View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15312_low_2 (Length: 579)
Name: NF15312_low_2
Description: NF15312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15312_low_2 |
 | |
|
| [»] chr3 (19 HSPs) |
| |
|
| [»] scaffold1215 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 556; Significance: 0; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 12 - 579
Target Start/End: Original strand, 27632422 - 27632989
Alignment:
| Q |
12 |
gagatgaagagtatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcat |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27632422 |
gagacgaagagtatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcat |
27632521 |
T |
|
| Q |
112 |
ctgagagcatatcattcaagcttggaagatacacattgtccctagacgctggcgaaattgaatcaggcactggttcatgtttgttgggttcccaggaagc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27632522 |
ctgagagcatatcattcaagcttggaagatacacattgtccctagacgctggcaaaattgaatcaggcactggttcatgtttgttgggttcccaggaagc |
27632621 |
T |
|
| Q |
212 |
atctttcttgtcatgcaattcccaatgaacatgtgagactccgtttctccgagggttccaaatcccctatgtagaaagcatacatcgttatatcagcata |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27632622 |
atctttcttgtcatgcaattcccaatgaacatgtgagactccgtttctccgagggttccaaatcccctatgtagaaagcatacatcgttatatcagcata |
27632721 |
T |
|
| Q |
312 |
atgaattgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27632722 |
atgaattgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttg |
27632821 |
T |
|
| Q |
412 |
tgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27632822 |
tgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcagcacaaatctgatataggaacagtgaagcagtc |
27632921 |
T |
|
| Q |
512 |
actcagataccaattttcaattataactaagtacaatacctatgttaaatgcttagaaatgtcttgtt |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27632922 |
actcagataccaattttcaattataactaagtacaatacctatgttaaatgcttagaaatgtcttgtt |
27632989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 23 - 547
Target Start/End: Original strand, 34517225 - 34517749
Alignment:
| Q |
23 |
tatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcatctgagagcata |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34517225 |
tatagactgcaaaggatcatacctttttgcaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcatctgagagcata |
34517324 |
T |
|
| Q |
123 |
tcattcaagcttggaagatacacattgtccctagacgctggcgaaattgaatcaggcactggttcatgtttgttgggttcccaggaagcatctttcttgt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34517325 |
tcattcaagcttggaagatacacattgtccctagacgctggcaaaattgaatcaggcactggttcatgtttgttgggttcccaggaagcatctttcttgt |
34517424 |
T |
|
| Q |
223 |
catgcaattcccaatgaacatgtgagactccgtttctccgagggttccaaatcccctatgtagaaagcatacatcgttatatcagcataatgaattgggt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34517425 |
catgcaattcccaatgaacatgtgagactccgtttctccgagggttccaaatcccctatgtagaaagcatacatcgttatatcagcataatgaattgggt |
34517524 |
T |
|
| Q |
323 |
tatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttgga |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34517525 |
tatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttgga |
34517624 |
T |
|
| Q |
423 |
agattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagatacc |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34517625 |
agattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaagacaaatctgatataggaacagtgaagcagtcactcagatacc |
34517724 |
T |
|
| Q |
523 |
aattttcaattataactaagtacaa |
547 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
34517725 |
aattttcaattataactaagtacaa |
34517749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 23 - 579
Target Start/End: Original strand, 34505638 - 34506178
Alignment:
| Q |
23 |
tatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcatctgagagcata |
122 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||||||||| | | ||| |||||||||||||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
34505638 |
tatagacttcaaaggaccatacctttttgcaatggatgtgtcgttttcaacgacaacatctgaggcatttctgattgtatcttcttcatctgagagaata |
34505737 |
T |
|
| Q |
123 |
tcattcaagcttggaagatacacattgtccctagacgctggcgaaattgaatcaggcactggttcatgtttgttgggttcccaggaagcatctttcttgt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| | |
|
|
| T |
34505738 |
tcattcaagcttggaagatacacattgtccataaacgcaggcgaaattgaatcaggcattggttcgtgtttgttgtgttcccaggaagcatctttcttat |
34505837 |
T |
|
| Q |
223 |
catgcaattcccaatgaacatgtgagactccg---tttctccgagggttccaaatcccctatgtagaaagcatacatcgttatatcagcataatgaattg |
319 |
Q |
| |
|
||||||| ||||||||| |||||||| ||| ||| | ||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34505838 |
gatgcaatgcccaatgaatatgtgagatgccgtttttttttcgaggcttccaaatccactatgtagaaagcatacatcgttatatcagcataataaattg |
34505937 |
T |
|
| Q |
320 |
ggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagattt |
419 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34505938 |
ggttagataagaatcaaatacttctacgcagaaactgagctattttacaattaaagcacataa-------------------ataccttttgtgagattg |
34506018 |
T |
|
| Q |
420 |
ggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagat |
519 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||| ||| | ||| |
|
|
| T |
34506019 |
ggaagcttgagttcttcaccatcctgattgcatcctcccctaagctttcatcacacacaggacaaatctgatataggaacagtgaagcattcatttcgat |
34506118 |
T |
|
| Q |
520 |
accaattttcaattataactaagtacaatacctatgttaaatgcttagaaatgtcttgtt |
579 |
Q |
| |
|
| ||| |||||| ||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34506119 |
atcaaatttcaaatataatcaagtacaatacctatgttaaatatttagaaatgtcttgtt |
34506178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 23 - 579
Target Start/End: Original strand, 27616853 - 27617393
Alignment:
| Q |
23 |
tatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcatctgagagcata |
122 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||||||||||| | ||| |||||||||||||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
27616853 |
tatagacttcaaaggaccatacctttttgcaatggatgtgtctttttcaacgacaacatctgaggcatttctgattgtatcttcttcatctgagagaata |
27616952 |
T |
|
| Q |
123 |
tcattcaagcttggaagatacacattgtccctagacgctggcgaaattgaatcaggcactggttcatgtttgttgggttcccaggaagcatctttcttgt |
222 |
Q |
| |
|
| |||||||||||||||||||||||||||| || |||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| | |
|
|
| T |
27616953 |
taattcaagcttggaagatacacattgtccttaaacgcaggcgaaattgaatcaggcattggttcgtgtttgttgtgttcccaggaagcatctttcttat |
27617052 |
T |
|
| Q |
223 |
catgcaattcccaatgaacatgtgagactccg---tttctccgagggttccaaatcccctatgtagaaagcatacatcgttatatcagcataatgaattg |
319 |
Q |
| |
|
||||||| | ||||||| |||||||| ||| ||| | ||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27617053 |
gatgcaatgctcaatgaatatgtgagatgccgtttttttttcgaggcttccaaatccactatgtagaaagcatacatcgttatatcagcataataaattg |
27617152 |
T |
|
| Q |
320 |
ggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagattt |
419 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||| ||| ||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
27617153 |
ggttagataagaatcaaatacttctacgcagaaactgagctattttactattaaagcacataa-------------------ataccttttgtgagattg |
27617233 |
T |
|
| Q |
420 |
ggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagat |
519 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||| ||| | ||| |
|
|
| T |
27617234 |
ggaagcttgagttcttcaccatcctgattgcatcctcccctaagctttcatcacacacaggacaaatctgatataggaacagtgaagcattcatttcgat |
27617333 |
T |
|
| Q |
520 |
accaattttcaattataactaagtacaatacctatgttaaatgcttagaaatgtcttgtt |
579 |
Q |
| |
|
| ||| |||||| ||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27617334 |
atcaaatttcaaatataatcaagtacaatacctatgttaaatatttagaaatgtcttgtt |
27617393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 23 - 304
Target Start/End: Original strand, 34526410 - 34526694
Alignment:
| Q |
23 |
tatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcatctgagagcata |
122 |
Q |
| |
|
|||||| ||||||||| ||||||||||| |||||||||||| | ||||| |||| ||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
34526410 |
tatagaatgcaaaggacaatacctttttgcaatggatgtgtcgtttgcaacgacatcatctgaggcattgctgatggtatcttcttcatctgaaagtata |
34526509 |
T |
|
| Q |
123 |
tcattcaagcttggaagatacacattgtccctagacgctggcgaaattgaatcaggcactggttcatgtttgttgggttcccaggaagcatctttcttgt |
222 |
Q |
| |
|
| |||||||||| ||||||||||||| |||||| |||||||||||||||||||||||| | |||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
34526510 |
taattcaagctttgaagatacacattctccctaaacgctggcgaaattgaatcaggcatttgttcatgtttgttgtgttccctagaagcatctttcttgc |
34526609 |
T |
|
| Q |
223 |
catgcaattcccaatgaacatgtgagactccg---tttctccgagggttccaaatcccctatgtagaaagcatacatcgttatat |
304 |
Q |
| |
|
|||||| |||||||||||||| | || ||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34526610 |
catgcacttcccaatgaacattttgtacgccgttttttttccgaggtttccaaatccactatgtagaaagcatacatcgttatat |
34526694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 267 - 544
Target Start/End: Original strand, 34477940 - 34478214
Alignment:
| Q |
267 |
ttccaaatcccctatgtagaaagcatacatcgttatatcagcataatgaattgggttatataagaatcaaatacttctatgcagaaactaagcaatttta |
366 |
Q |
| |
|
|||||||| |||||||||| |||||||||| ||||| || |||||||||||| ||| |||||||||||||||| | || ||||| ||| || ||| |
|
|
| T |
34477940 |
ttccaaattccctatgtaggaagcatacatttttataccaccataatgaattgatttagataagaatcaaatactacactg---aaactgagctatgtta |
34478036 |
T |
|
| Q |
367 |
caattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcct |
466 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| | ||| | | ||| ||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
34478037 |
caattaaagcacataaatcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttgcatcctcccctaagctt |
34478136 |
T |
|
| Q |
467 |
ttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagta |
544 |
Q |
| |
|
| || ||| ||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
34478137 |
tcatcacacaaaggacaaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattataactaagta |
34478214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 267 - 532
Target Start/End: Original strand, 34462898 - 34463159
Alignment:
| Q |
267 |
ttccaaatcccctatgtagaaagcatacatcgttatatcagcataatgaattgggttatataagaatcaaatacttctatgcagaaactaagcaatttta |
366 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || |||||| |||||||||||| ||| |||||||| ||||||| |||| |||| | ||| || ||| |
|
|
| T |
34462898 |
ttccaaatgccctatgtagaaagcatacattgtaatatcaccataatgaattgatttagataagaattaaatact---atgc-gaaaatgagctatgtta |
34462993 |
T |
|
| Q |
367 |
caattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcct |
466 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||| | | | ||||| |||| |||||| | |||||||| ||||||||||| | |
|
|
| T |
34462994 |
caattaaagcacatacatcacaagataagcaacagatacctttggcacggctgggaagcttgaactctgcatatttctgattgcctcctcccctaaattt |
34463093 |
T |
|
| Q |
467 |
ttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaat |
532 |
Q |
| |
|
| || |||| |||||||||||||||||| ||||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
34463094 |
tcatggcacacaggacaaatctgatatatgaacagtgaagcagtcattcagatatcaaatttcaat |
34463159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 382 - 520
Target Start/End: Original strand, 34526708 - 34526846
Alignment:
| Q |
382 |
aatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcagga |
481 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| ||||| ||| |||||| |||||||||||||||||||||||||||| || || ||| ||||| |
|
|
| T |
34526708 |
aatcacaagataatttacagataccttctgtgagattgggaagcttgtgttctgaaccatcctgattgcatcctcccctaagctttcatcacacacagga |
34526807 |
T |
|
| Q |
482 |
caaatctgatataggaacagtgaagcagtcactcagata |
520 |
Q |
| |
|
||| |||||||||||||||||| |||||||| ||||||| |
|
|
| T |
34526808 |
caattctgatataggaacagtgtagcagtcattcagata |
34526846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 207 - 571
Target Start/End: Original strand, 34511903 - 34512256
Alignment:
| Q |
207 |
gaagcatctttcttgtcatgcaattcccaatgaacatgtgagactccgtttctccgagggttccaaatcccctatgtagaaagcatacatcgttatatca |
306 |
Q |
| |
|
||||||| || ||| ||||||||| ||||||||||| ||||| |||||| |||| | ||||||| | | |||||||||||| | ||||| |||||| | |
|
|
| T |
34511903 |
gaagcatgttccttttcatgcaatgcccaatgaacaatggagacaccgtttttccgcgtgttccaattgcgctatgtagaaagtacacatcattatatta |
34512002 |
T |
|
| Q |
307 |
gcataatgaattgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagatacc |
406 |
Q |
| |
|
|| |||||||| |||| ||||||||| |||||| ||| | ||| || ||| |||||||||||||| ||||||||||| ||||||| ||| ||||| |
|
|
| T |
34512003 |
acaaaatgaattaagttacataagaatccaatactcctacccggaagctgagctattttacaattaaa--acataaatcacgagataagcaacatatacc |
34512100 |
T |
|
| Q |
407 |
ttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaag |
506 |
Q |
| |
|
| |||| ||| |||| ||| | || ||||||||| |||||||| || || || || | ||||||| |||||||||||| ||| ||||| |
|
|
| T |
34512101 |
t---------tttgcaagcttgaactctacggcaccctgattgcctcctcccccaaattttcatggctcacaggacatatctgatatagggacattgaag |
34512191 |
T |
|
| Q |
507 |
cagtcactcagataccaattttcaattataactaagtacaatacctatgttaaatgcttagaaat |
571 |
Q |
| |
|
|||||| ||| ||| ||| ||||||||||| |||||||| |||||| ||||||||| |||||||| |
|
|
| T |
34512192 |
cagtcattcaaatatcaaatttcaattatatctaagtactatacctgtgttaaatgtttagaaat |
34512256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 217 - 574
Target Start/End: Original strand, 34473965 - 34474323
Alignment:
| Q |
217 |
tcttgtcatgcaattcccaatgaacatgtgagactccgtttctccgagggttccaaatcccctatgtagaaagcatacatcgttatatcagcataatgaa |
316 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| |||||| |||| | ||| ||||| | | |||||||||| |||||||| ||||| | || || ||| |
|
|
| T |
34473965 |
tcttgtcatgcaatgcccaatcaacatcggagacaccgtttttccgcgagtttcaaatgcgccatgtagaaagtatacatcgatatattaacacaacgaa |
34474064 |
T |
|
| Q |
317 |
ttgggttatataa----gaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgt |
412 |
Q |
| |
|
||| |||| |||| |||| |||| | ||| | |||| | ||| || ||||| ||||| || || |||||||||||||| ||||| |||| | |
|
|
| T |
34474065 |
ttgagttacataattaagaataaaattcacctaccctgaaagtgagctatgttacatttaaatcatatgaatcacaagataagcagtagatagctttcgc |
34474164 |
T |
|
| Q |
413 |
gagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtca |
512 |
Q |
| |
|
|| || ||||| |||| ||||||||||||||||| | |||||||| || || || |||| ||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
34474165 |
aaggttgggaagcttgaactctgcaccatcctgatttcctcctccccgaaattttcatggcacacaggataaatctgatataggagcagtgaagcagtca |
34474264 |
T |
|
| Q |
513 |
ctcagataccaattttcaattataactaagtacaatacctatgttaaatgcttagaaatgtc |
574 |
Q |
| |
|
||||||| ||| ||| | ||||||||| || |||||| ||||||||| ||||||||||| |
|
|
| T |
34474265 |
ttcagatatcaaatttaagttataactacgt---atacctgtgttaaatgtttagaaatgtc |
34474323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 254 - 571
Target Start/End: Original strand, 27626178 - 27626484
Alignment:
| Q |
254 |
gtttctccgagggttccaaatcccctatgtagaaagcatacatcgttatatcagcataatgaattgggttatataagaatcaaatacttctatgcagaaa |
353 |
Q |
| |
|
|||| |||| ||||||||| | | |||||||||||| | ||||| |||||| | | |||||||| |||| ||||||||| |||||| ||| | ||| |
|
|
| T |
27626178 |
gtttttccgcgggttccaattgcgctatgtagaaagtacacatcattatattaagaaaatgaattaagttacataagaatccaatactcctacccggaag |
27626277 |
T |
|
| Q |
354 |
ctaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatc |
453 |
Q |
| |
|
|| ||| |||||||||||||| ||||||||||||||||||| ||| |||||||||| ||| |||| ||| | || ||||||||| || |
|
|
| T |
27626278 |
ctgagctattttacaattaaa--acataaatcacaagataagcaacatataccttttgc---------aagcttgaactctacggcaccctgattgcctc |
27626366 |
T |
|
| Q |
454 |
ctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaataccta |
553 |
Q |
| |
|
|||||| | || || || | ||||||| |||||||||||| ||| || |||||||| ||| ||| ||| ||||||||||| |||||||| |||||| |
|
|
| T |
27626367 |
ctcccccatattttcatggctcacaggacatatctgatatagggacattgtagcagtcattcaaatatcaaatttcaattatatctaagtactatacctg |
27626466 |
T |
|
| Q |
554 |
tgttaaatgcttagaaat |
571 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
27626467 |
tgttaaatgtttagaaat |
27626484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 96 - 341
Target Start/End: Original strand, 34488996 - 34489239
Alignment:
| Q |
96 |
atggtatcttcttcatctgagagcatatcattcaagcttggaagatacacattgtccctagacgctggcgaaattgaatcaggcactggttcatgtttgt |
195 |
Q |
| |
|
||||||| |||||||||||| | | |||||| |||||||||||||| ||||| |||| | | || ||||||||||| | |||||||||||||| |
|
|
| T |
34488996 |
atggtattttcttcatctgaaacaaaatcattggagcttggaagatacgaattgttcctaaatggtga--aaattgaatcaaagattggttcatgtttgt |
34489093 |
T |
|
| Q |
196 |
tgggttcccaggaagcatctttcttgtcatgcaattcccaatgaacatgtgagactccgtttctccgagggttccaaatcccctatgtagaaagcataca |
295 |
Q |
| |
|
|| | |||| || || ||||||||| ||| ||| |||||| ||| | |||| |||||| |||| ||||||||||||| ||||||||||| || || |
|
|
| T |
34489094 |
tgtttccccaagatgcgtctttcttgagatgtaatgcccaatcaacgttcgagataccgtttttccgcgggttccaaatccgctatgtagaaattatgca |
34489193 |
T |
|
| Q |
296 |
tcgttatatcagcataatgaattgggttatataagaatcaaatact |
341 |
Q |
| |
|
|| |||||||| |||| ||||||| |||| || ||||||||||||| |
|
|
| T |
34489194 |
tcattatatcaacatattgaattgagttagatgagaatcaaatact |
34489239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 182 - 337
Target Start/End: Original strand, 27624432 - 27624586
Alignment:
| Q |
182 |
tggttcatgtttgttgggttcccaggaagcatctttcttgtcatgcaattcccaatgaacatgtgagactccgtttctccgagggttccaaatcccctat |
281 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||||||| |||| ||| |||||| ||||| |||||| | |||| || || | ||||| |||| |||| |
|
|
| T |
27624432 |
tggttcttgtttgttgttttcccaggaagcatatttcttg-catgtaatacccaatcaacatttgagacactgtttttctgaagattccatatccgctat |
27624530 |
T |
|
| Q |
282 |
gtagaaagcatacatcgttatatcagcataatgaattgggttatataagaatcaaa |
337 |
Q |
| |
|
|||| || |||||| ||| ||||| |||||||||||| |||| ||| |||||||| |
|
|
| T |
27624531 |
ttagagagtatacattgttttatcaacataatgaattgagttagatatgaatcaaa |
27624586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 34469305 - 34469414
Alignment:
| Q |
88 |
cattgctgatggtatcttcttcatctgagagcatatcattcaagcttggaagatacacattgtccctagacgctggcgaaattgaatcaggcactggttc |
187 |
Q |
| |
|
|||||||| |||||| |||||||||||| | | |||||| |||||| || |||||||| ||||||| | | ||| |||||||||||| | |||||| |
|
|
| T |
34469305 |
cattgctggtggtattttcttcatctgaaacaaaatcattggagcttgaaaaatacacatcgtccctaaatggtggaaaaattgaatcagagattggttc |
34469404 |
T |
|
| Q |
188 |
atgtttgttg |
197 |
Q |
| |
|
|||||||||| |
|
|
| T |
34469405 |
atgtttgttg |
34469414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 34375837 - 34375769
Alignment:
| Q |
321 |
gttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaa |
389 |
Q |
| |
|
|||| |||||||||||||| | | | ||||||||| ||| |||||||||| |||| ||||||||||||| |
|
|
| T |
34375837 |
gttagataagaatcaaatattccgacgcagaaactgagctattttacaatcaaagaacataaatcacaa |
34375769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 337
Target Start/End: Original strand, 27628562 - 27628617
Alignment:
| Q |
282 |
gtagaaagcatacatcgttatatcagcataatgaattgggttatataagaatcaaa |
337 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| |||| || |||||||| |
|
|
| T |
27628562 |
gtagaaagtatacatcgttatatcaacataatgaattgagttaggtatgaatcaaa |
27628617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 541
Target Start/End: Complemental strand, 34375724 - 34375681
Alignment:
| Q |
498 |
acagtgaagcagtcactcagataccaattttcaattataactaa |
541 |
Q |
| |
|
||||| ||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
34375724 |
acagtaaagcagtcattcagataccaaatttcaattataactaa |
34375681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 34486923 - 34487013
Alignment:
| Q |
130 |
agcttggaagatacacattgtccctagacgctggcgaaattgaatcaggcactggttcatgtttgttgggttcccaggaagcatctttcttg |
221 |
Q |
| |
|
|||||||| |||||||||||||||| | | |||| ||||||||||| | |||||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
34486923 |
agcttggatcatacacattgtccctaaatggtggcagaattgaatcagact-tggttcatgtttgttgtttccccaagaagcatctttcttg |
34487013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 341
Target Start/End: Original strand, 34469428 - 34469517
Alignment:
| Q |
252 |
ccgtttctccgagggttccaaatcccctatgtagaaagcatacatcgttatatcagcataatgaattgggttatataagaatcaaatact |
341 |
Q |
| |
|
|||||| |||| ||||||||||| | ||||| ||| || ||||||||||||| |||| ||||||| |||| | |||||||||||||| |
|
|
| T |
34469428 |
ccgtttttccgcaggttccaaatctgcaatgtataaattattcatcgttatatcatcatattgaattgagttagaaaagaatcaaatact |
34469517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 350 - 576
Target Start/End: Complemental strand, 15741341 - 15741118
Alignment:
| Q |
350 |
gaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattg |
449 |
Q |
| |
|
|||||||| | || |||||||| ||||||||||||||||||| | || ||| |||||||| | |||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
15741341 |
gaaactaacctatgttacaatttaagcacataaatcacaagacaggtaacaaatacctttggcgagattgggaagcttgaactctgcaccatcctgatta |
15741242 |
T |
|
| Q |
450 |
catcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaata |
549 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||||||||| |||||||||||||| | | || ||||||| ||| |||||||||||||||||||| ||| |
|
|
| T |
15741241 |
catcctcccctaaatttttatcacacacaggacaaatctg--ataggaacagtgaa-cggccagtcagatatcaaatttcaattataactaagtactata |
15741145 |
T |
|
| Q |
550 |
cctatgttaaatgcttagaaatgtctt |
576 |
Q |
| |
|
|| | |||||| ||||||||||||| |
|
|
| T |
15741144 |
ccagcgctaaatgtttagaaatgtctt |
15741118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 350 - 576
Target Start/End: Original strand, 1575035 - 1575258
Alignment:
| Q |
350 |
gaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattg |
449 |
Q |
| |
|
|||||||| | || |||||||| ||||||||||||||||||| | || ||| |||||||| | |||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
1575035 |
gaaactaacctatgttacaatttaagcacataaatcacaagacaggtaacaaatacctttggcgagattgggaagcttgaactctgcaccatcctgatta |
1575134 |
T |
|
| Q |
450 |
catcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaata |
549 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||||||||| |||||||||||||| | | || ||||||| ||| |||||||||||||||||||| ||| |
|
|
| T |
1575135 |
catcctcccctaaatttttatcacacacaggacaaatctg--ataggaacagtgaa-cggccagtcagatatcaaatttcaattataactaagtactata |
1575231 |
T |
|
| Q |
550 |
cctatgttaaatgcttagaaatgtctt |
576 |
Q |
| |
|
|| | |||||| ||||||||||||| |
|
|
| T |
1575232 |
ccagcgctaaatgtttagaaatgtctt |
1575258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 328 - 537
Target Start/End: Original strand, 10533622 - 10533829
Alignment:
| Q |
328 |
aagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagatt |
427 |
Q |
| |
|
|||||||| ||||| ||| | |||||||| | || |||||||| ||||||||||||||||||| |||| |||||||||||| | || || ||| || |
|
|
| T |
10533622 |
aagaatcagatactcctacactgaaactaacctatgttacaatttaagcacataaatcacaagacaagtaacagatacctttggcgatgttgggagtctt |
10533721 |
T |
|
| Q |
428 |
gagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattt |
527 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||| ||||| ||| ||||||||||||| ||||||||||| || ||| || ||||||| ||| || |
|
|
| T |
10533722 |
gaactctgcaccatcctgattacatcctcccctaagtttttatcacacacaggacaaatctg--ataggaacagtaaaacagccattcagatatcaaatt |
10533819 |
T |
|
| Q |
528 |
tcaattataa |
537 |
Q |
| |
|
|||||||||| |
|
|
| T |
10533820 |
tcaattataa |
10533829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 364 - 537
Target Start/End: Original strand, 10526843 - 10527014
Alignment:
| Q |
364 |
ttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaag |
463 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| |||||||||||| | || || ||| |||| ||||||||||||||||| ||||||||| ||| |
|
|
| T |
10526843 |
ttacaatttaagcacataaatcacaagacaagtaacagatacctttggcgatgttgggagtcttgaactctgcaccatcctgattacatcctcccttaaa |
10526942 |
T |
|
| Q |
464 |
cctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataa |
537 |
Q |
| |
|
||||| ||| ||||||||||||| ||||||||||| || ||| || ||||||| ||| |||||||||||| |
|
|
| T |
10526943 |
tttttatcacacacaggacaaatctg--ataggaacagtaaaacagccattcagatatcaaatttcaattataa |
10527014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 500 - 544
Target Start/End: Original strand, 10531311 - 10531355
Alignment:
| Q |
500 |
agtgaagcagtcactcagataccaattttcaattataactaagta |
544 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||||||||||||||| |
|
|
| T |
10531311 |
agtgaagcagtcattcagataccgaatttcaattataactaagta |
10531355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1215 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold1215
Description:
Target: scaffold1215; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 328 - 537
Target Start/End: Original strand, 807 - 1014
Alignment:
| Q |
328 |
aagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagatt |
427 |
Q |
| |
|
|||||||| ||||| ||| | |||||||| | || |||||||| ||||||||||||||||||| |||| |||||||||||| | || || ||| || |
|
|
| T |
807 |
aagaatcagatactcctacactgaaactaacctatgttacaatttaagcacataaatcacaagacaagtaacagatacctttggcgatgttgggagtctt |
906 |
T |
|
| Q |
428 |
gagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattt |
527 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| ||| ||||| ||| ||||||||||||| ||||||||||| || ||| || ||||||| ||| || |
|
|
| T |
907 |
gaactctgcaccatcctgattacatcctcccttaaatttttatcacacacaggacaaatctg--ataggaacagtaaaacagccattcagatatcaaatt |
1004 |
T |
|
| Q |
528 |
tcaattataa |
537 |
Q |
| |
|
|||||||||| |
|
|
| T |
1005 |
tcaattataa |
1014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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