggtgacagtgagcaagtttaaga 109  Q
    ||||||||||||||||||||||||||||||| |||| |||||||    
T  11014958 gagtctctgctttcactccctggtgacagtgggcaattttaaga 11014915  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 29350997 - 29351095
Alignment:
Q  44 atccgaagttgtcgtgtatatggagtctctgctttcactccctggtgacagtgagcaagtttaagaaagattacacaaacaagaagaccgaggttatgaa 143  Q
    ||||||||| ||| |||| |  |||||| ||||||||||||| ||||||| |||||||| ||||| ||||| || ||||||||||||  |||||| ||||    
T  29350997 atccgaagtggtcatgtacagagagtctatgctttcactccccggtgacaatgagcaagcttaag-aagatgactcaaacaagaagaatgaggttgtgaa 29351095  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 24341000 - 24341071
Alignment:
Q  58 tgtatatggagtctctgctttcactccctggtgacagtgagcaagtttaagaaagattacacaaacaagaaga 130  Q
    |||||| ||||||| |||||||||||||| |||||| |||| ||| ||||| |||||  ||||||||||||||    
T  24341000 tgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaag-aagatggcacaaacaagaaga 24341071  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 24353365 - 24353436
Alignment:
Q  58 tgtatatggagtctctgctttcactccctggtgacagtgagcaagtttaagaaagattacacaaacaagaaga 130  Q
    |||||| ||||||| |||||||||||||| |||||| |||| ||| ||||| |||||  ||||||||||||||    
T  24353365 tgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaag-aagatggcacaaacaagaaga 24353436  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 30166082 - 30166134
Alignment:
Q  57 gtgtatatggagtctctgctttcactccctggtgacagtgagcaagtttaaga 109  Q
    |||||||| |||||||||||||||||||| | || || |||||||| ||||||    
T  30166082 gtgtatatagagtctctgctttcactccccgatggcactgagcaagcttaaga 30166134  T

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