View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15312_low_6 (Length: 421)
Name: NF15312_low_6
Description: NF15312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15312_low_6 |
 | |
|
| [»] scaffold0059 (2 HSPs) |
| | |
|
| [»] scaffold0022 (2 HSPs) |
| | |
|
| [»] scaffold0142 (1 HSPs) |
| | |
|
| [»] scaffold0273 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 60 - 407
Target Start/End: Complemental strand, 20246813 - 20246466
Alignment:
| Q |
60 |
cttgatgattcgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctg |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246813 |
cttgatgattcgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctg |
20246714 |
T |
|
| Q |
160 |
taaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatgg |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246713 |
taaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatgg |
20246614 |
T |
|
| Q |
260 |
tcattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttg |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246613 |
tcattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttg |
20246514 |
T |
|
| Q |
360 |
ttaggaagagaatggattcatgggataggtattgttccctcatccatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246513 |
ttaggaagagaatggattcatgggataggtattgttccctcatccatg |
20246466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 60 - 407
Target Start/End: Complemental strand, 22140797 - 22140450
Alignment:
| Q |
60 |
cttgatgattcgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctg |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140797 |
cttgatgattcgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctg |
22140698 |
T |
|
| Q |
160 |
taaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatgg |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140697 |
taaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatgg |
22140598 |
T |
|
| Q |
260 |
tcattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttg |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140597 |
tcattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttg |
22140498 |
T |
|
| Q |
360 |
ttaggaagagaatggattcatgggataggtattgttccctcatccatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140497 |
ttaggaagagaatggattcatgggataggtattgttccctcatccatg |
22140450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 13778647 - 13778739
Alignment:
| Q |
80 |
tcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgatgcc |
172 |
Q |
| |
|
||||||||| ||||||| |||||||| ||| | || | |||| || ||||||||| | |||||||||||||||||||||||||| |||| |
|
|
| T |
13778647 |
tcatcttaagcctttgtttatccaagctaaaatcaataatgttgggattaacaaagtgctcatcgatggtggtgctgctgtaaatttgttgcc |
13778739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 16165307 - 16165251
Alignment:
| Q |
347 |
cttcaacttgttgttaggaagagaatggattcatgggataggtattgttccctcatc |
403 |
Q |
| |
|
|||||||||| | ||||||||||||||||| ||||| ||| || ||||||| ||||| |
|
|
| T |
16165307 |
cttcaacttgctcttaggaagagaatggatacatggaataagtgttgttccttcatc |
16165251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 62 - 407
Target Start/End: Original strand, 11885251 - 11885595
Alignment:
| Q |
62 |
tgatgattcgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgta |
161 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
11885251 |
tgatgattcgatgaagaatcatcttaaacctttgttcatccaagccaaagtagatgagattggcatcaacaaagtgttggtcgacggttgtgctactgtc |
11885350 |
T |
|
| Q |
162 |
aatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatggtc |
261 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| | ||| |
|
|
| T |
11885351 |
aatttgatgcctcagtccttactcaaaaggattgacaagaccgacaaagacttgaagcgtcataatgtaattctgtcaaattatgaaggaaaggctagtc |
11885450 |
T |
|
| Q |
262 |
attcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgtt |
361 |
Q |
| |
|
||| |||||||||||| |||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11885451 |
atttccttggtgctcttcaagtgagtctaacagtgggaattgtggtcaga-caaatttgttcatggtagtcccatcgaaagctaacttcaacttgttgtt |
11885549 |
T |
|
| Q |
362 |
aggaagagaatggattcatgggataggtattgttccctcatccatg |
407 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
11885550 |
aggaagagaatggattcatgtgataggtgttgttccctcatccatg |
11885595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 267 - 403
Target Start/End: Complemental strand, 14930174 - 14930038
Alignment:
| Q |
267 |
cttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaa |
366 |
Q |
| |
|
|||||||||||| |||||| ||| || |||||| |||| |||||||||||||||||||||||| ||||| ||||| |||||||| ||| | || | | |
|
|
| T |
14930174 |
cttggtgctctcaaagtgaatctcactgtgggatctgtcaccagaccaactttgttcatggtagttccatcaaaagccaacttcaatttgctcctatgga |
14930075 |
T |
|
| Q |
367 |
gagaatggattcatgggataggtattgttccctcatc |
403 |
Q |
| |
|
|||||||||| |||| ||| ||| ||||||| ||||| |
|
|
| T |
14930074 |
gagaatggatacatgtgattggtgttgttccttcatc |
14930038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 393
Target Start/End: Original strand, 18474242 - 18474316
Alignment:
| Q |
319 |
tgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaagagaatggattcatgggataggtattg |
393 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||| ||| | |||| ||||||||||| ||||| || ||||||| |
|
|
| T |
18474242 |
tgttcatggtagttccatagaaagctaatttcaaattgatcctagggagagaatggatacatggaattggtattg |
18474316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 18474043 - 18474103
Alignment:
| Q |
96 |
ttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctg |
156 |
Q |
| |
|
||||| ||||||||||| || |||||||| |||||||||| ||||| ||||| ||||||| |
|
|
| T |
18474043 |
ttcattcaagccaaagttgacgagattggagtcaacaaagtattggtagatggcggtgctg |
18474103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 62 - 407
Target Start/End: Complemental strand, 4599044 - 4598699
Alignment:
| Q |
62 |
tgatgattcgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgta |
161 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||| |||||||||||||| |
|
|
| T |
4599044 |
tgatgattcgatgaggaatcatctcaaacctttgttcatccaagccaaagtgaatgagatcggtgttaacaaagtgttggtcgacggtggtgctgctgtc |
4598945 |
T |
|
| Q |
162 |
aatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatggtc |
261 |
Q |
| |
|
||| ||||||||||||| |||||||||| |||||| ||||| ||||| |||||||||||||||| ||| ||| ||||||||||||||||||||| ||||| |
|
|
| T |
4598944 |
aatatgatgcctcaatctttactcaaaaggattggcaagactgacaatgatttgaagcctcatactgtgattctgtcaaattatgaaggaaaggctggtc |
4598845 |
T |
|
| Q |
262 |
attcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgtt |
361 |
Q |
| |
|
||| ||||||||||||||| |||| |||||||||||||| |||| ||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
4598844 |
attttcttggtgctctccaaatgagcctaacggtgggaaccatggttagaccaactttattcatggtggtcccttcgaaggctaacttcaacttgttgtt |
4598745 |
T |
|
| Q |
362 |
aggaagagaatggattcatgggataggtattgttccctcatccatg |
407 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4598744 |
agggagagaatggattcatgggataggcgttgttccctcatccatg |
4598699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 60 - 233
Target Start/End: Original strand, 18218269 - 18218442
Alignment:
| Q |
60 |
cttgatgattcgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctg |
159 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||||| |
|
|
| T |
18218269 |
cttgatgattcgatgaagaatcatctcaaaactttgttcatccaagccaaagtggatgagattggtgttaacaaagtgttggtcgacggtggcactgctg |
18218368 |
T |
|
| Q |
160 |
taaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaatt |
233 |
Q |
| |
|
| ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
18218369 |
tcaatctgatgcctcaatccttactcaaaaggattgacaagaccgacaaagatttgaaacctcataacgtaatt |
18218442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 20862933 - 20862859
Alignment:
| Q |
102 |
caagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgatgcctcaa |
176 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||| |||||||| |||||||||| |||||| ||| |||| |||||| |
|
|
| T |
20862933 |
caagccaaagttgatgatattggagtcaacaaggtgttggtagatggtggtgttgctgtcaatctgatacctcaa |
20862859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 62 - 397
Target Start/End: Original strand, 24988169 - 24988504
Alignment:
| Q |
62 |
tgatgattcgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgta |
161 |
Q |
| |
|
||||||||| ||||||| |||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24988169 |
tgatgattcaatgaagagtcatattaaacctttgttcattcaagccaaagtggatgatattggtatcaacaaagtgttgggcgatggtggtgctgctgtc |
24988268 |
T |
|
| Q |
162 |
aatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatggtc |
261 |
Q |
| |
|
||| |||||||||||||| |||| |||| |||||| ||||||||||||||||| |||||||||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
24988269 |
aatctgatgcctcaatccctacttaaaaggattggcaagaccgacaaagattttaagcctcataatgtaattcaatcaaattatgtaggaaaggctggtc |
24988368 |
T |
|
| Q |
262 |
attcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgtt |
361 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||| | |||| ||||||||| |||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
24988369 |
attcccttggtgctcttcaagtgagtctaatggtgggaactttagtcataccaacttttttcatggtggtcctatccaaagctaacttcaacttgttgtt |
24988468 |
T |
|
| Q |
362 |
aggaagagaatggattcatgggataggtattgttcc |
397 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
24988469 |
aggaagagagtggattcatgggataggcgttgttcc |
24988504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 63 - 407
Target Start/End: Original strand, 25567132 - 25567476
Alignment:
| Q |
63 |
gatgattcgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaa |
162 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||||||||||| |||||||||||||| || ||| ||||||||||||||||| ||||||| || ||| | |
|
|
| T |
25567132 |
gatgattcgatgaagagtcatctcaaacctttgttcatccaatccaaagtggatgaggttattattaacaaagtgttggtcgacggtggtgatgttgtta |
25567231 |
T |
|
| Q |
163 |
atttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatggtca |
262 |
Q |
| |
|
|| |||||||||||||||||||||||| | |||| |||||||||||| ||||||||||||||||| ||||| |||| | |||||||||||||| |||||| |
|
|
| T |
25567232 |
atctgatgcctcaatccttactcaaaaaggttggaaagaccgacaaaaatttgaagcctcataatctaattatgtcgagttatgaaggaaagggtggtca |
25567331 |
T |
|
| Q |
263 |
ttcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgtta |
362 |
Q |
| |
|
|| ||||||||| ||| ||| | |||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
25567332 |
tttccttggtgcactcagagtatgcttaacggagggaaccatggttagaccaactttgttcatggtggtcccatcgaaagctaacttcaacttattgttg |
25567431 |
T |
|
| Q |
363 |
ggaagagaatggattcatgggataggtattgttccctcatccatg |
407 |
Q |
| |
|
|| || |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
25567432 |
gggagggaatggattcatgggataggcgttgttcccacatccatg |
25567476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 262 - 407
Target Start/End: Complemental strand, 25582646 - 25582501
Alignment:
| Q |
262 |
attcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgtt |
361 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
25582646 |
attccattggtgctatccaagtgagtctaacggtgggaactatggtcagaccaactttgttcatggtagtcccatcgaaagataacttccacttgttgtt |
25582547 |
T |
|
| Q |
362 |
aggaagagaatggattcatgggataggtattgttccctcatccatg |
407 |
Q |
| |
|
||||||||||| ||||||||||| | || ||||||||||||||||| |
|
|
| T |
25582546 |
aggaagagaatagattcatgggacatgtgttgttccctcatccatg |
25582501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 62 - 361
Target Start/End: Complemental strand, 2284143 - 2283844
Alignment:
| Q |
62 |
tgatgattcgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgta |
161 |
Q |
| |
|
||||| || |||||||| ||| || || |||||||||||||| |||||||||||||||||| | ||||||||||||||||| |||||||| ||||| |
|
|
| T |
2284143 |
tgatgctttgatgaagagtcacctcaagcctttgttcatccaaaataaagtggatgagattggtgttaacaaagtgttggtcgacggtggtgccgctgtc |
2284044 |
T |
|
| Q |
162 |
aatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatggtc |
261 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| | || |
|
|
| T |
2284043 |
aatctgatgcctcaatccttactcaaaaggattggtaagaccgacaaagatttgaagccgcataatgtgattttgtcgaattatgaaggaaaggcttgta |
2283944 |
T |
|
| Q |
262 |
attcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgtt |
361 |
Q |
| |
|
|||| |||| |||||| ||||| || |||| ||||||||| |||| ||| |||||||||||||||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
2283943 |
attcacttgatgctcttcaagtaagcttaacagtgggaactctggttagaacaactttgttcatggtggtcccatcgaaaactaacttcaagttgttgtt |
2283844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 261 - 389
Target Start/End: Complemental strand, 16052796 - 16052668
Alignment:
| Q |
261 |
cattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgt |
360 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| ||| || | ||||||||||||| ||| || |||||||||||||||||||||||| | | |
|
|
| T |
16052796 |
cattcccttggtgctctccaagtgaatctaactgtggtaaccgttacgatgccaactttgttcaaggttgtaccatcgaaagctaacttcaacttgctct |
16052697 |
T |
|
| Q |
361 |
taggaagagaatggattcatgggataggt |
389 |
Q |
| |
|
| |||| ||||||||| ||||| |||||| |
|
|
| T |
16052696 |
tgggaaaagaatggatacatggaataggt |
16052668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 13277446 - 13277366
Alignment:
| Q |
308 |
cagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaagagaatggattcatgggatagg |
388 |
Q |
| |
|
|||||| || ||||||||||| || ||||| |||| |||||| |||||| | || ||||||||||| || ||||| ||||| |
|
|
| T |
13277446 |
cagaccgacattgttcatggtggtaccatcaaaagataactttaacttgctcttgggaagagaatgcatacatggaatagg |
13277366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 68 - 247
Target Start/End: Complemental strand, 34795 - 34616
Alignment:
| Q |
68 |
ttcgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttg |
167 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| |||| | |||||||||||||||||||||||||||||||| ||||||| || || |||||| |
|
|
| T |
34795 |
ttcgatgaagaatcatcttaaacgtttgtccatccaaggcaaactagatgagattggtatcaacaaagtgttggtcgacggtggtgttgtcgtcaatttg |
34696 |
T |
|
| Q |
168 |
atgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatga |
247 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| || |||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
34695 |
atgcatcaatccttactcaaaaggattggtaagaccggtaaggatttgaagcatcacaatgtaattctgtcaaattatga |
34616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 296 - 407
Target Start/End: Complemental strand, 34605 - 34494
Alignment:
| Q |
296 |
gggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaagagaatggattcatgggataggtattgtt |
395 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||| |
|
|
| T |
34605 |
gggaactatggtcagaccaactttgttcatggtagttgcatcgaaagctaacttcaacttgttgttaaaaagagaatggattcataagataggtgatgtt |
34506 |
T |
|
| Q |
396 |
ccctcatccatg |
407 |
Q |
| |
|
|||||||||||| |
|
|
| T |
34505 |
ccctcatccatg |
34494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 294 - 407
Target Start/End: Original strand, 111371 - 111484
Alignment:
| Q |
294 |
gtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaagagaatggattcatgggataggtattg |
393 |
Q |
| |
|
|||| ||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||| ||||| || ||| |||||||||||||||||||| || |
|
|
| T |
111371 |
gtggaaactgtggttagaccaactttattcatggtggtcccatcaaaagctaacttcaacttattgttggggagacaatggattcatgggataggtgatg |
111470 |
T |
|
| Q |
394 |
ttccctcatccatg |
407 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
111471 |
ttccctcatccatg |
111484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 107189 - 107226
Alignment:
| Q |
261 |
cattcccttggtgctctccaagtgagtctaacggtggg |
298 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
107189 |
cattcccttggtgctctccaagtaagtctaatggtggg |
107226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0142
Description:
Target: scaffold0142; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 403
Target Start/End: Complemental strand, 15627 - 15320
Alignment:
| Q |
96 |
ttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgatgcctcaatccttactcaaaatgattg |
195 |
Q |
| |
|
||||| |||| |||||| ||||| ||| | |||||||| ||||||| |||||||||| |||||| ||||||||||||||||| ||||| || | || || |
|
|
| T |
15627 |
ttcattcaagtcaaagttgatgatattagagtcaacaaattgttggtagatggtggtgttgctgtcaatttgatgcctcaatctttacttaagaagaatg |
15528 |
T |
|
| Q |
196 |
gtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatggtcattcccttggtgctctccaagtgagtctaacggt |
295 |
Q |
| |
|
| || | | | |||||| | |||||| || || |||| || |||||||| || | ||| ||| |||| ||||||| |||||| ||| | || |
|
|
| T |
15527 |
ggaaatatggtacatatttgagacatcataaattagttatgtcgaactatgaagggaaagctgggttttctcttgatgctctctaagtgaatctcattgt |
15428 |
T |
|
| Q |
296 |
gggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaagagaatggattcatgggataggtattgtt |
395 |
Q |
| |
|
|||| |||| |||||| |||||||||||||| || ||||| |||||||||||||||||| | || | ||| | ||||| ||||| |||||| ||||| |
|
|
| T |
15427 |
gggatctgttaccagaccgactttgttcatggtggtaccatcaaaagctaacttcaacttgctttttagtagaaattggatacatggaataggttttgtt |
15328 |
T |
|
| Q |
396 |
ccctcatc |
403 |
Q |
| |
|
|| ||||| |
|
|
| T |
15327 |
ccttcatc |
15320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0273 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0273
Description:
Target: scaffold0273; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 403
Target Start/End: Complemental strand, 21291 - 21200
Alignment:
| Q |
312 |
ccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaagagaatggattcatgggataggtattgttccctcatc |
403 |
Q |
| |
|
|||||||||||||||||||| || | |||| |||||||| ||| | |||||||||||||||||||| | || ||| ||||||| ||||| |
|
|
| T |
21291 |
ccaactttgttcatggtagtgccgttaaaagaaaacttcaatttgcttataggaagagaatggattcatagaattggtgttgttccttcatc |
21200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 382
Target Start/End: Original strand, 20063350 - 20063465
Alignment:
| Q |
267 |
cttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaa |
366 |
Q |
| |
|
|||||||||||||||||||| || || || ||| ||| ||||||||||||||||| || || ||||| ||||| ||||| |||||| | ||||||| |
|
|
| T |
20063350 |
cttggtgctctccaagtgagcctcactgtaggatttgttactagaccaactttgttcatagtggtgccatcaaaagcaaactttaacttgcttttaggaa |
20063449 |
T |
|
| Q |
367 |
gagaatggattcatgg |
382 |
Q |
| |
|
| ||||| || ||||| |
|
|
| T |
20063450 |
gggaatgcatacatgg |
20063465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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