View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15312_low_5 (Length: 441)
Name: NF15312_low_5
Description: NF15312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15312_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Original strand, 33704852 - 33705267
Alignment:
| Q |
15 |
atgaagagaagatgaagtacttgccatctcgtgtatagaaattcacctgaagaaa-----ccatacataatgatctggattcaaaccaattaatatcatg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33704852 |
atgaagagaagatgaagtacttgccatctcgtgtatagaaattcacctgaagaaatctaaccatacataatgatctggattcaaaccaattaatatcatg |
33704951 |
T |
|
| Q |
110 |
ttctacacaaataatttaaatttgtttgtatctcgatttaatcattatttcaataagttccccatatatatgaagaaa-tatggggcttcttcacattct |
208 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33704952 |
ttctacacaaataatttaaatttgtttatatcttgatttaatcattatttcaataagttccccatatatatgaagaaactatggggcttcttcacattct |
33705051 |
T |
|
| Q |
209 |
ttcattgtattcttttgtataaataatacaatttttattacagttgttaatgact-aatttattccaagataaaataggaattataaacagatgtaaaat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
33705052 |
ttcattgtattcttttgtataaataatacaatttttattacagttgttaatgactgaatttgttccaagataaaataggaattctaaacagatgtaaaat |
33705151 |
T |
|
| Q |
308 |
tattatgctgattttgtgcaccatataaaagcaaacaataatacaaaatagaattgttgactaatatcttcctcaagaagcatcatcttgcttagaaaac |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
33705152 |
tattatgctgattttgtgcaccatataaaagcaaacaataatacaaaatagaattgttgactaatatctccctcaagaagcatcatcttg---agaaaac |
33705248 |
T |
|
| Q |
408 |
taaaattgttggaagggag |
426 |
Q |
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| T |
33705249 |
taaaattgttggaagggag |
33705267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 33687846 - 33688115
Alignment:
| Q |
15 |
atgaagagaagatgaagtacttgccatctcgtgtatagaaattcacctgaagaaa-----ccatacataatgatctggattcaaaccaattaatatcatg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33687846 |
atgaagagaagatgaagtacttgccatctcgtgtatagaaattcacctgaagaaatctaaccatacataatgatctggattcaaaccaattaatatcatg |
33687945 |
T |
|
| Q |
110 |
ttctacacaaataatttaaatttgtttgtatctcgatttaatcattatttcaataagttccccatatatatgaagaaa-tatggggcttcttcacattct |
208 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33687946 |
ttctacacaaataatttaaatttgtttatatcttgatttaatcattatttcaataagttccccatatatatgaagaaactatggggcttcttcacattct |
33688045 |
T |
|
| Q |
209 |
ttcattgtattcttttgtataaataatacaatttttattacagttgttaatgact-aatttattccaaga |
277 |
Q |
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| T |
33688046 |
ttcattgtattcttttgtataaataatacaatttttattacagttgttaatgactgaatttgttccaaga |
33688115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 350
Target Start/End: Complemental strand, 12873629 - 12873556
Alignment:
| Q |
277 |
ataaaataggaattataaacagatgtaaaattattatgctgattttgtgcaccatataaaagcaaacaataata |
350 |
Q |
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|||||||| ||||| |||| | || || |||||||| ||||||| | ||||||||||||||| ||||||||||| |
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| T |
12873629 |
ataaaatatgaattctaaatatatatacaattattaggctgattctatgcaccatataaaaggaaacaataata |
12873556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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