View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15312_low_3 (Length: 543)
Name: NF15312_low_3
Description: NF15312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15312_low_3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 17 - 543
Target Start/End: Complemental strand, 47068369 - 47067843
Alignment:
| Q |
17 |
gttatatgaaaaccttctcagagccacctcttcattcaaccctaggttcccagtgtccattagccttttgtaccttaatacccgaatcttgtaaacgtaa |
116 |
Q |
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| T |
47068369 |
gttatatgaaaaccttctcagagtcacctcttcattcaaccctaggttcccagtgtccgttagccttttgtaccttaatacccgaatcttgtaaacgtaa |
47068270 |
T |
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| Q |
117 |
tggatggatattaaaatcgctgaacacaaaagcgcagtaaaaattgatgtaacaattataatatgcaccactgctttggtacttgtaattagaggtggct |
216 |
Q |
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| T |
47068269 |
tggatggatattaaaatcgctgaacacaaaagcgcagtaaaaattgatgtaacaatgataatatgcaccactgctttggtacttgtaattagaggtggct |
47068170 |
T |
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| Q |
217 |
gtggataaaaaagtgtatcattccccttccggttttcgatgctgccatttcccacctttatgtatgctgctgcaggcgagccgtaggcttcatgtgtcct |
316 |
Q |
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| T |
47068169 |
gtggataaaaaagtgtatcattccccttccagttttcgatgctgccatttcccacctttatgtatgctgctgcaggcgagtcgtcggcttcatgtgtcct |
47068070 |
T |
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| Q |
317 |
tgtgacatatctcaaaggcaacccttgtttcttgcatctttcttcctcatacagtgcagcccaacagttgcaatcaaccaaacaagcaaatgagcattct |
416 |
Q |
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| T |
47068069 |
tgtgacatatctcaaaggcaacccttgtttcttgcatctttcttcctcatacagtgcagcccaacagttgcaatcaaccaaacaagcaaatgagcattct |
47067970 |
T |
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| Q |
417 |
ttttccgataatatatcctcagtctcaaaataaggatggtctttccatacaatattgttcattgggaccatatcataaaaggccaaaccatctttctcag |
516 |
Q |
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| T |
47067969 |
ttttccgataatatatcctcagtctcaaaataaggatggtctttccatacaatattgttcattgggaccatatcataaaaggccaaaccatctttctcag |
47067870 |
T |
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| Q |
517 |
ctctacactctgctttcgaatagttcc |
543 |
Q |
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| T |
47067869 |
ctctacactctgctttcgaatagttcc |
47067843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 303 - 543
Target Start/End: Original strand, 47076244 - 47076484
Alignment:
| Q |
303 |
gcttcatgtgtccttgtgacatatctcaaaggcaacccttgtttcttgcatctttcttcctcatacagtgcagcccaacagttgcaatcaaccaaacaag |
402 |
Q |
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| T |
47076244 |
gcttcatgtgttcgtttgacatatctcaaaggaagtccttgtttcttgcatcttccttcttcataaattgcagcccaacaattgcaatcaatcaaacaag |
47076343 |
T |
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| Q |
403 |
caaatgagcattctttttccgataatatatcctcagtctcaaaataaggatggtctttccatacaatattgttcattgggaccatatcataaaaggccaa |
502 |
Q |
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| T |
47076344 |
caaataagcattcttcttctgatgacatatcatcatctttgaaataaggatggtcattccaaacaagattggtcattgggaccatgttataaaaggccac |
47076443 |
T |
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| Q |
503 |
accatctttctcagctctacactctgctttcgaatagttcc |
543 |
Q |
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| T |
47076444 |
accatatttgtcacctctacactctgatgttgaatagttcc |
47076484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 47076023 - 47076074
Alignment:
| Q |
76 |
ttagccttttgtaccttaatacccgaatcttgtaaacgtaatggatggatat |
127 |
Q |
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| T |
47076023 |
ttagccttttatactttaatacccgaattttgtacatgtaatggatggatat |
47076074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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